Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 1.8e-153 546.2 338 100.0
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 3.2e-70 269.6 330 55.2
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 8.7e-68 261.5 171 78.9
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 3.3e-67 259.6 260 64.2
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 3.3e-67 259.6 256 68.8
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 5.6e-67 258.8 171 77.2
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 9.6e-67 258.1 171 76.0
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 4.8e-66 255.8 171 76.0
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 6.2e-66 255.4 325 53.8
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 6.2e-66 255.4 246 71.1
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.4e-65 254.2 171 75.4
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 1.4e-65 254.2 174 76.4
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 1.8e-65 253.8 341 51.3
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 1.8e-65 253.8 255 62.4
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 4.0e-65 252.7 169 76.3
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 6.9e-65 251.9 171 76.0
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 1.5e-64 250.8 328 54.6
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 1.5e-64 250.8 321 52.6
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 3.4e-64 249.6 171 74.9
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 3.4e-64 249.6 333 55.3
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 4.5e-64 249.2 170 78.2
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.5e-64 249.2 171 73.7
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 1.7e-63 247.3 171 73.7
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.9e-63 246.5 169 75.1
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 4.9e-63 245.7 170 74.7
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 6.5e-63 245.4 169 71.0
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 6.5e-63 245.4 168 75.0
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 1.9e-62 243.8 170 74.1
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.9e-62 243.8 171 70.8
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 5.5e-62 242.3 168 73.8
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.2e-61 241.1 171 70.2
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 1.6e-61 240.7 169 69.8
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 1.6e-61 240.7 169 69.8
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 2.7e-61 240.0 171 73.7
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 4.6e-61 239.2 169 68.6
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 4.6e-61 239.2 170 69.4
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 6.0e-61 238.8 258 54.7
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 7.9e-61 238.4 171 70.2
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 1.0e-60 238.0 171 71.9
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.0e-60 238.0 338 54.7
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 1.3e-60 237.7 170 68.8
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 1.3e-60 237.7 170 68.8
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 1.3e-60 237.7 170 68.8
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 2.3e-60 236.9 170 69.4
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 3.0e-60 236.5 169 68.0
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 3.9e-60 236.1 329 49.5
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 5.1e-60 235.7 334 54.5
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 6.7e-60 235.3 169 68.0
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 8.7e-60 235.0 253 59.3
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.1e-59 234.6 169 71.0
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 1.5e-59 234.2 168 72.6
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.5e-59 234.2 161 72.0
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.9e-59 233.8 255 55.3
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 1.9e-59 233.8 171 69.6
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 5.7e-59 232.3 166 71.1
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 9.7e-59 231.5 337 53.7
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 9.7e-59 231.5 169 71.6
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 1.3e-58 231.1 334 54.5
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.6e-58 230.7 168 72.6
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 4.8e-58 229.2 170 71.2
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.1e-57 228.0 170 69.4
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 1.1e-57 228.0 171 68.4
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.1e-57 228.0 208 60.6
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 1.8e-57 227.3 160 70.6
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 1.8e-57 227.3 160 70.6
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 5.3e-57 225.7 167 68.9
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 3.4e-56 223.0 167 68.3
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 4.5e-56 222.6 171 66.1
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 1.3e-55 221.1 160 68.8
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 1.3e-55 221.1 161 70.2
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 1.3e-55 221.1 169 68.0
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 1.7e-55 220.7 169 69.2
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 2.2e-55 220.3 171 67.8
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.2e-55 220.3 171 67.8
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 6.5e-55 218.8 167 70.1
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.4e-54 217.6 167 68.9
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 2.5e-54 216.9 169 68.0
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 3.2e-54 216.5 330 48.5
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 4.2e-54 216.1 207 58.5
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 1.6e-53 214.2 159 71.7
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 2.1e-53 213.8 328 50.3
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 2.1e-53 213.8 165 68.5
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 3.6e-53 213.0 167 66.5
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 6.1e-53 212.2 159 69.8
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 1.3e-52 211.1 159 69.8
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.9e-51 207.2 165 65.5
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 1.7e-50 204.1 172 63.4
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.2e-50 203.8 161 67.1
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.8e-50 203.4 161 66.5
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 8.2e-50 201.8 357 45.7
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 1.1e-49 201.4 197 59.4
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 2.2e-47 193.7 168 60.1
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 5.0e-47 192.6 203 64.5
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 5.0e-47 192.6 331 50.8
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 1.2e-45 188.0 248 47.6
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 5.1e-44 182.6 167 57.5
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 2.6e-43 180.3 168 57.1
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 4.4e-43 179.5 124 72.6
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.3e-42 177.9 171 60.2
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 8.2e-42 175.3 132 67.4
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 8.2e-42 175.3 132 67.4
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 1.8e-41 174.1 172 55.8
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 3.1e-41 173.3 124 72.6
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 9.1e-41 171.8 204 50.0
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 1.4e-36 157.9 117 72.6
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 5.7e-35 152.5 124 66.1
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 4.1e-33 146.4 104 71.2
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 3.5e-32 143.3 184 59.2
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 2.3e-28 130.6 170 44.1
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 7.5e-27 125.6 110 65.5
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 4.1e-25 119.8 169 42.0
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 4.7e-21 106.3 64 84.4
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 1.8e-20 104.4 118 54.2
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 2.0e-19 100.9 71 73.2
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 5.0e-15 86.3 73 65.8
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.0e-12 78.6 107 48.6
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 1.2e-11 75.1 127 45.7
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 4.9e-10 69.7 128 39.1
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 6.3e-10 69.3 40 80.0
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 1.4e-09 68.2 39 82.1
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.4e-09 67.4 39 79.5
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 2.4e-09 67.4 39 82.1
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 9.2e-09 65.5 140 37.9
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 3.5e-08 63.5 126 46.8
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 7.8e-08 62.4 76 53.9
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 6.6e-07 59.3 60 51.7


User provided reference genes

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