Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g16270 Coffea canephora HOM05D001184 ORTHO05D007940 2.3e-30 134.8 62 100.0
Cc03_g16250 Coffea canephora HOM05D001184 ORTHO05D007940 1.6e-20 102.1 48 100.0
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 3.0e-14 81.3 49 73.5
Manes.01G008600 Manihot esculenta HOM05D001184 ORTHO05D007940 5.0e-14 80.5 49 75.5
Oeu061890.1 Olea europaea HOM05D001184 ORTHO05D007940 5.0e-14 80.5 49 73.5
Nn8g41273 Nelumbo nucifera HOM05D001184 ORTHO05D007940 6.6e-14 80.1 49 75.5
Actinidia39243 Actinidia chinensis HOM05D001184 ORTHO05D007940 1.1e-13 79.3 57 68.4
ATR0582G097 Amborella trichopoda HOM05D001184 ORTHO05D007940 1.9e-13 78.6 49 73.5
Nitab4.5_0001070g0010 Nicotiana tabacum HOM05D001184 ORTHO05D007940 2.5e-13 78.2 49 73.5
vmacro10998 Vaccinium macrocarpon HOM05D001184 ORTHO05D007940 3.3e-13 77.8 48 75.0
RcHm_v2.0_Chr2g0084251 Rosa chinensis HOM05D001184 ORTHO05D007940 5.6e-13 77.0 49 71.4
arahy.Tifrunner.gnm1.ann1.L6FVUL Arachis hypogaea HOM05D001184 ORTHO05D007940 7.3e-13 76.6 53 67.9
MSTRG.9256 Avicennia marina HOM05D001184 ORTHO05D007940 1.6e-12 75.5 49 69.4
COL.COLO4_19508 Corchorus olitorius HOM05D001184 ORTHO05D007940 1.6e-12 75.5 49 67.3
Sc25g0002320 Simmondsia chinensis HOM05D001184 ORTHO05D007940 1.6e-12 75.5 49 71.4
Thecc.10G189200 Theobroma cacao HOM05D001184 ORTHO05D007940 1.6e-12 75.5 49 71.4
Haze_11089 Corylus avellana HOM05D001184 ORTHO05D007940 2.1e-12 75.1 49 75.5
FvH4_1g00030 Fragaria vesca HOM05D001184 ORTHO05D007940 2.1e-12 75.1 49 69.4
FAN23G2940 Fragaria x ananassa HOM05D001184 ORTHO05D007940 2.1e-12 75.1 49 69.4
FAN26G1600 Fragaria x ananassa HOM05D001184 ORTHO05D007940 2.1e-12 75.1 49 69.4
FAN28G2093 Fragaria x ananassa HOM05D001184 ORTHO05D007940 2.1e-12 75.1 49 69.4
Gohir.D10G199900 Gossypium hirsutum HOM05D001184 ORTHO05D007940 2.1e-12 75.1 49 71.4
Prupe.6G126300 Prunus persica HOM05D001184 ORTHO05D007940 2.1e-12 75.1 49 73.5
CANSAT56G3362 Cannabis sativa HOM05D001184 ORTHO05D007940 2.8e-12 74.7 49 67.3
DCAR_023795 Daucus carota HOM05D001184 ORTHO05D007940 2.8e-12 74.7 49 73.5
MD11G1171300 Malus domestica HOM05D001184 ORTHO05D007940 2.8e-12 74.7 55 65.5
Peaxi162Scf01205g00178 Petunia axillaris HOM05D001184 ORTHO05D007940 2.8e-12 74.7 49 71.4
unitig_0.g2410 Utricularia gibba HOM05D001184 ORTHO05D007940 2.8e-12 74.7 49 67.3
Aqoxy1G00518 Aquilegia oxysepala HOM05D001184 ORTHO05D007940 3.6e-12 74.3 49 69.4
Medtr4g040350 Medicago truncatula HOM05D001184 ORTHO05D007940 3.6e-12 74.3 49 71.4
CiPaw.02G126300 Carya illinoinensis HOM05D001184 ORTHO05D007940 4.7e-12 73.9 49 73.5
Cfa008543 Carpinus fangiana HOM05D001184 ORTHO05D007940 6.2e-12 73.6 49 73.5
Gohir.A10G192100 Gossypium hirsutum HOM05D001184 ORTHO05D007940 6.2e-12 73.6 49 69.4
MD03G1140600 Malus domestica HOM05D001184 ORTHO05D007940 6.2e-12 73.6 49 71.4
arahy.Tifrunner.gnm1.ann1.X99BTJ Arachis hypogaea HOM05D001184 ORTHO05D007940 8.1e-12 73.2 48 70.8
PSO675G0811 Papaver somniferum HOM05D001184 ORTHO05D007940 8.1e-12 73.2 49 61.2
Glyma.12G009400 Glycine max HOM05D001184 ORTHO05D007940 1.1e-11 72.8 49 69.4
Gorai.011G224100 Gossypium raimondii HOM05D001184 ORTHO05D007940 1.1e-11 72.8 49 69.4
VMungo1127G1164 Vigna mungo HOM05D001184 ORTHO05D007940 1.4e-11 72.4 49 69.4
CSS0021172 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D007940 1.8e-11 72.0 50 70.0
CSS0024612 Camellia sinensis var. sinensis HOM05D001184 ORTHO05D007940 1.8e-11 72.0 50 70.0
CAN.G50.12 Capsicum annuum HOM05D001184 ORTHO05D007940 1.8e-11 72.0 49 69.4
PSO541G0555 Papaver somniferum HOM05D001184 ORTHO05D007940 1.8e-11 72.0 49 59.2
QL10p065209 Quercus lobata HOM05D001184 ORTHO05D007940 1.8e-11 72.0 48 70.8
Nitab4.5_0000348g0060 Nicotiana tabacum HOM05D001184 ORTHO05D007940 2.3e-11 71.6 49 67.3
Lalb_Chr01g0000441 Lupinus albus HOM05D001184 ORTHO05D007940 3.1e-11 71.2 49 65.3
GSVIVG01038277001 Vitis vinifera HOM05D001184 ORTHO05D007940 3.1e-11 71.2 49 71.4
Glyma.09G227400 Glycine max HOM05D001184 ORTHO05D007940 4.0e-11 70.9 49 67.3
Phvul.011G011700 Phaseolus vulgaris HOM05D001184 ORTHO05D007940 5.2e-11 70.5 49 67.3
ClCG04G002910 Citrullus lanatus HOM05D001184 ORTHO05D007940 6.8e-11 70.1 48 70.8
CDE02G3951 Ceratophyllum demersum HOM05D001184 ORTHO05D007940 8.9e-11 69.7 49 63.3
Os04g0303900 Oryza sativa ssp. japonica HOM05D001184 ORTHO05D007940 8.9e-11 69.7 49 61.2
EL10Ac3g06196 Beta vulgaris HOM05D001184 ORTHO05D007940 1.2e-10 69.3 49 71.4
Potri.017G000200 Populus trichocarpa HOM05D001184 ORTHO05D007940 1.2e-10 69.3 50 70.0
Sabra17G0005100 Salix brachista HOM05D001184 ORTHO05D007940 1.2e-10 69.3 50 70.0
SalBow3G2409 Salvia bowleyana HOM05D001184 ORTHO05D007940 1.2e-10 69.3 50 68.0
Zm00001eb419200 Zea mays HOM05D001184 ORTHO05D007940 1.2e-10 69.3 49 63.3
Duzib114G1043 Durio zibethinus HOM05D001184 ORTHO05D007940 1.5e-10 68.9 49 67.3
MELO3C003269.2 Cucumis melo HOM05D001184 ORTHO05D007940 3.4e-10 67.8 49 65.3
AUR62002513 Chenopodium quinoa HOM05D001184 ORTHO05D007940 4.4e-10 67.4 49 67.3
Ciclev10021676m.g Citrus clementina HOM05D001184 ORTHO05D007940 4.4e-10 67.4 49 65.3
Lj3g0023071 Lotus japonicus HOM05D001184 ORTHO05D007940 4.4e-10 67.4 50 68.0
TPR.G30170 Trifolium pratense HOM05D001184 ORTHO05D007940 4.4e-10 67.4 49 67.3
Lj2A407G27 Lonicera japonica HOM05D001184 ORTHO05D007940 5.8e-10 67.0 50 70.0
Atru.BG.63.p Acer truncatum HOM05D001184 ORTHO05D007940 7.5e-10 66.6 47 66.0
Hund22665 Selenicereus undatus HOM05D001184 ORTHO05D007940 7.5e-10 66.6 47 68.1
AUR62023681 Chenopodium quinoa HOM05D001184 ORTHO05D007940 9.8e-10 66.2 49 67.3
Sed0020246 Sechium edule HOM05D001184 ORTHO05D007940 1.3e-09 65.9 49 67.3
CDE02G4139 Ceratophyllum demersum HOM05D001184 ORTHO05D007940 1.7e-09 65.5 47 57.4
Lj2A405G34 Lonicera japonica HOM05D001184 ORTHO05D007940 1.7e-09 65.5 50 68.0
THA.LOC104802526 Tarenaya hassleriana HOM05D001184 ORTHO05D007940 2.2e-09 65.1 49 67.3
Solyc08g015960.3 Solanum lycopersicum HOM05D001184 ORTHO05D007940 2.9e-09 64.7 49 63.3
Sopen08g006220 Solanum pennellii HOM05D001184 ORTHO05D007940 2.9e-09 64.7 49 63.3
HanXRQChr05g0143251 Helianthus annuus HOM05D001184 ORTHO05D007940 3.7e-09 64.3 50 64.0
SEGI_18038 Sequoiadendron giganteum HOM05D001184 ORTHO05D007940 3.7e-09 64.3 49 61.2
THA.LOC104802529 Tarenaya hassleriana HOM05D001184 ORTHO05D007940 8.3e-09 63.2 49 65.3
PGR042G0781 Punica granatum HOM05D001184 ORTHO05D007940 1.9e-08 62.0 58 58.6
BcaC07g40403 Brassica carinata HOM05D001184 ORTHO05D007940 3.2e-08 61.2 49 59.2
Sp5g03200 Schrenkiella parvula HOM05D001184 ORTHO05D007940 3.2e-08 61.2 49 57.1
AL5G42160 Arabidopsis lyrata HOM05D001184 ORTHO05D007940 4.1e-08 60.8 49 57.1
HPP92_007221 Vanilla planifolia HOM05D001184 ORTHO05D007940 4.1e-08 60.8 49 59.2
Migut.G00791 Erythranthe guttata HOM05D001184 ORTHO05D007940 5.4e-08 60.5 50 62.0
BcaC07g40536 Brassica carinata HOM05D001184 ORTHO05D007940 9.2e-08 59.7 49 57.1
BolC8t51102H Brassica oleracea HOM05D001184 ORTHO05D007940 9.2e-08 59.7 49 57.1
AT3G59980 Arabidopsis thaliana HOM05D001184 ORTHO05D007940 2.1e-07 58.5 49 57.1
Thhalv10006155m.g Eutrema salsugineum HOM05D001184 ORTHO05D007940 2.1e-07 58.5 49 55.1
CARHR170300 Cardamine hirsuta HOM05D001184 ORTHO05D007940 4.6e-07 57.4 49 57.1
Dinv24736 Davidia involucrata HOM05D001184 ORTHO05D007940 6.0e-07 57.0 33 75.8
Manes.01G008300 Manihot esculenta HOM05D001184 ORTHO05D007940 6.0e-07 57.0 31 77.4
AagrBONN_evm.TU.Sc2ySwM_228.3910 Anthoceros agrestis HOM05D001184 ORTHO05D007940 7.8e-07 56.6 49 49.0
BraA09t40661Z Brassica rapa HOM05D001184 ORTHO05D007940 7.8e-07 56.6 50 58.0
A09p52320 Brassica napus HOM05D001184 ORTHO05D007940 1.0e-06 56.2 50 58.0
Mapoly0061s0050 Marchantia polymorpha HOM05D001184 ORTHO05D007940 3.0e-06 54.7 49 53.1
Carub.0005s2671 Capsella rubella HOM05D001184 ORTHO05D007940 3.9e-06 54.3 50 56.0
Aa31LG10G14200 Aethionema arabicum HOM05D001184 ORTHO05D007940 5.1e-06 53.9 49 51.0
Aa31LG10G14210 Aethionema arabicum HOM05D003545 ORTHO05D004720 5.1e-06 53.9 49 51.0
C08p34980 Brassica napus HOM05D001184 ORTHO05D007940 6.6e-06 53.5 54 51.9


User provided reference genes

Program Settings