Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g13160 Coffea canephora HOM05D003089 ORTHO05D003544 5.3e-150 534.3 258 100.0
Cc02_g17780 Coffea canephora HOM05D003089 ORTHO05D003544 1.1e-110 403.7 199 99.0
Dinv42085 Davidia involucrata HOM05D003089 ORTHO05D003544 6.8e-89 331.3 205 79.0
Migut.B00253 Erythranthe guttata HOM05D003089 ORTHO05D003544 8.4e-87 324.3 199 78.4
Rhsim11G0174300 Rhododendron simsii HOM05D003089 ORTHO05D003544 3.2e-86 322.4 205 77.1
CSS0026532 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 5.4e-86 321.6 181 84.0
CSS0027140 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 5.4e-86 321.6 181 84.0
vmacro02128 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 5.4e-86 321.6 205 77.6
Peaxi162Scf00684g00421 Petunia axillaris HOM05D003089 ORTHO05D003544 1.0e-84 317.4 187 82.4
Actinidia00513 Actinidia chinensis HOM05D003089 ORTHO05D003544 5.1e-84 315.1 181 83.4
CAN.G566.47 Capsicum annuum HOM05D003089 ORTHO05D003544 5.1e-84 315.1 187 80.2
Oeu020770.2 Olea europaea HOM05D003089 ORTHO05D003544 5.1e-84 315.1 204 76.0
SGA_v2.0_scaffold32G13157 Striga asiatica HOM05D003089 ORTHO05D003544 1.1e-83 313.9 200 77.0
SGA_v2.0_scaffold58G20555 Striga asiatica HOM05D003089 ORTHO05D003544 1.1e-83 313.9 201 76.1
TAR622G0009 Trochodendron aralioides HOM05D003089 ORTHO05D003544 1.1e-83 313.9 181 82.9
TAR369G0923 Trochodendron aralioides HOM05D003089 ORTHO05D003544 1.5e-83 313.5 206 76.2
Nitab4.5_0000736g0060 Nicotiana tabacum HOM05D003089 ORTHO05D003544 7.3e-83 311.2 196 77.6
unitig_61.g25998 Utricularia gibba HOM05D003089 ORTHO05D003544 7.3e-83 311.2 199 74.4
Nitab4.5_0000336g0120 Nicotiana tabacum HOM05D003089 ORTHO05D003544 1.6e-82 310.1 187 79.7
SalBow6G2407 Salvia bowleyana HOM05D003089 ORTHO05D003544 1.6e-82 310.1 199 76.9
SalBow6G4859 Salvia bowleyana HOM05D003089 ORTHO05D003544 1.6e-82 310.1 199 76.9
Ciclev10027664m.g Citrus clementina HOM05D003089 ORTHO05D003544 2.1e-82 309.7 181 80.7
Nn1g03865 Nelumbo nucifera HOM05D003089 ORTHO05D003544 2.8e-82 309.3 205 74.1
Sopen11g019550 Solanum pennellii HOM05D003089 ORTHO05D003544 2.8e-82 309.3 187 79.1
QL11p043039 Quercus lobata HOM05D003089 ORTHO05D003544 4.7e-82 308.5 181 81.2
MSTRG.20096 Avicennia marina HOM05D003089 ORTHO05D003544 8.1e-82 307.8 204 74.5
Sp1g36200 Schrenkiella parvula HOM05D003089 ORTHO05D003544 8.1e-82 307.8 203 73.4
BcaB02g11071 Brassica carinata HOM05D003089 ORTHO05D003544 1.4e-81 307.0 203 72.9
Haze_02363 Corylus avellana HOM05D003089 ORTHO05D003544 1.4e-81 307.0 181 80.1
Solyc11g043130.2 Solanum lycopersicum HOM05D003089 ORTHO05D003544 3.1e-81 305.8 187 78.6
GSVIVG01031931001 Vitis vinifera HOM05D003089 ORTHO05D003544 3.1e-81 305.8 203 76.8
A05p20670 Brassica napus HOM05D003089 ORTHO05D003544 4.0e-81 305.4 203 72.9
BraA05t20975Z Brassica rapa HOM05D003089 ORTHO05D003544 4.0e-81 305.4 203 72.9
Carub.0001s3852 Capsella rubella HOM05D003089 ORTHO05D003544 4.0e-81 305.4 203 73.4
CAN.G638.23 Capsicum annuum HOM05D003089 ORTHO05D003544 4.0e-81 305.4 187 77.5
AL1G56300 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 5.2e-81 305.1 203 73.4
DCAR_003639 Daucus carota HOM05D003089 ORTHO05D003544 5.2e-81 305.1 190 75.8
BcaC05g27516 Brassica carinata HOM05D003089 ORTHO05D003544 8.9e-81 304.3 203 72.4
C05p34900 Brassica napus HOM05D003089 ORTHO05D003544 8.9e-81 304.3 203 72.4
Prupe.8G100100 Prunus persica HOM05D003089 ORTHO05D003544 8.9e-81 304.3 181 80.1
AT1G49340 Arabidopsis thaliana HOM05D003089 ORTHO05D003544 1.2e-80 303.9 203 72.9
BcaB07g33678 Brassica carinata HOM05D003089 ORTHO05D003544 1.2e-80 303.9 203 72.4
BcaC08g43133 Brassica carinata HOM05D003089 ORTHO05D003544 1.2e-80 303.9 203 72.4
A06p03880 Brassica napus HOM05D003089 ORTHO05D003544 1.2e-80 303.9 203 72.4
C06p04080 Brassica napus HOM05D003089 ORTHO05D003544 1.2e-80 303.9 203 72.4
BolC5t32215H Brassica oleracea HOM05D003089 ORTHO05D003544 1.2e-80 303.9 203 72.4
BolC6t35540H Brassica oleracea HOM05D003089 ORTHO05D003544 1.2e-80 303.9 203 72.4
BraA06t23597Z Brassica rapa HOM05D003089 ORTHO05D003544 1.2e-80 303.9 203 72.4
Gorai.012G146100 Gossypium raimondii HOM05D003089 ORTHO05D003544 1.2e-80 303.9 203 71.9
TWI75G1044 Tripterygium wilfordii HOM05D003089 ORTHO05D003544 1.2e-80 303.9 181 79.6
Duzib132G0336 Durio zibethinus HOM05D003089 ORTHO05D003544 1.5e-80 303.5 181 79.0
Cpa.g.sc62.125 Carica papaya HOM05D003089 ORTHO05D003544 2.0e-80 303.1 203 73.9
ECA234G4407 Erigeron canadensis HOM05D003089 ORTHO05D003544 2.6e-80 302.8 193 74.1
Thhalv10011177m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 5.8e-80 301.6 203 71.9
Lj9C368G4 Lonicera japonica HOM05D003089 ORTHO05D003544 5.8e-80 301.6 181 80.7
MBI03_g27663_MAGBIO Magnolia biondii HOM05D003089 ORTHO05D003544 5.8e-80 301.6 186 78.0
MD05G1068200 Malus domestica HOM05D003089 ORTHO05D003544 5.8e-80 301.6 176 81.8
Manes.15G165000 Manihot esculenta HOM05D003089 ORTHO05D003544 5.8e-80 301.6 206 73.3
Thecc.02G123600 Theobroma cacao HOM05D003089 ORTHO05D003544 5.8e-80 301.6 181 79.0
Aa31LG10G4610 Aethionema arabicum HOM05D003089 ORTHO05D003544 7.6e-80 301.2 203 71.9
CARHR039330 Cardamine hirsuta HOM05D003089 ORTHO05D003544 7.6e-80 301.2 203 71.9
Potri.004G152400 Populus trichocarpa HOM05D003089 ORTHO05D003544 7.6e-80 301.2 181 79.0
Gohir.D04G158700 Gossypium hirsutum HOM05D003089 ORTHO05D003544 9.9e-80 300.8 203 71.4
CSS0034967 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 1.3e-79 300.4 180 80.0
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 2.2e-79 299.7 181 79.0
Glyma.04G013900 Glycine max HOM05D003089 ORTHO05D003544 2.9e-79 299.3 203 73.4
Lj1g0018032 Lotus japonicus HOM05D003089 ORTHO05D003544 3.8e-79 298.9 204 73.5
Hund06224 Selenicereus undatus HOM05D003089 ORTHO05D003544 3.8e-79 298.9 205 73.2
Gohir.A04G117000 Gossypium hirsutum HOM05D003089 ORTHO05D003544 4.9e-79 298.5 203 70.9
THA.LOC104804915 Tarenaya hassleriana HOM05D003089 ORTHO05D003544 4.9e-79 298.5 181 77.3
HanXRQChr08g0216591 Helianthus annuus HOM05D003089 ORTHO05D003544 6.4e-79 298.1 181 78.5
Lsat_1_v5_gn_5_118040 Lactuca sativa HOM05D003089 ORTHO05D003544 8.4e-79 297.7 193 73.1
Nitab4.5_0000982g0100 Nicotiana tabacum HOM05D003089 ORTHO05D003544 1.4e-78 297.0 187 77.0
Peaxi162Scf00242g00019 Petunia axillaris HOM05D003089 ORTHO05D003544 1.4e-78 297.0 187 77.0
Glyma.06G013800 Glycine max HOM05D003089 ORTHO05D003544 1.9e-78 296.6 180 79.4
Nn3g17070 Nelumbo nucifera HOM05D003089 ORTHO05D003544 1.9e-78 296.6 186 78.5
HanXRQChr10g0307291 Helianthus annuus HOM05D003089 ORTHO05D003544 3.2e-78 295.8 181 76.2
Phvul.009G009000 Phaseolus vulgaris HOM05D003089 ORTHO05D003544 3.2e-78 295.8 181 78.5
MD10G1078200 Malus domestica HOM05D003089 ORTHO05D003544 4.2e-78 295.4 176 79.5
CiPaw.06G137000 Carya illinoinensis HOM05D003089 ORTHO05D003544 5.4e-78 295.0 181 77.9
RcHm_v2.0_Chr6g0263811 Rosa chinensis HOM05D003089 ORTHO05D003544 7.1e-78 294.7 181 77.3
Sabra04G0101100 Salix brachista HOM05D003089 ORTHO05D003544 7.1e-78 294.7 203 71.9
FvH4_2g08470 Fragaria vesca HOM05D003089 ORTHO05D003544 9.3e-78 294.3 181 77.3
Lsat_1_v5_gn_9_109381 Lactuca sativa HOM05D003089 ORTHO05D003544 9.3e-78 294.3 172 80.2
Sc18g0004600 Simmondsia chinensis HOM05D003089 ORTHO05D003544 9.3e-78 294.3 205 72.2
FAN24G1972 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.6e-77 293.5 181 77.3
FAN24G2674 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.6e-77 293.5 181 77.3
FAN27G3350 Fragaria x ananassa HOM05D003089 ORTHO05D003544 1.6e-77 293.5 181 77.3
Gorai.005G228400 Gossypium raimondii HOM05D003089 ORTHO05D003544 1.6e-77 293.5 181 76.8
CANSAT25G2870 Cannabis sativa HOM05D003089 ORTHO05D003544 2.1e-77 293.1 181 77.9
Duzib052G1069 Durio zibethinus HOM05D003089 ORTHO05D003544 2.1e-77 293.1 190 75.3
Nitab4.5_0002814g0110 Nicotiana tabacum HOM05D003089 ORTHO05D003544 2.1e-77 293.1 199 72.9
AUR62016712 Chenopodium quinoa HOM05D003089 ORTHO05D003544 2.7e-77 292.7 170 81.2
FAN15G0570 Fragaria x ananassa HOM05D003089 ORTHO05D003544 2.7e-77 292.7 181 77.3
Lalb_Chr00c44g0412571 Lupinus albus HOM05D003089 ORTHO05D003544 3.5e-77 292.4 180 79.4
Lalb_Chr08g0246561 Lupinus albus HOM05D003089 ORTHO05D003544 3.5e-77 292.4 180 79.4
Lalb_Chr23g0265471 Lupinus albus HOM05D003089 ORTHO05D003544 3.5e-77 292.4 180 78.3
Potri.009G113700 Populus trichocarpa HOM05D003089 ORTHO05D003544 3.5e-77 292.4 203 71.4
PGR042G2422 Punica granatum HOM05D003089 ORTHO05D003544 6.0e-77 291.6 181 78.5
Gohir.A03G179500 Gossypium hirsutum HOM05D003089 ORTHO05D003544 7.8e-77 291.2 181 76.2
Medtr3g116250 Medicago truncatula HOM05D003089 ORTHO05D003544 1.0e-76 290.8 205 71.7
VMungo1309G0726 Vigna mungo HOM05D003089 ORTHO05D003544 1.3e-76 290.4 181 76.8
EL10Ac9g21746 Beta vulgaris HOM05D003089 ORTHO05D003544 1.7e-76 290.0 204 72.5
Eucgr.G00451 Eucalyptus grandis HOM05D003089 ORTHO05D003544 1.7e-76 290.0 181 74.6
PSO478G0141 Papaver somniferum HOM05D003089 ORTHO05D003544 1.7e-76 290.0 181 78.5
Gohir.D02G202895 Gossypium hirsutum HOM05D003089 ORTHO05D003544 2.3e-76 289.7 181 75.7
TPR.G38232 Trifolium pratense HOM05D003089 ORTHO05D003544 3.0e-76 289.3 205 71.7
Ah.01g019560 Amaranthus hybridus HOM05D003089 ORTHO05D003544 3.9e-76 288.9 181 78.5
CDE04G2374 Ceratophyllum demersum HOM05D003089 ORTHO05D003544 5.1e-76 288.5 205 72.2
MELO3C012545.2 Cucumis melo HOM05D003089 ORTHO05D003544 8.7e-76 287.7 181 74.6
Sabra09G0087300 Salix brachista HOM05D003089 ORTHO05D003544 8.7e-76 287.7 181 76.2
Sed0019364 Sechium edule HOM05D003089 ORTHO05D003544 8.7e-76 287.7 181 75.1
Ca_15379_v3 Cicer arietinum L. HOM05D003089 ORTHO05D003544 1.5e-75 287.0 180 77.2
PSO161G0089 Papaver somniferum HOM05D003089 ORTHO05D003544 1.5e-75 287.0 181 77.9
ClCG02G005170 Citrullus lanatus HOM05D003089 ORTHO05D003544 1.9e-75 286.6 181 75.1
CsaV3_7G023410 Cucumis sativus L. HOM05D003089 ORTHO05D003544 1.9e-75 286.6 181 74.6
Nitab4.5_0005596g0010 Nicotiana tabacum HOM05D003089 ORTHO05D003544 2.5e-75 286.2 187 74.3
Psat5g008280 Pisum sativum HOM05D003089 ORTHO05D003544 5.6e-75 285.0 204 70.6
Aqoxy3G03189 Aquilegia oxysepala HOM05D003089 ORTHO05D003544 2.8e-74 282.7 177 73.4
Hund00286 Selenicereus undatus HOM05D003089 ORTHO05D003544 2.8e-74 282.7 203 70.4
arahy.Tifrunner.gnm1.ann1.U64SVT Arachis hypogaea HOM05D003089 ORTHO05D003544 6.2e-74 281.6 180 75.6
arahy.Tifrunner.gnm1.ann1.AHB8GW Arachis hypogaea HOM05D003089 ORTHO05D003544 8.1e-74 281.2 180 75.6
HPP92_026531 Vanilla planifolia HOM05D003089 ORTHO05D003544 1.2e-72 277.3 168 76.2
ClCG11G004530 Citrullus lanatus HOM05D003089 ORTHO05D003544 2.6e-72 276.2 181 72.4
CsaV3_2G014550 Cucumis sativus L. HOM05D003089 ORTHO05D003544 1.7e-71 273.5 181 71.8
Sed0010503 Sechium edule HOM05D003089 ORTHO05D003544 1.1e-70 270.8 171 73.7
ATR0749G081 Amborella trichopoda HOM05D003089 ORTHO05D003544 1.9e-70 270.0 198 68.2
SHI05424 Sapria himalayana HOM05D003089 ORTHO05D003544 9.3e-70 267.7 201 64.7
Zm00001eb216400 Zea mays HOM05D003089 ORTHO05D003544 9.3e-70 267.7 177 72.3
Aa31LG10G3360 Aethionema arabicum HOM05D003089 ORTHO05D003544 1.2e-69 267.3 167 74.9
HPP92_026558 Vanilla planifolia HOM05D003089 ORTHO05D003544 3.5e-69 265.8 163 74.8
AL4G25950 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 4.3e-67 258.8 204 63.2
CANSAT21G0290 Cannabis sativa HOM05D003089 ORTHO05D003544 5.6e-67 258.5 171 71.3
Carub.0001s3993 Capsella rubella HOM05D003089 ORTHO05D003544 1.3e-66 257.3 208 61.5
Sp1g37760 Schrenkiella parvula HOM05D003089 ORTHO05D003544 3.6e-66 255.8 204 61.8
A06p02740 Brassica napus HOM05D003089 ORTHO05D003544 8.1e-66 254.6 182 67.6
BraA06t23482Z Brassica rapa HOM05D003089 ORTHO05D003544 2.4e-65 253.1 182 67.6
BcaC08g43274 Brassica carinata HOM05D003089 ORTHO05D003544 7.6e-64 248.1 163 71.2
BcaB07g33546 Brassica carinata HOM05D003089 ORTHO05D003544 2.2e-63 246.5 182 64.8
C06p06220 Brassica napus HOM05D003089 ORTHO05D003544 6.4e-63 245.0 164 70.7
BolC6t35733H Brassica oleracea HOM05D003089 ORTHO05D003544 6.4e-63 245.0 164 70.7
vmacro02129 Vaccinium macrocarpon HOM05D003089 ORTHO05D003544 3.9e-60 235.7 159 75.5
AUR62011350 Chenopodium quinoa HOM05D003089 ORTHO05D003544 6.9e-57 224.9 171 66.1
Mapoly0001s0228 Marchantia polymorpha HOM05D003089 ORTHO05D003544 9.0e-57 224.6 173 62.4
Thhalv10012090m.g Eutrema salsugineum HOM05D003089 ORTHO05D003544 3.4e-56 222.6 170 63.5
COL.COLO4_32443 Corchorus olitorius HOM05D003089 ORTHO05D003544 2.2e-55 219.9 169 70.4
Lj5C199G5 Lonicera japonica HOM05D003089 ORTHO05D003544 8.4e-55 218.0 121 81.0
CSS0001432 Camellia sinensis var. sinensis HOM05D003089 ORTHO05D003544 1.9e-54 216.9 114 86.0
Mapoly0001s0451 Marchantia polymorpha HOM05D003089 ORTHO05D003544 1.2e-53 214.2 205 52.7
SMO116G0267 Selaginella moellendorffii HOM05D003089 ORTHO05D003544 1.9e-51 206.8 171 57.9
AagrBONN_evm.TU.Sc2ySwM_344.1888 Anthoceros agrestis HOM05D003089 ORTHO05D003544 2.4e-49 199.9 210 49.5
Pp3c22_1940 Physcomitrium patens HOM05D003089 ORTHO05D003544 1.5e-48 197.2 203 50.7
Pp3c5_19540 Physcomitrium patens HOM05D003089 ORTHO05D003544 3.8e-47 192.6 169 52.7
CBR_g31025 Chara braunii HOM05D003089 ORTHO05D003544 5.0e-47 192.2 207 48.3
MBI16_g11568_MAGBIO Magnolia biondii HOM05D003089 ORTHO05D003544 4.5e-40 169.1 120 67.5
Atru.chr5.2983 Acer truncatum HOM05D003089 ORTHO05D003544 1.9e-38 163.7 91 80.2
Lsat_1_v5_gn_5_127261 Lactuca sativa HOM05D003089 ORTHO05D003544 1.3e-34 151.0 120 59.2
Peaxi162Scf00242g00009 Petunia axillaris HOM05D003089 ORTHO05D003544 1.3e-26 124.4 177 45.2
Lsat_1_v5_gn_8_45721 Lactuca sativa HOM05D003089 ORTHO05D003544 1.8e-25 120.6 81 67.9
Lsat_1_v5_gn_8_66001 Lactuca sativa HOM05D003089 ORTHO05D003544 9.4e-22 108.2 63 74.6
Lsat_1_v5_gn_5_122700 Lactuca sativa HOM05D003089 ORTHO05D003544 8.8e-20 101.7 64 71.9
Atru.chr5.2984 Acer truncatum HOM05D003089 ORTHO05D003544 2.6e-19 100.1 87 58.6


User provided reference genes

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