Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 2.5e-177 625.5 365 100.0
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 2.0e-158 562.8 411 85.2
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.5e-129 466.8 409 73.1
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 3.3e-129 465.7 412 70.1
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 9.6e-129 464.2 411 68.4
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.6e-128 463.4 412 66.7
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 2.2e-125 453.0 411 66.2
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 4.0e-119 432.2 411 63.0
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.2e-118 430.6 410 64.6
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.2e-116 422.2 411 62.8
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.7e-115 419.5 412 64.1
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 7.9e-115 417.9 411 62.3
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.3e-114 417.2 408 63.2
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 3.0e-114 416.0 412 62.9
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.5e-113 413.7 412 63.3
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.9e-113 413.3 412 63.6
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 7.3e-113 411.4 409 64.8
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 9.6e-113 411.0 412 63.1
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 3.6e-112 409.1 409 63.6
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 8.1e-112 407.9 409 61.4
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.2e-110 404.1 407 61.4
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 3.4e-110 402.5 415 61.0
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.4e-110 402.5 412 63.6
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.8e-110 401.7 412 63.6
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 9.9e-110 401.0 407 61.7
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 2.2e-109 399.8 415 61.9
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 8.4e-109 397.9 417 60.9
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 7.1e-108 394.8 323 72.8
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.2e-107 394.0 407 61.7
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.2e-107 394.0 416 60.3
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.6e-107 393.7 411 63.5
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.6e-107 393.7 411 59.6
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 3.9e-106 389.0 411 60.1
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 5.1e-106 388.7 398 61.8
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 6.7e-106 388.3 410 61.5
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 8.7e-106 387.9 413 61.0
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.5e-105 387.1 404 60.6
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.9e-105 386.7 402 60.2
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 2.5e-105 386.3 411 60.6
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 3.3e-105 386.0 413 63.0
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 5.6e-105 385.2 402 60.0
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 5.6e-105 385.2 405 60.2
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.3e-104 384.0 414 58.7
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.6e-104 383.6 403 60.5
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.6e-104 383.6 403 60.0
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 3.7e-104 382.5 411 58.2
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 3.7e-104 382.5 421 60.3
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.4e-103 380.6 420 58.8
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.8e-103 380.2 358 65.4
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.8e-103 380.2 402 59.7
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 4.0e-103 379.0 411 57.9
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.2e-102 377.5 406 62.8
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.2e-102 377.5 407 59.2
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 2.6e-102 376.3 404 58.4
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 4.5e-102 375.6 415 59.5
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 5.8e-102 375.2 406 62.6
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 7.6e-102 374.8 406 62.6
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 1.0e-101 374.4 358 64.8
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.0e-101 374.4 404 61.6
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 1.7e-101 373.6 406 62.1
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.9e-101 372.9 414 57.7
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 2.9e-101 372.9 412 58.3
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 3.8e-101 372.5 405 59.0
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.9e-101 372.1 358 64.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 3.2e-100 369.4 407 55.5
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 5.5e-100 368.6 330 68.8
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 5.5e-100 368.6 312 75.0
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.2e-99 367.5 414 57.0
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.2e-99 367.5 413 58.1
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 2.1e-99 366.7 404 58.4
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.7e-99 366.3 411 57.7
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 3.5e-99 365.9 421 56.8
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 4.6e-99 365.5 422 57.1
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 4.6e-99 365.5 407 58.5
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 7.9e-99 364.8 410 57.8
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 7.9e-99 364.8 432 56.2
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.8e-98 363.6 347 64.6
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 8.7e-98 361.3 422 56.4
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-97 360.5 410 57.3
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 3.3e-97 359.4 422 55.9
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 4.3e-97 359.0 419 55.6
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.3e-97 359.0 410 57.3
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.3e-96 357.5 430 56.0
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 8.2e-96 354.8 397 59.4
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 1.1e-95 354.4 401 59.6
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.4e-95 354.0 414 57.2
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.5e-94 350.5 411 57.2
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 1.5e-94 350.5 325 60.3
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 3.4e-94 349.4 417 57.1
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.5e-94 349.0 396 57.3
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 4.5e-94 349.0 400 58.0
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.0e-93 347.8 328 61.9
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 2.9e-93 346.3 401 58.6
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 3.8e-93 345.9 401 59.4
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 3.2e-92 342.8 334 65.0
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 5.5e-92 342.0 433 53.3
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 9.3e-92 341.3 403 57.1
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 2.1e-91 340.1 433 53.6
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 1.0e-90 337.8 426 53.3
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.8e-90 337.0 398 57.8
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 2.3e-90 336.7 308 67.5
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 3.9e-90 335.9 439 52.4
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 5.1e-90 335.5 403 55.3
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 6.3e-88 328.6 394 53.6
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 2.4e-87 326.6 327 63.6
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 5.3e-87 325.5 433 52.2
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 5.3e-87 325.5 433 52.2
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 9.0e-87 324.7 321 56.4
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.6e-86 323.2 403 55.1
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 3.4e-86 322.8 436 51.8
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 7.7e-86 321.6 433 51.7
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 1.3e-85 320.9 336 61.6
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 2.2e-85 320.1 439 54.0
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 6.5e-85 318.5 417 53.0
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-84 317.8 401 54.4
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.7e-83 313.2 331 60.4
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 1.5e-81 307.4 400 52.2
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 2.0e-81 307.0 332 60.2
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 4.3e-81 305.8 332 60.2
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 3.7e-80 302.8 336 59.2
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 2.6e-78 296.6 394 51.0
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 3.7e-72 276.2 369 53.7
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 7.0e-71 271.9 326 52.5
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.6e-70 270.0 243 67.5
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.4e-66 257.7 377 53.3
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 3.3e-65 253.1 383 46.7
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 6.3e-64 248.8 380 50.5
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.7e-61 240.7 311 53.7
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 2.9e-61 240.0 331 45.3
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 1.2e-57 228.0 373 46.6
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.5e-54 216.5 204 62.7
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-53 214.9 398 43.7
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.9e-52 210.7 332 46.1
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 2.4e-47 193.7 250 50.0
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.9e-46 189.1 181 58.0
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.8e-42 177.6 281 49.5
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.8e-42 177.6 281 49.5
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 2.2e-40 170.6 180 57.2
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.9e-40 170.2 332 44.3
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.3e-37 161.4 207 45.9
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 2.5e-36 157.1 280 42.9
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.5e-36 157.1 321 43.3
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 4.0e-34 149.8 316 41.5
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 2.0e-33 147.5 102 75.5
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.2e-30 138.3 208 40.4
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.3e-29 134.0 175 53.1
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 5.0e-29 132.9 215 44.2
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 8.1e-27 125.6 179 51.4
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.2e-22 111.7 249 32.5
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 4.6e-22 109.8 98 62.2
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 1.0e-21 108.6 152 55.3
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 5.1e-21 106.3 123 63.4
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 6.2e-11 72.8 208 27.4
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 8.4e-08 62.4 122 37.7
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 1.4e-07 61.6 46 69.6


User provided reference genes

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