Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 1.2e-83 313.2 166 100.0
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 2.8e-59 232.3 155 77.4
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.8e-58 229.6 155 76.8
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 4.4e-57 224.9 156 78.8
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 4.4e-57 224.9 156 78.8
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 1.2e-54 216.9 155 75.5
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 1.3e-53 213.4 155 72.9
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 3.0e-53 212.2 159 71.7
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 8.7e-53 210.7 155 72.9
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 4.8e-51 204.9 157 72.6
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 3.1e-50 202.2 160 70.6
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 6.9e-50 201.1 160 70.6
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 2.6e-49 199.1 160 68.8
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 2.6e-49 199.1 152 67.8
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 4.4e-49 198.4 151 72.2
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 9.9e-49 197.2 158 69.6
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 2.9e-48 195.7 150 69.3
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 8.4e-48 194.1 157 67.5
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 2.4e-47 192.6 145 73.1
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 3.2e-47 192.2 145 73.8
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 1.6e-46 189.9 160 68.1
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 6.0e-46 188.0 146 69.2
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 6.6e-45 184.5 164 62.8
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 1.1e-44 183.7 155 65.8
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 1.9e-44 183.0 143 69.9
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 3.3e-44 182.2 162 63.6
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 3.3e-44 182.2 146 69.2
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 4.3e-44 181.8 145 69.0
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 4.3e-44 181.8 143 70.6
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 4.3e-44 181.8 143 70.6
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 5.6e-44 181.4 155 65.8
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 7.3e-44 181.0 162 63.6
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 9.6e-44 180.6 162 64.2
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 9.6e-44 180.6 162 66.7
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 1.3e-43 180.3 156 65.4
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 2.1e-43 179.5 164 66.5
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 3.6e-43 178.7 153 66.0
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 3.6e-43 178.7 158 65.8
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 4.8e-43 178.3 156 64.1
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.4e-42 176.8 163 63.8
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 1.8e-42 176.4 140 70.0
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 4.0e-42 175.3 158 67.1
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 6.9e-42 174.5 144 68.1
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 9.0e-42 174.1 143 69.2
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 9.0e-42 174.1 157 63.7
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 1.2e-41 173.7 143 68.5
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 1.2e-41 173.7 144 68.1
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 1.5e-41 173.3 155 63.9
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 2.0e-41 172.9 121 76.9
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 4.5e-41 171.8 149 65.8
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 4.5e-41 171.8 155 63.9
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 5.8e-41 171.4 145 65.5
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 7.6e-41 171.0 163 65.6
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 9.9e-41 170.6 152 65.1
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 2.2e-40 169.5 138 67.4
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 2.9e-40 169.1 145 66.2
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 3.8e-40 168.7 145 65.5
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 1.1e-39 167.2 143 65.7
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 1.4e-39 166.8 153 64.7
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 5.4e-39 164.9 145 64.8
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 7.1e-39 164.5 142 65.5
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 7.1e-39 164.5 144 65.3
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 7.1e-39 164.5 159 62.9
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 1.6e-38 163.3 144 64.6
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 2.1e-38 162.9 143 63.6
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 2.1e-38 162.9 111 75.7
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 2.1e-38 162.9 152 61.8
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 2.7e-38 162.5 147 61.9
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 2.7e-38 162.5 142 65.5
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 2.7e-38 162.5 142 65.5
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 2.7e-38 162.5 165 61.2
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 6.0e-38 161.4 150 62.0
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 6.0e-38 161.4 144 63.9
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 6.0e-38 161.4 150 62.0
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 6.0e-38 161.4 151 62.9
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 7.9e-38 161.0 138 70.3
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 1.0e-37 160.6 149 59.1
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 1.3e-37 160.2 147 63.3
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 1.3e-37 160.2 152 63.8
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 1.3e-37 160.2 167 61.1
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 1.3e-37 160.2 156 60.9
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 1.8e-37 159.8 136 66.9
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 1.8e-37 159.8 149 59.1
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 2.3e-37 159.5 144 63.2
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 6.7e-37 157.9 150 60.7
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 6.7e-37 157.9 101 74.3
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 8.7e-37 157.5 144 62.5
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 8.7e-37 157.5 138 64.5
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 1.9e-36 156.4 99 81.8
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 3.3e-36 155.6 169 59.8
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 3.3e-36 155.6 154 60.4
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 5.6e-36 154.8 98 76.5
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 5.6e-36 154.8 151 58.9
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 5.6e-36 154.8 154 61.0
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 8.1e-35 151.0 98 78.6
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 1.1e-34 150.6 152 61.2
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 1.8e-34 149.8 156 57.7
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 3.1e-34 149.1 143 59.4
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 5.3e-34 148.3 96 81.2
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 5.8e-33 144.8 99 76.8
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 5.8e-33 144.8 129 63.6
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 1.0e-32 144.1 98 76.5
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 6.5e-32 141.4 101 72.3
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 8.4e-32 141.0 155 58.1
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.9e-31 139.8 98 72.4
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 1.9e-31 139.8 158 55.1
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 3.2e-31 139.0 103 68.9
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 7.1e-31 137.9 101 70.3
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 8.7e-29 131.0 98 69.4
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 5.7e-28 128.3 104 65.4
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 2.8e-27 125.9 88 78.4
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 4.5e-25 118.6 98 66.3
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 5.8e-25 118.2 133 55.6
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 6.5e-24 114.8 129 51.9
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 1.1e-23 114.0 127 54.3
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 1.4e-23 113.6 151 47.0
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 4.2e-23 112.1 151 46.4
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 6.1e-22 108.2 121 51.2
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 3.0e-21 105.9 127 49.6
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 5.1e-21 105.1 130 47.7
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.9e-20 103.2 98 59.2
Peaxi162Scf00015g00005 Petunia axillaris HOM05D006064 ORTHO05D007619 2.4e-18 96.3 60 80.0
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 2.5e-15 86.3 116 45.7
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 2.5e-15 86.3 73 58.9
Actinidia13476 Actinidia chinensis HOM05D006064 ORTHO05D007619 5.5e-15 85.1 66 63.6
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 1.2e-14 84.0 111 45.9
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 3.9e-13 79.0 74 59.5
Actinidia35657 Actinidia chinensis HOM05D006064 ORTHO05D007619 2.2e-11 73.2 98 43.9
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 3.1e-10 69.3 67 58.2
Cre02.g118950 Chlamydomonas reinhardtii HOM05D004588 ORTHO05D005365 4.5e-09 65.5 78 43.6
MCO03G166 Micromonas commoda HOM05D006064 ORTHO05D007619 3.8e-08 62.4 79 43.0
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 6.5e-08 61.6 77 37.7
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 1.4e-07 60.5 87 41.4
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 1.4e-07 60.5 98 39.8
TWI74G0566 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 1.9e-07 60.1 107 36.4
Actinidia38537 Actinidia chinensis HOM05D004588 ORTHO05D005365 2.5e-07 59.7 105 37.1
COL.COLO4_31171 Corchorus olitorius HOM05D004588 ORTHO05D005365 3.2e-07 59.3 101 37.6
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 3.2e-07 59.3 77 40.3
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 4.2e-07 58.9 77 40.3
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.2e-07 58.9 78 39.7
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.2e-07 58.9 78 39.7
FAN09G1784 Fragaria x ananassa HOM05D004588 ORTHO05D005365 4.2e-07 58.9 78 39.7
FvH4_5g34540 Fragaria vesca HOM05D004588 ORTHO05D005365 7.2e-07 58.2 78 39.7
FAN08G2577 Fragaria x ananassa HOM05D004588 ORTHO05D005365 7.2e-07 58.2 78 39.7
FAN18G1354 Fragaria x ananassa HOM05D004588 ORTHO05D005365 7.2e-07 58.2 78 39.7
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 7.2e-07 58.2 101 36.6
Ciclev10009986m.g Citrus clementina HOM05D004588 ORTHO05D005365 9.4e-07 57.8 87 40.2
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 9.4e-07 57.8 87 41.4
Rhsim01G0103600 Rhododendron simsii HOM05D004588 ORTHO05D005365 9.4e-07 57.8 98 33.7
RhsimUnG0238800 Rhododendron simsii HOM05D004588 ORTHO05D005365 9.4e-07 57.8 98 33.7
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 9.4e-07 57.8 87 41.4
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 1.2e-06 57.4 87 41.4
HanXRQChr06g0184041 Helianthus annuus HOM05D004588 ORTHO05D005365 1.6e-06 57.0 75 40.0
Lsat_1_v5_gn_4_185681 Lactuca sativa HOM05D004588 ORTHO05D005365 2.1e-06 56.6 75 40.0
Potri.018G150100 Populus trichocarpa HOM05D004588 ORTHO05D005365 2.1e-06 56.6 91 39.6
Duzib248G0295 Durio zibethinus HOM05D004588 ORTHO05D005365 2.7e-06 56.2 101 34.7
Gorai.009G295100 Gossypium raimondii HOM05D004588 ORTHO05D005365 3.6e-06 55.8 101 34.7
Oeu008630.1 Olea europaea HOM05D004588 ORTHO05D005365 3.6e-06 55.8 75 41.3
PRCOL_00003156 Prasinoderma coloniale HOM05D004588 ORTHO05D005365 3.6e-06 55.8 80 41.2
Atru.chr8.89 Acer truncatum HOM05D004588 ORTHO05D005365 4.7e-06 55.5 87 40.2
CiPaw.01G111800 Carya illinoinensis HOM05D004588 ORTHO05D005365 4.7e-06 55.5 75 40.0
MD11G1162200 Malus domestica HOM05D004588 ORTHO05D005365 4.7e-06 55.5 75 38.7
ECA238G1741 Erigeron canadensis HOM05D004588 ORTHO05D005365 6.1e-06 55.1 87 41.4
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 6.1e-06 55.1 75 38.7
SMO230G0073 Selaginella moellendorffii HOM05D004588 ORTHO05D005365 6.1e-06 55.1 77 37.7
Manes.01G180900 Manihot esculenta HOM05D004588 ORTHO05D005365 7.9e-06 54.7 109 33.9


User provided reference genes

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