Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 1.2e-275 952.6 492 100.0
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 7.5e-129 464.9 577 49.0
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 3.0e-125 453.0 544 50.9
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 1.4e-122 444.1 531 49.2
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 1.8e-122 443.7 561 48.7
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 2.6e-121 439.9 549 50.8
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 7.6e-121 438.3 544 49.4
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 9.9e-121 438.0 517 52.4
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 1.6e-115 420.6 542 47.4
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 2.8e-115 419.9 543 49.4
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 1.4e-114 417.5 549 46.6
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 2.4e-114 416.8 542 48.5
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 4.0e-114 416.0 534 49.1
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 5.3e-114 415.6 528 48.7
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 6.9e-114 415.2 529 49.1
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 2.0e-113 413.7 642 43.5
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 5.8e-113 412.1 539 47.9
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 7.6e-113 411.8 527 49.1
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 9.9e-113 411.4 545 46.6
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 1.7e-112 410.6 537 47.5
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 2.2e-112 410.2 538 48.7
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 3.8e-112 409.5 527 46.9
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 3.8e-112 409.5 526 48.9
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 2.4e-111 406.8 546 46.3
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 2.1e-110 403.7 549 47.4
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 2.1e-110 403.7 527 46.7
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 6.0e-110 402.1 537 46.7
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 6.0e-110 402.1 531 47.8
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 1.0e-109 401.4 569 43.4
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 1.1e-108 397.9 589 45.2
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 1.8e-106 390.6 533 44.1
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 3.1e-106 389.8 528 46.0
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 9.9e-105 384.8 532 46.2
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 2.2e-104 383.6 599 42.7
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 6.4e-104 382.1 600 41.3
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 4.2e-103 379.4 528 46.0
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 2.7e-102 376.7 542 44.6
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 1.3e-101 374.4 507 45.6
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 3.0e-101 373.2 536 45.0
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 1.1e-100 371.3 543 46.0
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 1.1e-100 371.3 601 41.8
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 1.5e-100 370.9 500 46.0
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 1.5e-100 370.9 514 44.9
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 1.9e-100 370.5 530 45.5
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 9.6e-100 368.2 603 41.5
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 1.3e-99 367.9 551 44.5
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 1.3e-99 367.9 530 45.3
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 1.3e-99 367.9 566 41.5
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 2.8e-99 366.7 544 43.2
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 6.2e-99 365.5 534 44.6
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 2.4e-98 363.6 544 44.7
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 7.6e-97 358.6 542 44.6
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 6.5e-96 355.5 496 46.0
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 3.2e-95 353.2 549 43.7
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 4.2e-95 352.8 542 43.5
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 2.1e-94 350.5 533 42.4
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 4.6e-94 349.4 539 40.8
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 1.8e-93 347.4 534 42.1
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 1.9e-92 344.0 587 40.9
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 3.7e-91 339.7 473 46.3
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 1.8e-90 337.4 541 41.4
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 9.0e-90 335.1 613 39.6
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 3.4e-89 333.2 454 46.0
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 3.8e-88 329.7 458 45.6
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 1.2e-86 324.7 547 39.9
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 2.1e-86 323.9 510 42.4
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 2.7e-86 323.6 600 37.8
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 2.3e-85 320.5 539 40.3
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 1.3e-83 314.7 501 41.1
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 1.6e-83 314.3 370 51.6
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 1.0e-80 305.1 469 41.6
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 1.3e-80 304.7 564 39.4
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 6.5e-80 302.4 544 38.6
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 9.4e-79 298.5 444 42.8
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 2.1e-78 297.4 525 37.5
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 8.2e-75 285.4 561 36.0
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 1.4e-74 284.6 539 38.8
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 7.9e-70 268.9 536 33.4
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 2.7e-62 243.8 465 36.3
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 3.6e-62 243.4 436 39.0
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 1.0e-61 241.9 459 37.7
Hma1.2p1_1477F.1_g285910 Hydrangea macrophylla HOM05D007575 ORTHO05D009611 7.2e-47 192.6 420 40.7
Pp3c20_2320 Physcomitrium patens HOM05D007575 ORTHO05D009611 4.2e-39 166.8 532 28.4
Mapoly0164s0007 Marchantia polymorpha HOM05D007575 ORTHO05D009611 6.1e-38 162.9 462 29.9
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 1.5e-36 158.3 396 31.6
SalBow5G2148 Salvia bowleyana HOM05D007575 ORTHO05D009611 9.2e-34 149.1 176 50.6
SalBow5G4021 Salvia bowleyana HOM05D007575 ORTHO05D009611 9.2e-34 149.1 176 50.6
Zm00001eb198990 Zea mays HOM05D007575 ORTHO05D009611 2.5e-31 141.0 224 37.9
CSS0007449 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 3.3e-31 140.6 360 34.2
BcaB06g29288 Brassica carinata HOM05D007575 ORTHO05D009611 4.0e-29 133.7 128 52.3
Eucgr.A00051 Eucalyptus grandis HOM05D007575 ORTHO05D009611 2.6e-28 131.0 172 44.8
AagrBONN_evm.TU.Sc2ySwM_344.3290 Anthoceros agrestis HOM05D007575 ORTHO05D009611 4.4e-28 130.2 421 30.9
SMO116G0403 Selaginella moellendorffii HOM05D007575 ORTHO05D009611 5.4e-26 123.2 529 25.5
TAR633G1182 Trochodendron aralioides HOM05D007575 ORTHO05D009611 1.2e-25 122.1 176 42.0
Lsat_1_v5_gn_5_138981 Lactuca sativa HOM05D007575 ORTHO05D009611 3.5e-25 120.6 300 33.3
SEGI_03248 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 2.3e-21 107.8 168 40.5
PGSC0003DMG400021612 Solanum tuberosum HOM05D007575 ORTHO05D009611 2.6e-20 104.4 76 67.1
CBR_g123 Chara braunii HOM05D007575 ORTHO05D009611 2.5e-15 87.8 465 24.1
Gohir.A09G193001 Gossypium hirsutum HOM05D002884 ORTHO05D003178 4.1e-10 70.5 80 43.8
Sed0012052 Sechium edule HOM05D002884 ORTHO05D003178 4.6e-09 67.0 80 38.8
MELO3C006143.2 Cucumis melo HOM05D002884 ORTHO05D003178 6.0e-09 66.6 80 41.2
CsaV3_3G009230 Cucumis sativus L. HOM05D002884 ORTHO05D003178 6.0e-09 66.6 80 41.2
Gohir.A12G225400 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.3e-08 65.5 77 41.6
Gohir.D09G187200 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.3e-08 65.5 80 41.2
Gorai.006G210000 Gossypium raimondii HOM05D002884 ORTHO05D003178 1.3e-08 65.5 80 41.2
Gorai.008G244000 Gossypium raimondii HOM05D002884 ORTHO05D003178 1.3e-08 65.5 77 41.6
MBI08_g05086_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 1.7e-08 65.1 50 62.0
SGA_v2.0_scaffold144G35971 Striga asiatica HOM05D002884 ORTHO05D003178 1.7e-08 65.1 77 41.6
Gohir.D12G228000 Gossypium hirsutum HOM05D002884 ORTHO05D003178 3.9e-08 63.9 77 40.3
Sed0001920 Sechium edule HOM05D002884 ORTHO05D003178 3.9e-08 63.9 68 47.1
CiPaw.11G140600 Carya illinoinensis HOM05D002884 ORTHO05D003178 5.1e-08 63.5 76 40.8
Nn1g01376 Nelumbo nucifera HOM05D002884 ORTHO05D003178 5.1e-08 63.5 76 42.1
THA.LOC104814310 Tarenaya hassleriana HOM05D002884 ORTHO05D003178 5.1e-08 63.5 76 40.8
Lalb_Chr09g0321151 Lupinus albus HOM05D002884 ORTHO05D003178 6.6e-08 63.2 91 38.5
Potri.003G122300 Populus trichocarpa HOM05D002884 ORTHO05D003178 8.6e-08 62.8 80 40.0
Duzib205G1004 Durio zibethinus HOM05D002884 ORTHO05D003178 1.1e-07 62.4 77 40.3
Glyma.17G131100 Glycine max HOM05D002884 ORTHO05D003178 1.1e-07 62.4 77 39.0
Lj2g0016961 Lotus japonicus HOM05D002884 ORTHO05D003178 1.1e-07 62.4 77 40.3
PSO782G3187 Papaver somniferum HOM05D002884 ORTHO05D003178 1.1e-07 62.4 77 39.0
Peaxi162Scf00714g00057 Petunia axillaris HOM05D002884 ORTHO05D003178 1.1e-07 62.4 77 39.0
Lalb_Chr16g0377211 Lupinus albus HOM05D002884 ORTHO05D003178 1.5e-07 62.0 77 39.0
Solyc08g080410.3 Solanum lycopersicum HOM05D002884 ORTHO05D003178 1.5e-07 62.0 77 39.0
Sopen08g028740 Solanum pennellii HOM05D002884 ORTHO05D003178 1.5e-07 62.0 77 39.0
COL.COLO4_05264 Corchorus olitorius HOM05D002884 ORTHO05D003178 1.9e-07 61.6 77 39.0
PSO478G0346 Papaver somniferum HOM05D002884 ORTHO05D003178 1.9e-07 61.6 77 39.0
PGSC0003DMG400003048 Solanum tuberosum HOM05D002884 ORTHO05D003178 1.9e-07 61.6 76 39.5
Thecc.03G272100 Theobroma cacao HOM05D002884 ORTHO05D003178 1.9e-07 61.6 77 39.0
AT4G23040 Arabidopsis thaliana HOM05D002884 ORTHO05D003178 2.5e-07 61.2 76 38.2
MSTRG.12015 Avicennia marina HOM05D002884 ORTHO05D003178 2.5e-07 61.2 75 40.0
ClCG00G000910 Citrullus lanatus HOM05D002884 ORTHO05D003178 2.5e-07 61.2 72 44.4
ClCG00G001160 Citrullus lanatus HOM05D002884 ORTHO05D003178 2.5e-07 61.2 72 44.4
ClCG10G003770 Citrullus lanatus HOM05D002884 ORTHO05D003178 2.5e-07 61.2 72 44.4
Glyma.05G049200 Glycine max HOM05D002884 ORTHO05D003178 2.5e-07 61.2 77 37.7
Nitab4.5_0002234g0060 Nicotiana tabacum HOM05D002884 ORTHO05D003178 2.5e-07 61.2 77 39.0
Nitab4.5_0002853g0040 Nicotiana tabacum HOM05D002884 ORTHO05D003178 2.5e-07 61.2 77 39.0
SGA_v2.0_scaffold385G50454 Striga asiatica HOM05D002884 ORTHO05D003178 2.5e-07 61.2 77 39.0
HPP92_022610 Vanilla planifolia HOM05D002884 ORTHO05D003178 2.5e-07 61.2 150 29.3
CAN.G981.24 Capsicum annuum HOM05D002884 ORTHO05D003178 3.3e-07 60.8 77 39.0
Manes.01G066200 Manihot esculenta HOM05D002884 ORTHO05D003178 3.3e-07 60.8 76 38.2
AL6G46330 Arabidopsis lyrata HOM05D002884 ORTHO05D003178 4.3e-07 60.5 76 39.5
PGR042G2076 Punica granatum HOM05D002884 ORTHO05D003178 4.3e-07 60.5 77 39.0
Sc01g0008750 Simmondsia chinensis HOM05D002884 ORTHO05D003178 4.3e-07 60.5 152 29.6
VMungo1215G1054 Vigna mungo HOM05D002884 ORTHO05D003178 4.3e-07 60.5 77 36.4
AL7G30460 Arabidopsis lyrata HOM05D002884 ORTHO05D003178 5.6e-07 60.1 76 39.5
CANSAT21G2344 Cannabis sativa HOM05D002884 ORTHO05D003178 5.6e-07 60.1 77 39.0
Duzib068G1440 Durio zibethinus HOM05D002884 ORTHO05D003178 5.6e-07 60.1 77 39.0
Nn6g34230 Nelumbo nucifera HOM05D002884 ORTHO05D003178 5.6e-07 60.1 76 38.2
Aqoxy7G00426 Aquilegia oxysepala HOM05D002884 ORTHO05D003178 7.3e-07 59.7 80 36.2
Sabra03G0086200 Salix brachista HOM05D002884 ORTHO05D003178 7.3e-07 59.7 81 35.8
Sc22g0000260 Simmondsia chinensis HOM05D002884 ORTHO05D003178 7.3e-07 59.7 72 40.3
SalBow6G0746 Salvia bowleyana HOM05D002884 ORTHO05D003178 9.6e-07 59.3 72 40.3
Ciclev10019482m.g Citrus clementina HOM05D002884 ORTHO05D003178 1.2e-06 58.9 72 40.3
Gohir.D07G149800 Gossypium hirsutum HOM05D002884 ORTHO05D003178 1.2e-06 58.9 118 34.7
CSS0002116 Camellia sinensis var. sinensis HOM05D002884 ORTHO05D003178 1.6e-06 58.5 77 39.0
CSS0004594 Camellia sinensis var. sinensis HOM05D002884 ORTHO05D003178 1.6e-06 58.5 150 30.0
Dinv37684 Davidia involucrata HOM05D002884 ORTHO05D003178 1.6e-06 58.5 77 36.4
Medtr4g102810 Medicago truncatula HOM05D002884 ORTHO05D003178 1.6e-06 58.5 77 37.7
TPR.G19228 Trifolium pratense HOM05D002884 ORTHO05D003178 1.6e-06 58.5 77 37.7
Cfa012110 Carpinus fangiana HOM05D002884 ORTHO05D003178 2.1e-06 58.2 77 37.7
Duzib138G0581 Durio zibethinus HOM05D002884 ORTHO05D003178 2.1e-06 58.2 121 33.1
MD06G1073600 Malus domestica HOM05D002884 ORTHO05D003178 2.1e-06 58.2 77 37.7
Zm00001eb198600 Zea mays HOM05D002884 ORTHO05D003178 2.1e-06 58.2 75 40.0
Dinv39004 Davidia involucrata HOM05D002884 ORTHO05D003178 2.8e-06 57.8 77 36.4
Eucgr.E00535 Eucalyptus grandis HOM05D002884 ORTHO05D003178 2.8e-06 57.8 72 38.9
QL12p017410 Quercus lobata HOM05D002884 ORTHO05D003178 2.8e-06 57.8 77 35.1
Zm00001eb316320 Zea mays HOM05D002436 ORTHO05D002754 2.8e-06 57.8 70 38.6
Lalb_Chr16g0389741 Lupinus albus HOM05D002884 ORTHO05D003178 3.6e-06 57.4 77 36.4
CARHR248930 Cardamine hirsuta HOM05D002884 ORTHO05D003178 4.7e-06 57.0 108 33.3
CiPaw.12G097600 Carya illinoinensis HOM05D002884 ORTHO05D003178 4.7e-06 57.0 76 35.5
Lj8A238T60 Lonicera japonica HOM05D002884 ORTHO05D003178 4.7e-06 57.0 77 36.4
MBI04_g00304_MAGBIO Magnolia biondii HOM05D002884 ORTHO05D003178 4.7e-06 57.0 77 37.7
vmacro00201 Vaccinium macrocarpon HOM05D002884 ORTHO05D003178 4.7e-06 57.0 75 38.7
Potri.001G109500 Populus trichocarpa HOM05D002884 ORTHO05D003178 6.2e-06 56.6 145 29.7
Sabra01G0082800 Salix brachista HOM05D002884 ORTHO05D003178 6.2e-06 56.6 77 36.4
COL.COLO4_12615 Corchorus olitorius HOM05D002884 ORTHO05D003178 8.1e-06 56.2 104 31.7
Gorai.001G171400 Gossypium raimondii HOM05D002884 ORTHO05D003178 8.1e-06 56.2 118 33.9
Lalb_Chr05g0225031 Lupinus albus HOM05D002884 ORTHO05D003178 8.1e-06 56.2 77 36.4
Prupe.5G091800 Prunus persica HOM05D002884 ORTHO05D003178 8.1e-06 56.2 77 35.1
RcHm_v2.0_Chr7g0199121 Rosa chinensis HOM05D002884 ORTHO05D003178 8.1e-06 56.2 72 38.9
GSVIVG01019815001 Vitis vinifera HOM05D002884 ORTHO05D003178 8.1e-06 56.2 76 35.5


User provided reference genes

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