Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 3.6e-263 911.4 578 100.0
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.8e-212 741.9 573 82.9
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 1.9e-211 739.6 568 84.7
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 2.4e-211 739.2 578 84.6
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 2.1e-210 736.1 576 84.0
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 3.0e-209 732.3 568 84.9
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 1.1e-208 730.3 573 84.8
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.5e-208 729.9 583 83.4
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 5.6e-208 728.0 556 83.8
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.1e-207 726.1 572 83.6
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 5.3e-206 721.5 568 83.3
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 9.0e-206 720.7 572 82.2
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 9.9e-205 717.2 568 83.1
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 2.7e-202 709.1 569 81.2
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 3.5e-202 708.8 607 73.8
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 5.1e-201 704.9 568 81.2
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 1.1e-200 703.7 574 80.5
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.1e-200 703.7 573 81.3
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.5e-200 703.4 573 80.8
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 1.5e-200 703.4 573 80.8
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.5e-200 703.4 573 80.8
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 1.5e-200 703.4 578 81.8
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 3.3e-200 702.2 573 80.8
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 3.3e-200 702.2 573 80.8
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 4.3e-200 701.8 558 82.8
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 1.3e-199 700.3 576 81.1
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 3.6e-199 698.7 573 80.5
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.8e-198 696.4 573 82.2
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.8e-198 696.4 556 81.8
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 2.4e-198 696.0 573 82.2
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 4.0e-198 695.3 565 82.7
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 9.0e-198 694.1 555 82.2
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.0e-197 693.0 566 78.8
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.6e-197 692.6 557 81.5
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 3.4e-197 692.2 581 78.3
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.3e-196 690.3 575 79.3
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 4.9e-196 688.3 579 80.0
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.9e-195 686.4 557 80.8
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 4.2e-195 685.3 541 78.9
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 5.5e-195 684.9 573 78.9
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.7e-194 682.6 549 78.0
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 4.6e-194 681.8 558 81.9
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 7.9e-194 681.0 556 80.6
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 7.9e-194 681.0 558 81.7
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.0e-193 680.6 578 78.4
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.0e-193 680.6 569 80.5
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 2.5e-192 676.0 571 77.8
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 5.6e-192 674.9 574 78.4
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.1e-190 670.6 579 79.1
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.8e-190 669.8 563 80.1
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 3.1e-190 669.1 579 79.1
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 2.6e-189 666.0 575 68.0
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 4.5e-189 665.2 557 78.5
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 4.5e-189 665.2 579 78.9
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 7.6e-189 664.5 568 78.7
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.3e-188 663.7 575 77.2
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 3.8e-188 662.1 571 78.5
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.5e-187 659.4 571 67.3
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 3.2e-187 659.1 575 76.5
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.1e-186 656.4 566 78.8
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 2.7e-186 656.0 571 72.7
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 7.9e-186 654.4 557 77.6
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 7.9e-186 654.4 570 77.2
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 7.9e-186 654.4 566 79.0
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.3e-185 653.7 561 79.1
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.3e-185 652.9 559 73.5
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.9e-185 652.1 573 77.8
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 5.1e-185 651.7 571 71.6
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 6.7e-185 651.4 570 76.5
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 8.7e-185 651.0 575 75.1
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 8.7e-185 651.0 570 76.5
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 2.5e-184 649.4 570 72.3
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.3e-184 648.7 570 76.1
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.3e-184 648.7 570 68.9
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 7.4e-184 647.9 574 76.1
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 1.6e-183 646.7 574 72.0
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 6.3e-183 644.8 563 76.6
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 6.3e-183 644.8 573 79.4
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.1e-182 644.0 563 71.0
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.8e-182 643.3 558 74.4
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 1.2e-181 640.6 560 77.9
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 3.4e-181 639.0 575 74.8
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 3.8e-180 635.6 577 76.4
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 5.0e-180 635.2 575 77.2
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 6.5e-180 634.8 566 75.6
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 8.5e-180 634.4 569 77.0
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 3.2e-179 632.5 523 81.1
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 3.2e-179 632.5 546 78.2
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 7.2e-179 631.3 555 76.9
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.2e-178 630.6 572 77.1
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 4.6e-178 628.6 557 75.8
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 4.6e-178 628.6 549 78.7
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 6.1e-178 628.2 571 76.9
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.3e-177 627.1 556 73.0
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 1.1e-176 624.0 561 72.7
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 7.4e-176 621.3 586 74.1
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 1.6e-175 620.2 573 76.1
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 3.1e-174 615.9 568 74.3
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 9.1e-174 614.4 618 61.7
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.5e-173 613.6 568 75.2
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.7e-172 610.1 566 62.2
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 3.3e-168 595.9 557 74.0
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 4.1e-166 589.0 596 70.3
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 5.9e-165 585.1 533 76.7
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 2.7e-162 576.2 482 81.3
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 9.7e-160 567.8 558 65.1
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 9.7e-160 567.8 568 71.0
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 5.3e-158 562.0 505 72.9
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 2.0e-157 560.1 504 76.2
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 8.0e-154 548.1 572 64.2
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 6.7e-153 545.0 557 65.7
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.3e-151 540.8 557 66.4
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.0e-149 533.5 559 72.6
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.5e-144 517.3 557 61.0
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 5.7e-144 515.4 555 62.0
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-139 501.1 507 71.6
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 3.4e-136 489.6 628 63.7
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.1e-134 483.0 551 60.6
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 2.7e-133 479.9 423 82.0
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.9e-123 447.2 506 62.6
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.2e-122 444.5 258 82.6
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.2e-120 438.0 427 77.3
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.3e-119 434.5 423 77.3
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 4.1e-118 429.5 262 80.9
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 3.1e-113 413.3 422 67.3
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 3.4e-96 356.7 422 48.6
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.7e-95 354.4 476 56.3
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 3.6e-90 336.7 450 65.3
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 4.2e-86 323.2 198 82.3
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 1.5e-83 314.7 242 65.3
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.9e-83 314.3 214 71.5
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 4.8e-82 309.7 198 79.8
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.0e-76 292.0 304 82.9
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 2.0e-72 277.7 182 78.6
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 4.6e-69 266.5 171 78.4
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.1e-65 255.4 198 65.2
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 9.0e-65 252.3 216 67.6
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.5e-64 251.5 319 68.7
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 5.7e-59 233.0 138 83.3
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 3.0e-52 210.7 228 53.5
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 5.9e-48 196.4 289 77.5
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-47 195.3 111 86.5
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 2.1e-45 188.0 111 83.8
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 3.6e-45 187.2 131 67.2
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 2.2e-42 177.9 197 51.3
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 4.5e-40 170.2 167 56.9
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 8.5e-39 166.0 87 85.1
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 5.5e-38 163.3 199 48.7
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 1.6e-37 161.8 572 35.3
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-32 144.1 323 52.6
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.2e-31 141.4 121 59.5
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 5.0e-31 140.2 158 50.6
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 5.5e-30 136.7 176 47.2
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.2e-30 136.3 95 72.6
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.1e-29 133.3 92 71.7
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.0e-28 131.0 95 71.6
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.8e-28 129.8 104 63.5
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 1.2e-27 129.0 543 32.2
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 1.6e-24 118.6 212 35.4
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-21 108.6 69 75.4
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 5.7e-19 100.1 80 66.2
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 4.5e-16 90.5 62 69.4
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 1.0e-15 89.4 68 64.7
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.8e-15 87.4 65 67.7
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 5.6e-14 83.6 63 65.1
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 1.2e-13 82.4 56 69.6
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 6.1e-13 80.1 66 63.6
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.6e-11 74.7 51 68.6
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 2.2e-10 71.6 48 64.6
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 2.4e-09 68.2 77 48.1
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 4.1e-09 67.4 44 70.5
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 7.0e-09 66.6 56 60.7
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 7.0e-09 66.6 48 66.7
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 7.0e-09 66.6 73 50.7
A02p18780 Brassica napus HOM05D003766 ORTHO05D004607 9.2e-09 66.2 83 48.2
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.2e-08 65.9 59 55.9
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 5.0e-07 60.5 43 65.1
Oeu049536.1 Olea europaea HOM05D003766 ORTHO05D004607 1.9e-06 58.5 59 52.5
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 5.6e-06 57.0 68 50.0


User provided reference genes

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