Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11450 Coffea canephora HOM05D006372 ORTHO05D007484 9.7e-73 276.6 125 100.0
Cc03_g00500 Coffea canephora HOM05D006372 ORTHO05D007484 1.6e-22 109.8 162 41.4
Psat0s1953g0360 Pisum sativum HOM05D006372 ORTHO05D007484 3.3e-20 102.1 162 38.3
Medtr4g122980 Medicago truncatula HOM05D006372 ORTHO05D007484 7.3e-20 100.9 163 37.4
CSS0010218 Camellia sinensis var. sinensis HOM05D006372 ORTHO05D007484 1.6e-19 99.8 162 37.0
Potri.010G149500 Populus trichocarpa HOM05D006372 ORTHO05D007484 1.6e-19 99.8 161 36.0
vmacro15167 Vaccinium macrocarpon HOM05D006372 ORTHO05D007484 1.6e-19 99.8 162 37.0
Lj4g0010917 Lotus japonicus HOM05D006372 ORTHO05D007484 3.6e-19 98.6 162 38.3
Rhsim02G0002000 Rhododendron simsii HOM05D006372 ORTHO05D007484 4.7e-19 98.2 162 37.7
Lj6A694G48 Lonicera japonica HOM05D006372 ORTHO05D007484 6.2e-19 97.8 162 36.4
Dinv15134 Davidia involucrata HOM05D006372 ORTHO05D007484 1.1e-18 97.1 162 37.7
GSVIVG01034947001 Vitis vinifera HOM05D006372 ORTHO05D007484 1.1e-18 97.1 162 37.0
Sc25g0002920 Simmondsia chinensis HOM05D006372 ORTHO05D007484 1.8e-18 96.3 162 37.0
Phvul.003G118100 Phaseolus vulgaris HOM05D006372 ORTHO05D007484 3.1e-18 95.5 162 35.8
Sabra10G0115200 Salix brachista HOM05D006372 ORTHO05D007484 3.1e-18 95.5 162 34.6
Actinidia14247 Actinidia chinensis HOM05D006372 ORTHO05D007484 4.0e-18 95.1 162 37.0
COL.COLO4_34565 Corchorus olitorius HOM05D000058 ORTHO05D007484 4.0e-18 95.1 162 35.8
TPR.G12624 Trifolium pratense HOM05D006372 ORTHO05D007484 4.0e-18 95.1 162 35.2
Ah.13g072970 Amaranthus hybridus HOM05D006372 ORTHO05D007484 5.2e-18 94.7 162 35.8
CANSAT78G1238 Cannabis sativa HOM05D006372 ORTHO05D007484 8.9e-18 94.0 162 35.8
Haze_00842 Corylus avellana HOM05D006372 ORTHO05D007484 1.2e-17 93.6 162 35.8
Cpa.g.sc9.3 Carica papaya HOM05D006372 ORTHO05D007484 1.5e-17 93.2 163 35.0
AUR62016249 Chenopodium quinoa HOM05D006372 ORTHO05D007484 1.5e-17 93.2 162 34.0
arahy.Tifrunner.gnm1.ann1.6G9Z4M Arachis hypogaea HOM05D006372 ORTHO05D007484 2.0e-17 92.8 162 35.2
arahy.Tifrunner.gnm1.ann1.LN40BG Arachis hypogaea HOM05D006372 ORTHO05D007484 2.0e-17 92.8 162 35.8
Duzib212G0762 Durio zibethinus HOM05D006372 ORTHO05D007484 2.0e-17 92.8 162 35.2
Cfa015683 Carpinus fangiana HOM05D006372 ORTHO05D007484 2.6e-17 92.4 162 34.6
Ca_21405_v3 Cicer arietinum L. HOM05D000058 ORTHO05D007484 2.6e-17 92.4 162 35.8
Ca_21420_v3 Cicer arietinum L. HOM05D000058 ORTHO05D007484 2.6e-17 92.4 162 35.8
MD16G1148600 Malus domestica HOM05D006372 ORTHO05D007484 3.4e-17 92.0 163 35.0
VMungo1215G0053 Vigna mungo HOM05D006372 ORTHO05D007484 3.4e-17 92.0 162 35.8
EL10Ac3g05573 Beta vulgaris HOM05D006372 ORTHO05D007484 4.4e-17 91.7 162 34.0
Lalb_Chr13g0298701 Lupinus albus HOM05D006372 ORTHO05D007484 4.4e-17 91.7 162 35.2
Thecc.04G306600 Theobroma cacao HOM05D006372 ORTHO05D007484 4.4e-17 91.7 162 34.6
Ciclev10004507m.g Citrus clementina HOM05D006372 ORTHO05D007484 5.8e-17 91.3 143 35.0
MSTRG.3842 Avicennia marina HOM05D006372 ORTHO05D007484 7.5e-17 90.9 146 38.4
AUR62032774 Chenopodium quinoa HOM05D006372 ORTHO05D007484 7.5e-17 90.9 162 33.3
Prupe.1G112100 Prunus persica HOM05D006372 ORTHO05D007484 9.8e-17 90.5 163 34.4
Manes.15G002700 Manihot esculenta HOM05D006372 ORTHO05D007484 1.3e-16 90.1 162 34.6
TAR365G0751 Trochodendron aralioides HOM05D006372 ORTHO05D007484 1.7e-16 89.7 162 35.2
Nitab4.5_0003135g0010 Nicotiana tabacum HOM05D006372 ORTHO05D007484 2.2e-16 89.4 143 37.8
Glyma.17G037100 Glycine max HOM05D006372 ORTHO05D007484 2.9e-16 89.0 162 34.6
Nn4g25472 Nelumbo nucifera HOM05D006372 ORTHO05D007484 2.9e-16 89.0 162 34.6
Oeu022726.1 Olea europaea HOM05D006372 ORTHO05D007484 2.9e-16 89.0 145 35.9
Atru.BG.93.p Acer truncatum HOM05D006372 ORTHO05D007484 3.7e-16 88.6 162 32.7
ECA246G0411 Erigeron canadensis HOM05D006372 ORTHO05D007484 3.7e-16 88.6 143 35.0
Migut.G00027 Erythranthe guttata HOM05D006372 ORTHO05D007484 3.7e-16 88.6 143 38.5
Glyma.07G236300 Glycine max HOM05D006372 ORTHO05D007484 3.7e-16 88.6 162 34.6
TAR636G1668 Trochodendron aralioides HOM05D006372 ORTHO05D007484 3.7e-16 88.6 162 35.8
Aqoxy5G02714 Aquilegia oxysepala HOM05D006372 ORTHO05D007484 4.9e-16 88.2 162 34.6
DCAR_026975 Daucus carota HOM05D006372 ORTHO05D007484 4.9e-16 88.2 143 35.7
Nitab4.5_0001174g0010 Nicotiana tabacum HOM05D006372 ORTHO05D007484 1.1e-15 87.0 143 37.8
Peaxi162Scf00228g00738 Petunia axillaris HOM05D006372 ORTHO05D007484 1.1e-15 87.0 143 37.1
Gohir.A09G066600 Gossypium hirsutum HOM05D006372 ORTHO05D007484 1.9e-15 86.3 143 34.3
Gohir.D09G066250 Gossypium hirsutum HOM05D006372 ORTHO05D007484 1.9e-15 86.3 143 34.3
Gorai.006G080700 Gossypium raimondii HOM05D006372 ORTHO05D007484 1.9e-15 86.3 143 34.3
MBI18_g27383_MAGBIO Magnolia biondii HOM05D006372 ORTHO05D007484 2.4e-15 85.9 162 34.6
RcHm_v2.0_Chr4g0426131 Rosa chinensis HOM05D006372 ORTHO05D007484 2.4e-15 85.9 143 34.3
TWI53G1558 Tripterygium wilfordii HOM05D006372 ORTHO05D007484 2.4e-15 85.9 163 34.4
CiPaw.01G134100 Carya illinoinensis HOM05D006372 ORTHO05D007484 4.1e-15 85.1 162 33.3
ClCG06G004390 Citrullus lanatus HOM05D006372 ORTHO05D007484 4.1e-15 85.1 162 34.0
PSO724G1134 Papaver somniferum HOM05D006372 ORTHO05D007484 4.1e-15 85.1 162 34.0
Eucgr.H04080 Eucalyptus grandis HOM05D006372 ORTHO05D007484 5.4e-15 84.7 144 35.4
MELO3C021253.2 Cucumis melo HOM05D006372 ORTHO05D007484 7.0e-15 84.3 162 33.3
ECA246G0815 Erigeron canadensis HOM05D006372 ORTHO05D007484 9.2e-15 84.0 143 33.6
PSO729G0137 Papaver somniferum HOM05D006372 ORTHO05D007484 1.2e-14 83.6 162 33.3
Solyc01g058140.3 Solanum lycopersicum HOM05D006372 ORTHO05D007484 1.2e-14 83.6 143 36.4
PGSC0003DMG400015971 Solanum tuberosum HOM05D006372 ORTHO05D007484 1.2e-14 83.6 143 36.4
FAN07G1562 Fragaria x ananassa HOM05D006372 ORTHO05D007484 1.6e-14 83.2 143 33.6
ATR0693G150 Amborella trichopoda HOM05D006372 ORTHO05D007484 2.1e-14 82.8 162 34.0
CsaV3_6G028400 Cucumis sativus L. HOM05D006372 ORTHO05D007484 2.1e-14 82.8 162 32.7
CsaV3_UNG230070 Cucumis sativus L. HOM05D006372 ORTHO05D007484 2.1e-14 82.8 162 32.7
unitig_37.g12416 Utricularia gibba HOM05D005560 ORTHO05D007484 3.5e-14 82.0 143 35.0
HPP92_017258 Vanilla planifolia HOM05D006372 ORTHO05D007484 3.5e-14 82.0 143 33.6
AUR62032771 Chenopodium quinoa HOM05D006372 ORTHO05D007484 6.0e-14 81.3 143 33.6
Aa31LG5G17050 Aethionema arabicum HOM05D006372 ORTHO05D007484 7.8e-14 80.9 143 35.0
Sopen01g023640 Solanum pennellii HOM05D006372 ORTHO05D007484 7.8e-14 80.9 143 35.0
SEGI_36822 Sequoiadendron giganteum HOM05D006372 ORTHO05D007484 1.0e-13 80.5 143 33.6
Sed0028172 Sechium edule HOM05D006372 ORTHO05D007484 1.7e-13 79.7 143 34.3
DCAR_023376 Daucus carota HOM05D006372 ORTHO05D007484 2.3e-13 79.3 81 45.7
BcaNung06663 Brassica carinata HOM05D006372 ORTHO05D007484 3.0e-13 79.0 143 35.0
CAN.G114.2 Capsicum annuum HOM05D006372 ORTHO05D007484 3.0e-13 79.0 143 34.3
CDE11G0356 Ceratophyllum demersum HOM05D006372 ORTHO05D007484 3.0e-13 79.0 162 32.1
Zm00001eb115990 Zea mays HOM05D006372 ORTHO05D007484 3.0e-13 79.0 143 34.3
THA.LOC104818872 Tarenaya hassleriana HOM05D006372 ORTHO05D007484 8.6e-13 77.4 162 32.1
CAN.G4272.1 Capsicum annuum HOM05D006372 ORTHO05D007484 1.9e-12 76.3 143 33.6
BNapus_Darmor_BZH_scaffold_118p00070 Brassica napus HOM05D006372 ORTHO05D007484 2.5e-12 75.9 145 35.9
SalBow8G0335 Salvia bowleyana HOM05D006372 ORTHO05D007484 2.5e-12 75.9 147 33.3
Os11g0683500 Oryza sativa ssp. japonica HOM05D006372 ORTHO05D007484 4.3e-12 75.1 143 32.9
AL3G17540 Arabidopsis lyrata HOM05D006372 ORTHO05D007484 7.3e-12 74.3 145 35.2
CAN.G114.3 Capsicum annuum HOM05D006372 ORTHO05D007484 7.3e-12 74.3 143 33.6
FAN12G2256 Fragaria x ananassa HOM05D006372 ORTHO05D007484 1.6e-11 73.2 164 28.7
BolC1t05608H Brassica oleracea HOM05D006372 ORTHO05D007484 2.1e-11 72.8 145 35.2
Sp3g05460 Schrenkiella parvula HOM05D006372 ORTHO05D007484 3.6e-11 72.0 145 35.2
Hund11997 Selenicereus undatus HOM05D006372 ORTHO05D007484 6.2e-11 71.2 188 28.2
SGA_v2.0_scaffold64G22081 Striga asiatica HOM05D006372 ORTHO05D007484 1.1e-10 70.5 82 43.9
Carub.0003s0597 Capsella rubella HOM05D006372 ORTHO05D007484 2.3e-10 69.3 145 33.8
PGR004G0319 Punica granatum HOM05D006372 ORTHO05D007484 2.3e-10 69.3 162 30.2
A05p41510 Brassica napus HOM05D006372 ORTHO05D007484 3.1e-10 68.9 145 33.1
BolC5t34731H Brassica oleracea HOM05D006372 ORTHO05D007484 3.1e-10 68.9 145 33.1
AT3G06510 Arabidopsis thaliana HOM05D006372 ORTHO05D007484 5.2e-10 68.2 145 33.8
Thhalv10020302m.g Eutrema salsugineum HOM05D006372 ORTHO05D007484 5.2e-10 68.2 145 33.1
BraA05t22872Z Brassica rapa HOM05D006372 ORTHO05D007484 8.9e-10 67.4 145 32.4
Mapoly0094s0053 Marchantia polymorpha HOM05D006372 ORTHO05D007484 1.5e-09 66.6 143 32.9
BraA01t04433Z Brassica rapa HOM05D006372 ORTHO05D007484 5.8e-09 64.7 171 31.6
C05p60710 Brassica napus HOM05D006372 ORTHO05D007484 7.5e-09 64.3 147 32.7
SMO203G0058 Selaginella moellendorffii HOM05D006372 ORTHO05D007484 3.7e-08 62.0 80 40.0
QL06p013150 Quercus lobata HOM05D006372 ORTHO05D007484 1.1e-07 60.5 134 32.1
Lsat_1_v5_gn_6_116201 Lactuca sativa HOM05D006372 ORTHO05D007484 2.1e-06 56.2 49 42.9


User provided reference genes

Program Settings