Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g01300 Coffea canephora HOM05D006237 ORTHO05D002967 6.4e-41 170.2 82 100.0
MD15G1412900 Malus domestica HOM05D006237 ORTHO05D002967 6.9e-19 97.1 68 75.0
MD09G1200300 Malus domestica HOM05D006237 ORTHO05D002967 1.5e-18 95.9 68 73.5
Prupe.3G056900 Prunus persica HOM05D006237 ORTHO05D002967 1.5e-18 95.9 68 73.5
Cc02_g29180 Coffea canephora HOM05D006237 ORTHO05D002967 2.0e-18 95.5 68 75.0
Cpa.g.sc1.394 Carica papaya HOM05D006237 ORTHO05D002967 2.6e-18 95.1 68 75.0
ClCG01G001020 Citrullus lanatus HOM05D006237 ORTHO05D002967 3.4e-18 94.7 68 73.5
FvH4_6g32580 Fragaria vesca HOM05D006237 ORTHO05D002967 3.4e-18 94.7 68 72.1
FAN02G0617 Fragaria x ananassa HOM05D006237 ORTHO05D002967 3.4e-18 94.7 68 72.1
FAN05G1350 Fragaria x ananassa HOM05D006237 ORTHO05D002967 3.4e-18 94.7 68 72.1
FAN05G1909 Fragaria x ananassa HOM05D006237 ORTHO05D002967 3.4e-18 94.7 68 72.1
THA.LOC104821384 Tarenaya hassleriana HOM05D006237 ORTHO05D002967 4.5e-18 94.4 68 73.5
MELO3C005830.2 Cucumis melo HOM05D006237 ORTHO05D002967 7.6e-18 93.6 68 73.5
vmacro12929 Vaccinium macrocarpon HOM05D006237 ORTHO05D002967 7.6e-18 93.6 68 72.1
BcaC07g39385 Brassica carinata HOM05D006237 ORTHO05D002967 1.0e-17 93.2 68 72.1
A06p18660 Brassica napus HOM05D006237 ORTHO05D002967 1.0e-17 93.2 68 72.1
C08p24080 Brassica napus HOM05D006237 ORTHO05D002967 1.0e-17 93.2 68 72.1
BolC8t50029H Brassica oleracea HOM05D006237 ORTHO05D002967 1.0e-17 93.2 68 72.1
FAN14G2466 Fragaria x ananassa HOM05D006237 ORTHO05D002967 1.0e-17 93.2 68 70.6
Actinidia34142 Actinidia chinensis HOM05D006237 ORTHO05D002967 1.3e-17 92.8 68 70.6
BcaB01g00750 Brassica carinata HOM05D006237 ORTHO05D002967 1.3e-17 92.8 60 78.3
Phvul.011G049550 Phaseolus vulgaris HOM05D006237 ORTHO05D002967 1.3e-17 92.8 69 69.6
Phvul.011G076300 Phaseolus vulgaris HOM05D006237 ORTHO05D002967 1.3e-17 92.8 69 69.6
QL09p013331 Quercus lobata HOM05D006237 ORTHO05D002967 1.3e-17 92.8 59 78.0
Sp5g12990 Schrenkiella parvula HOM05D006237 ORTHO05D002967 1.3e-17 92.8 60 78.3
Atru.chr1.396 Acer truncatum HOM05D006237 ORTHO05D002967 1.7e-17 92.4 68 70.6
AL5G28600 Arabidopsis lyrata HOM05D006237 ORTHO05D002967 1.7e-17 92.4 68 72.1
AT3G49080 Arabidopsis thaliana HOM05D006237 ORTHO05D002967 1.7e-17 92.4 68 72.1
Carub.0005s1528 Capsella rubella HOM05D006237 ORTHO05D002967 1.7e-17 92.4 68 72.1
CiPaw.15G152100 Carya illinoinensis HOM05D006237 ORTHO05D002967 1.7e-17 92.4 68 69.1
DCAR_027497 Daucus carota HOM05D006237 ORTHO05D002967 1.7e-17 92.4 68 72.1
Aa31LG4G17550 Aethionema arabicum HOM05D006237 ORTHO05D002967 2.2e-17 92.0 68 72.1
CARHR157920 Cardamine hirsuta HOM05D006237 ORTHO05D002967 2.2e-17 92.0 68 72.1
Thhalv10010396m.g Eutrema salsugineum HOM05D006237 ORTHO05D002967 2.2e-17 92.0 68 72.1
Glyma.11G094400 Glycine max HOM05D006237 ORTHO05D002967 2.2e-17 92.0 68 70.6
Glyma.12G020800 Glycine max HOM05D006237 ORTHO05D002967 2.2e-17 92.0 68 70.6
Lj4A176T35 Lonicera japonica HOM05D006237 ORTHO05D002967 2.2e-17 92.0 68 70.6
Potri.012G144700 Populus trichocarpa HOM05D006237 ORTHO05D002967 2.2e-17 92.0 68 70.6
Ca_08896_v3 Cicer arietinum L. HOM05D006237 ORTHO05D002967 2.9e-17 91.7 68 70.6
CsaV3_5G001160 Cucumis sativus L. HOM05D006237 ORTHO05D002967 2.9e-17 91.7 68 70.6
PGR142G0430 Punica granatum HOM05D006237 ORTHO05D002967 2.9e-17 91.7 68 72.1
Rhsim03G0189600 Rhododendron simsii HOM05D006237 ORTHO05D002967 2.9e-17 91.7 71 69.0
RcHm_v2.0_Chr2g0141031 Rosa chinensis HOM05D006237 ORTHO05D002967 2.9e-17 91.7 68 69.1
Sabra12G0108700 Salix brachista HOM05D006237 ORTHO05D002967 2.9e-17 91.7 67 70.1
TPR.G21017 Trifolium pratense HOM05D006237 ORTHO05D002967 2.9e-17 91.7 68 70.6
Lj3g0001662 Lotus japonicus HOM05D006237 ORTHO05D002967 3.8e-17 91.3 68 70.6
Cfa016275 Carpinus fangiana HOM05D006237 ORTHO05D002967 4.9e-17 90.9 68 69.1
Manes.14G023800 Manihot esculenta HOM05D006237 ORTHO05D002967 4.9e-17 90.9 68 70.6
Peaxi162Scf00078g00351 Petunia axillaris HOM05D006237 ORTHO05D002967 4.9e-17 90.9 68 70.6
Solyc10g080160.2 Solanum lycopersicum HOM05D006237 ORTHO05D002967 4.9e-17 90.9 71 67.6
Medtr3g078370 Medicago truncatula HOM05D006237 ORTHO05D002967 6.5e-17 90.5 68 69.1
Dinv35235 Davidia involucrata HOM05D006237 ORTHO05D002967 8.4e-17 90.1 59 76.3
PSO566G0038 Papaver somniferum HOM05D006237 ORTHO05D002967 8.4e-17 90.1 68 70.6
MSTRG.27097 Avicennia marina HOM05D006237 ORTHO05D002967 1.1e-16 89.7 73 68.5
Eucgr.K00287 Eucalyptus grandis HOM05D006237 ORTHO05D002967 1.1e-16 89.7 68 70.6
Sopen10g030770 Solanum pennellii HOM05D006237 ORTHO05D002967 1.1e-16 89.7 68 69.1
PGSC0003DMG400023687 Solanum tuberosum HOM05D006237 ORTHO05D002967 1.1e-16 89.7 68 69.1
TAR629G2491 Trochodendron aralioides HOM05D006237 ORTHO05D002967 1.4e-16 89.4 68 69.1
arahy.Tifrunner.gnm1.ann1.B3F3VS Arachis hypogaea HOM05D006237 ORTHO05D002967 1.9e-16 89.0 68 67.6
arahy.Tifrunner.gnm1.ann1.C9TN30 Arachis hypogaea HOM05D006237 ORTHO05D002967 1.9e-16 89.0 68 67.6
CSS0013329 Camellia sinensis var. sinensis HOM05D006237 ORTHO05D002967 1.9e-16 89.0 68 70.6
Migut.F00315 Erythranthe guttata HOM05D006237 ORTHO05D002967 1.9e-16 89.0 73 68.5
Gohir.A09G129100 Gossypium hirsutum HOM05D006237 ORTHO05D002967 1.9e-16 89.0 68 70.6
Gohir.D09G125100 Gossypium hirsutum HOM05D006237 ORTHO05D002967 1.9e-16 89.0 68 70.6
Nitab4.5_0005550g0040 Nicotiana tabacum HOM05D006237 ORTHO05D002967 1.9e-16 89.0 68 69.1
Os07g0658200 Oryza sativa ssp. japonica HOM05D006237 ORTHO05D002967 1.9e-16 89.0 68 69.1
PSO173G0153 Papaver somniferum HOM05D006237 ORTHO05D002967 1.9e-16 89.0 68 69.1
SGA_v2.0_scaffold44G16742 Striga asiatica HOM05D006237 ORTHO05D002967 1.9e-16 89.0 73 67.1
Psat6g075200 Pisum sativum HOM05D006237 ORTHO05D002967 2.5e-16 88.6 68 66.2
Thecc.05G176100 Theobroma cacao HOM05D006237 ORTHO05D002967 2.5e-16 88.6 68 70.6
CANSAT54G1461 Cannabis sativa HOM05D006237 ORTHO05D002967 3.2e-16 88.2 68 67.6
FAN09G4095 Fragaria x ananassa HOM05D006237 ORTHO05D002967 3.2e-16 88.2 68 67.6
TWI12G0168 Tripterygium wilfordii HOM05D006237 ORTHO05D002967 3.2e-16 88.2 68 67.6
CAN.G65.182 Capsicum annuum HOM05D006237 ORTHO05D002967 4.2e-16 87.8 62 72.6
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 4.2e-16 87.8 69 65.2
Lalb_Chr01g0001091 Lupinus albus HOM05D006237 ORTHO05D002967 4.2e-16 87.8 68 66.2
MBI16_g19591_MAGBIO Magnolia biondii HOM05D006237 ORTHO05D002967 4.2e-16 87.8 68 66.2
Aqoxy7G01479 Aquilegia oxysepala HOM05D006237 ORTHO05D002967 7.1e-16 87.0 68 67.6
Lalb_Chr19g0139751 Lupinus albus HOM05D006237 ORTHO05D002967 7.1e-16 87.0 68 64.7
Sed0010472 Sechium edule HOM05D006237 ORTHO05D002967 7.1e-16 87.0 68 67.6
SEGI_03568 Sequoiadendron giganteum HOM05D006237 ORTHO05D002967 7.1e-16 87.0 60 71.7
TWI56G0599 Tripterygium wilfordii HOM05D006237 ORTHO05D002967 7.1e-16 87.0 68 69.1
GSVIVG01036122001 Vitis vinifera HOM05D006237 ORTHO05D002967 7.1e-16 87.0 68 67.6
Lsat_1_v5_gn_4_66521 Lactuca sativa HOM05D006237 ORTHO05D002967 9.3e-16 86.7 73 61.6
Nn1g09125 Nelumbo nucifera HOM05D006237 ORTHO05D002967 9.3e-16 86.7 68 67.6
Oeu022599.1 Olea europaea HOM05D006237 ORTHO05D002967 9.3e-16 86.7 68 67.6
ECA248G0219 Erigeron canadensis HOM05D006237 ORTHO05D002967 1.2e-15 86.3 69 66.7
HanXRQChr02g0055961 Helianthus annuus HOM05D006237 ORTHO05D002967 1.2e-15 86.3 74 63.5
Zm00001eb329680 Zea mays HOM05D006237 ORTHO05D002967 1.2e-15 86.3 68 66.2
HPP92_005582 Vanilla planifolia HOM05D006237 ORTHO05D002967 1.6e-15 85.9 68 67.6
Duzib128G1632 Durio zibethinus HOM05D006237 ORTHO05D002967 2.1e-15 85.5 68 67.6
unitig_0.g1076 Utricularia gibba HOM05D006237 ORTHO05D002967 2.1e-15 85.5 59 72.9
BraA06t24944Z Brassica rapa HOM05D006237 ORTHO05D002967 2.7e-15 85.1 92 53.3
EL10Ac2g03563 Beta vulgaris HOM05D006237 ORTHO05D002967 3.5e-15 84.7 71 66.2
ATR0680G220 Amborella trichopoda HOM05D006237 ORTHO05D002967 6.0e-15 84.0 68 66.2
AUR62020779 Chenopodium quinoa HOM05D006237 ORTHO05D002967 1.0e-14 83.2 68 67.6
AUR62027921 Chenopodium quinoa HOM05D006237 ORTHO05D002967 1.0e-14 83.2 68 67.6
Ah.16g108280 Amaranthus hybridus HOM05D006237 ORTHO05D002967 1.3e-14 82.8 68 67.6
Pp3c4_6350 Physcomitrium patens HOM05D006237 ORTHO05D002967 7.4e-13 77.0 60 66.7
Mapoly0187s0001 Marchantia polymorpha HOM05D006237 ORTHO05D002967 8.2e-12 73.6 60 65.0
CBR_g21848 Chara braunii HOM05D006237 ORTHO05D002967 1.8e-11 72.4 60 63.3
Cc00_g01430 Coffea canephora HOM05D062735 ORTHO05D002967 4.0e-11 71.2 36 91.7
Cc00_g17590 Coffea canephora HOM05D062735 ORTHO05D002967 4.0e-11 71.2 36 91.7
SMO358G0638 Selaginella moellendorffii HOM05D006237 ORTHO05D002967 4.0e-11 71.2 60 60.0
BcaB06g29234 Brassica carinata HOM05D010908 ORTHO05D002967 3.4e-10 68.2 81 49.4
Haze_27642 Corylus avellana HOM05D006237 ORTHO05D002967 7.6e-10 67.0 60 60.0
MCO02G196 Micromonas commoda HOM05D006237 ORTHO05D002967 1.3e-09 66.2 60 53.3
BcaB01g00753 Brassica carinata HOM05D002075 ORTHO05D001225 1.1e-08 63.2 50 62.0
HPP92_005592 Vanilla planifolia HOM05D006237 ORTHO05D002967 1.1e-08 63.2 61 57.4
Oeu048745.1 Olea europaea HOM05D006237 ORTHO05D002967 1.9e-08 62.4 53 64.2
Oeu004113.1 Olea europaea HOM05D006237 ORTHO05D002967 7.1e-08 60.5 68 52.9
PRCOL_00006480 Prasinoderma coloniale HOM05D006237 ORTHO05D002967 7.1e-08 60.5 60 53.3


User provided reference genes

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