Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 1.3e-140 503.1 258 100.0
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 3.8e-63 245.7 247 55.1
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 5.5e-62 241.9 247 54.3
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 9.3e-62 241.1 245 54.7
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 5.6e-59 231.9 223 58.7
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 8.1e-58 228.0 257 53.3
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 8.1e-58 228.0 233 57.5
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 8.1e-58 228.0 233 57.5
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 6.9e-57 224.9 207 58.9
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 9.0e-57 224.6 253 52.6
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 1.2e-56 224.2 214 57.9
Cc00_g34780 Coffea canephora HOM05D006898 ORTHO05D008506 2.0e-56 223.4 110 100.0
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 4.5e-56 222.2 189 61.4
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 4.5e-56 222.2 171 67.8
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 3.2e-54 216.1 178 62.9
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 3.2e-54 216.1 175 64.6
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 3.9e-52 209.1 223 54.7
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 1.1e-51 207.6 256 50.4
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 3.3e-51 206.1 170 61.8
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 5.7e-51 205.3 139 74.1
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 3.7e-50 202.6 173 60.7
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 6.3e-50 201.8 172 62.2
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 4.5e-48 195.7 150 68.0
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 1.3e-47 194.1 220 50.5
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 1.7e-47 193.7 183 59.6
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 2.9e-47 193.0 172 59.9
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 3.8e-47 192.6 177 58.2
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 3.8e-47 192.6 286 42.3
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 5.0e-47 192.2 189 55.0
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 1.4e-46 190.7 174 58.0
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 1.9e-46 190.3 173 59.0
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 2.5e-46 189.9 170 60.6
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 3.2e-46 189.5 167 64.1
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 7.2e-46 188.3 251 48.2
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 9.3e-46 188.0 180 60.0
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 9.3e-46 188.0 170 61.8
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 1.2e-45 187.6 153 62.7
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 1.2e-45 187.6 178 61.8
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 3.5e-45 186.0 213 50.2
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 4.6e-45 185.7 168 60.7
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 4.6e-45 185.7 170 57.6
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 1.0e-44 184.5 178 61.8
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 1.3e-44 184.1 139 69.1
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.3e-44 184.1 165 62.4
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 1.8e-44 183.7 209 52.2
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 2.3e-44 183.3 187 51.3
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 3.9e-44 182.6 165 61.8
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 6.7e-44 181.8 197 49.7
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 1.1e-43 181.0 165 61.2
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 1.9e-43 180.3 200 51.0
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 4.3e-43 179.1 202 50.0
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 7.4e-43 178.3 139 65.5
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 7.4e-43 178.3 218 47.2
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 9.7e-43 177.9 171 58.5
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 1.6e-42 177.2 172 54.7
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 2.2e-42 176.8 190 54.2
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 2.2e-42 176.8 171 57.9
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 6.3e-42 175.3 174 55.7
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 6.3e-42 175.3 178 55.6
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 8.2e-42 174.9 174 55.7
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 1.1e-41 174.5 207 52.2
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 1.1e-41 174.5 182 54.4
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 1.4e-41 174.1 174 55.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 3.1e-41 172.9 182 54.4
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 3.1e-41 172.9 177 55.9
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 4.1e-41 172.6 172 55.2
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 5.3e-41 172.2 178 54.5
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 1.2e-40 171.0 169 55.6
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 1.5e-40 170.6 174 53.4
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 3.4e-40 169.5 210 47.6
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 1.3e-39 167.5 181 53.0
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 1.7e-39 167.2 210 48.6
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 3.8e-39 166.0 143 60.1
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 3.8e-39 166.0 240 46.2
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 3.8e-39 166.0 146 60.3
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 5.0e-39 165.6 228 48.7
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 6.5e-39 165.2 144 61.8
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 6.5e-39 165.2 191 51.8
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.1e-38 164.5 141 62.4
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 1.1e-38 164.5 200 48.0
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 2.5e-38 163.3 144 58.3
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 2.5e-38 163.3 146 60.3
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 3.2e-38 162.9 143 60.1
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 3.2e-38 162.9 140 62.1
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 7.2e-38 161.8 144 58.3
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 2.1e-37 160.2 241 43.6
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 2.3e-36 156.8 208 47.6
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 2.0e-35 153.7 200 45.5
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 5.7e-35 152.1 165 49.7
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 7.4e-35 151.8 142 57.0
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 1.3e-34 151.0 129 57.4
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 2.2e-34 150.2 139 60.4
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 2.4e-33 146.7 144 52.8
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 4.1e-33 146.0 140 52.9
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 1.0e-31 141.4 168 48.8
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 1.0e-31 141.4 170 45.9
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 4.4e-27 125.9 159 45.3
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 2.2e-26 123.6 111 57.7
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 2.4e-25 120.2 102 59.8
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 2.0e-24 117.1 138 42.0
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 2.2e-23 113.6 156 45.5
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 1.9e-22 110.5 144 42.4
Hma1.2p1_2279F.1_g318700 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 3.2e-22 109.8 93 63.4
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 1.0e-20 104.8 108 50.9
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 1.0e-15 88.2 248 32.7
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 1.3e-15 87.8 170 35.3
Actinidia29335 Actinidia chinensis HOM05D006898 ORTHO05D008506 8.5e-15 85.1 138 37.0
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 2.4e-09 67.0 126 32.5
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 1.7e-07 60.8 36 77.8


User provided reference genes

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