Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 4.9e-109 397.9 212 100.0
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.9e-76 289.7 205 72.7
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 9.3e-76 287.3 218 69.7
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 1.5e-73 280.0 216 66.7
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.5e-73 279.3 222 67.1
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 5.6e-73 278.1 223 69.1
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 9.6e-73 277.3 215 67.0
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 8.1e-72 274.2 216 65.7
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 3.1e-71 272.3 224 64.7
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 5.8e-70 268.1 210 67.6
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 7.6e-70 267.7 233 61.8
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.2e-69 266.2 224 62.9
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 6.5e-69 264.6 225 62.7
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 8.4e-69 264.2 206 68.4
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.1e-68 263.8 225 62.2
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 9.3e-68 260.8 205 66.3
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.1e-67 259.6 206 67.0
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 3.5e-67 258.8 204 65.7
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.0e-66 255.8 206 66.0
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.0e-66 255.8 206 66.0
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 8.2e-64 247.7 223 61.4
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 9.0e-63 244.2 205 62.4
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 2.0e-62 243.0 197 64.5
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 2.2e-61 239.6 243 52.7
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 2.9e-61 239.2 205 59.5
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.5e-61 238.0 205 61.0
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 8.4e-61 237.7 205 59.0
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 1.6e-59 233.4 256 54.3
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 2.1e-59 233.0 205 60.0
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 3.5e-59 232.3 206 60.2
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 7.9e-59 231.1 205 65.9
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.3e-58 230.3 205 57.1
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 5.1e-58 228.4 209 58.4
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 6.7e-58 228.0 205 60.0
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.5e-57 226.9 208 58.7
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.5e-57 226.9 209 58.9
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 1.5e-57 226.9 210 57.1
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.5e-57 226.9 206 58.7
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 2.5e-57 226.1 205 59.0
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 3.3e-57 225.7 206 59.7
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 4.3e-57 225.3 172 69.2
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 5.7e-57 224.9 203 58.6
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 7.4e-57 224.6 208 59.1
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 9.7e-57 224.2 207 58.5
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 9.7e-57 224.2 207 58.0
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.3e-56 223.8 211 56.4
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.6e-56 223.4 205 58.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.6e-56 223.4 209 57.9
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.6e-56 223.4 209 57.9
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.2e-56 223.0 204 57.4
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.2e-56 223.0 208 58.7
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 2.2e-56 223.0 208 57.7
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.2e-56 223.0 205 58.5
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 2.2e-56 223.0 205 56.6
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 2.2e-56 223.0 209 56.5
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 2.2e-56 223.0 205 58.0
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 2.8e-56 222.6 206 58.3
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.7e-56 222.2 208 57.7
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 6.3e-56 221.5 208 57.7
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 6.3e-56 221.5 209 57.9
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 8.2e-56 221.1 208 58.2
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 8.2e-56 221.1 203 58.1
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 2.4e-55 219.5 211 55.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 3.1e-55 219.2 216 56.9
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 3.1e-55 219.2 203 57.6
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 3.4e-54 215.7 211 55.0
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.4e-54 215.7 208 56.7
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 7.7e-54 214.5 166 73.5
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.7e-54 214.5 209 56.0
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.0e-53 214.2 209 56.0
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.0e-53 214.2 208 56.2
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.3e-53 213.8 205 56.1
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 2.9e-53 212.6 208 54.8
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.9e-53 212.6 205 54.6
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 3.8e-53 212.2 211 54.5
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 5.0e-53 211.8 207 57.0
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 5.0e-53 211.8 214 54.7
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 5.0e-53 211.8 135 80.7
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 6.5e-53 211.5 208 56.2
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 8.5e-53 211.1 208 55.3
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-52 210.7 208 55.3
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.9e-52 209.9 209 56.0
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 1.9e-52 209.9 206 54.9
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 9.4e-52 207.6 215 52.6
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.2e-51 207.2 207 53.6
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.6e-51 206.8 207 53.1
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.6e-51 206.8 204 52.9
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 2.1e-51 206.5 209 52.2
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 2.7e-51 206.1 204 52.9
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 2.7e-51 206.1 205 51.2
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 3.6e-51 205.7 209 55.0
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 6.1e-51 204.9 207 52.2
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.1e-51 204.9 203 52.2
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.8e-50 203.4 205 55.1
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.3e-50 203.0 209 51.2
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 3.0e-50 202.6 204 52.5
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 3.0e-50 202.6 204 52.5
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 3.0e-50 202.6 207 52.2
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 3.0e-50 202.6 207 52.2
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 3.0e-50 202.6 207 52.2
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 3.9e-50 202.2 210 51.9
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.1e-49 200.7 207 50.7
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 3.3e-49 199.1 168 64.9
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 4.3e-49 198.7 204 52.5
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 5.7e-49 198.4 203 52.7
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 7.4e-49 198.0 203 54.7
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 1.3e-48 197.2 210 52.9
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 1.7e-48 196.8 206 52.9
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 2.2e-48 196.4 185 56.8
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 4.8e-48 195.3 207 49.3
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 8.2e-48 194.5 207 49.8
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.1e-47 194.1 273 43.6
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 5.9e-46 188.3 190 55.3
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 7.7e-46 188.0 204 48.5
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 5.0e-45 185.3 180 53.9
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 2.5e-44 183.0 207 47.3
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.5e-44 183.0 209 47.8
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 8.8e-42 174.5 131 67.9
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.5e-41 173.7 209 46.4
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.6e-41 172.9 205 44.4
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 2.6e-41 172.9 205 44.4
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 4.4e-41 172.2 205 46.3
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 5.7e-41 171.8 210 43.8
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.8e-40 169.5 143 62.2
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 3.1e-39 166.0 163 55.2
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.1e-36 157.5 206 46.6
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 1.5e-36 157.1 206 46.1
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.5e-36 157.1 109 68.8
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 2.1e-35 153.3 139 54.7
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 6.1e-35 151.8 168 48.8
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.5e-33 147.1 212 38.7
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 3.3e-33 146.0 205 38.5
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 9.7e-33 144.4 149 53.7
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 4.8e-32 142.1 158 50.6
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 6.3e-32 141.7 110 62.7
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.0e-31 138.3 108 63.9
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 1.7e-29 133.7 180 46.7
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 9.4e-28 127.9 113 54.0
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.4e-26 124.0 111 53.2
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 9.8e-25 117.9 133 48.1
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.3e-24 117.5 205 39.0
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 3.1e-23 112.8 212 29.7
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 9.1e-23 111.3 205 37.1
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 1.6e-19 100.5 128 48.4
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 1.0e-18 97.8 75 64.0
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 8.8e-18 94.7 128 45.3
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.9e-16 89.0 101 51.5
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.8e-15 87.0 205 34.1
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 2.4e-15 86.7 215 27.9
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.1e-15 86.3 50 84.0
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 1.6e-14 84.0 208 27.9
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 2.0e-14 83.6 69 63.8
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 4.5e-14 82.4 127 40.9
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 6.6e-13 78.6 52 71.2
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.5e-12 76.6 49 71.4
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 9.8e-09 64.7 49 63.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 1.8e-07 60.5 112 33.0


User provided reference genes

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