Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 2.4e-96 355.5 181 100.0
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 3.8e-86 321.6 179 91.6
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.7e-73 279.6 174 80.5
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 2.4e-72 275.8 173 79.8
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 4.1e-72 275.0 169 82.8
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 4.1e-72 275.0 173 78.0
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 7.0e-72 274.2 172 81.4
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.5e-71 273.1 174 77.0
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.6e-71 272.3 173 76.9
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.5e-71 271.9 174 78.2
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 4.5e-71 271.6 183 76.0
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 5.9e-71 271.2 173 76.3
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 5.9e-71 271.2 173 80.3
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 7.7e-71 270.8 183 76.0
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 7.7e-71 270.8 173 76.9
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 2.9e-70 268.9 170 82.4
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 2.9e-70 268.9 183 76.0
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 2.9e-70 268.9 183 76.0
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 3.8e-70 268.5 180 77.2
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.0e-70 268.1 173 78.0
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 5.0e-70 268.1 169 79.3
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 5.0e-70 268.1 172 76.2
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 5.0e-70 268.1 172 76.2
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 5.0e-70 268.1 173 78.6
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 6.5e-70 267.7 175 77.1
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 6.5e-70 267.7 169 79.3
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.4e-69 266.5 183 74.9
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.9e-69 266.2 174 79.3
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.9e-69 266.2 183 75.4
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 5.5e-69 264.6 182 75.3
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.2e-68 263.5 173 76.9
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 1.2e-68 263.5 173 76.9
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 6.1e-68 261.2 173 78.0
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 8.0e-68 260.8 174 78.2
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 8.0e-68 260.8 174 78.2
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.0e-67 260.4 174 78.2
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.4e-67 260.0 173 76.3
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.8e-67 259.6 173 75.7
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.9e-67 258.5 169 78.1
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 3.9e-67 258.5 174 74.7
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 3.9e-67 258.5 172 76.7
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 5.2e-67 258.1 163 79.1
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 5.2e-67 258.1 180 72.8
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.7e-67 257.7 173 74.6
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.7e-67 257.7 174 77.6
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.1e-66 256.9 173 74.0
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.1e-66 256.9 173 75.1
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 1.1e-66 256.9 168 76.2
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.1e-66 256.9 168 76.2
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.5e-66 256.5 169 77.5
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.5e-66 256.5 178 73.6
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.0e-66 256.1 168 77.4
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.3e-66 255.4 168 75.6
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.4e-66 255.0 173 74.6
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 4.4e-66 255.0 178 74.2
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 4.4e-66 255.0 174 74.1
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 5.7e-66 254.6 172 73.8
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 7.4e-66 254.2 173 74.0
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 7.4e-66 254.2 168 75.6
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 9.7e-66 253.8 172 75.6
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 1.3e-65 253.4 172 75.6
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 1.3e-65 253.4 172 75.6
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.7e-65 253.1 168 74.4
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.2e-65 252.7 178 73.0
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 2.8e-65 252.3 172 75.0
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 2.8e-65 252.3 172 75.0
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 2.8e-65 252.3 183 72.1
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 3.7e-65 251.9 191 70.2
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 3.7e-65 251.9 175 72.6
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 8.2e-65 250.8 181 71.3
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.1e-64 250.4 169 76.9
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.1e-64 250.4 169 76.9
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 2.4e-64 249.2 172 73.8
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.1e-64 248.8 168 73.8
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 5.3e-64 248.1 172 72.1
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 5.3e-64 248.1 176 73.3
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 7.0e-64 247.7 172 73.3
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 9.1e-64 247.3 163 77.9
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.6e-63 246.5 180 72.8
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.6e-63 245.7 172 73.8
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 7.7e-63 244.2 178 71.3
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.0e-62 243.8 178 73.0
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.0e-62 243.8 172 73.8
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.3e-62 243.4 175 72.0
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 1.3e-62 243.4 174 73.6
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.7e-62 243.0 172 72.1
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 3.8e-62 241.9 178 70.8
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 5.0e-62 241.5 172 72.1
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 6.5e-62 241.1 178 69.7
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 8.5e-62 240.7 178 70.2
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.1e-61 240.4 174 72.4
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.5e-61 240.0 174 71.8
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 2.5e-61 239.2 181 70.2
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 2.5e-61 239.2 181 70.2
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 2.5e-61 239.2 169 73.4
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 4.2e-61 238.4 171 73.7
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 5.5e-61 238.0 176 72.2
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 5.5e-61 238.0 170 70.6
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 9.4e-61 237.3 177 70.6
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 9.4e-61 237.3 178 69.1
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.2e-60 236.9 185 70.3
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.7e-60 235.7 177 70.1
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 8.0e-60 234.2 168 69.6
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.5e-58 229.9 136 83.1
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 1.5e-58 229.9 172 70.3
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 2.6e-58 229.2 181 69.6
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.7e-57 226.5 175 69.1
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.2e-57 226.1 176 68.8
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.7e-57 225.3 175 69.7
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 3.7e-57 225.3 175 68.6
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 3.7e-57 225.3 175 69.7
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 6.3e-57 224.6 173 69.4
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 8.3e-57 224.2 168 68.5
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 8.3e-57 224.2 174 68.4
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 4.1e-56 221.9 172 64.5
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 5.3e-56 221.5 173 68.8
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 9.1e-56 220.7 154 73.4
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.2e-55 220.3 176 67.6
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.2e-55 220.3 172 66.9
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.2e-55 220.3 155 70.3
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 1.6e-55 219.9 174 67.8
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 4.5e-55 218.4 175 66.9
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 7.7e-55 217.6 174 63.2
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.7e-54 216.5 253 50.2
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 2.9e-54 215.7 147 72.1
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 4.2e-53 211.8 171 65.5
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 7.2e-53 211.1 188 62.2
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 6.1e-52 208.0 137 73.7
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.4e-51 206.8 154 71.4
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 1.5e-50 203.4 172 62.8
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 2.8e-49 199.1 118 81.4
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.0e-46 188.3 167 62.9
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 6.6e-46 188.0 117 82.1
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 3.6e-44 182.2 177 59.9
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 4.7e-44 181.8 153 64.7
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 4.0e-43 178.7 168 56.5
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 5.2e-43 178.3 177 55.9
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 2.0e-42 176.4 178 55.6
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.7e-41 173.3 182 51.6
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 1.8e-40 169.9 143 58.7
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.3e-35 152.9 86 83.7
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.5e-34 150.2 176 47.7
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.9e-33 145.2 83 83.1
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.4e-32 141.7 83 79.5
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 9.2e-32 141.0 174 47.7
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.6e-31 140.2 85 82.4
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 6.0e-31 138.3 128 57.0
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.3e-30 137.1 109 68.8
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 8.0e-28 127.9 138 55.1
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.4e-26 122.5 104 64.4
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 3.5e-23 112.5 128 42.2
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.7e-22 110.2 90 66.7
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 2.5e-21 106.3 126 46.0
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 9.5e-21 104.4 100 59.0
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 9.5e-21 104.4 100 59.0
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.8e-19 100.1 85 60.0
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.1e-19 99.4 105 42.9
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 6.8e-19 98.2 159 38.4
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.7e-15 86.3 43 90.7
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 9.6e-13 77.8 80 51.2
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 2.4e-11 73.2 65 58.5
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 8.9e-11 71.2 90 36.7
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 3.8e-09 65.9 85 45.9
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.1e-08 64.3 79 48.1
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.4e-08 63.9 190 32.6
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 5.1e-06 55.5 109 42.2
MBI13_g11352_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 8.7e-06 54.7 52 53.8


User provided reference genes

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