Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g11030 Coffea canephora HOM05D003504 ORTHO05D004006 1.4e-134 483.0 248 100.0
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 1.1e-96 357.1 234 82.9
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 1.2e-87 327.0 234 73.9
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 6.1e-87 324.7 234 73.5
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.0e-86 323.9 234 74.4
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 2.3e-86 322.8 231 74.0
Nitab4.5_0001070g0090 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.5e-85 320.1 234 72.6
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 1.5e-85 320.1 234 73.5
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 4.4e-85 318.5 234 71.8
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 5.8e-85 318.2 234 72.6
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 5.8e-85 318.2 234 72.6
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 5.8e-85 318.2 234 71.8
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 5.8e-85 318.2 231 72.7
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 5.8e-85 318.2 234 72.6
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 7.5e-85 317.8 234 71.8
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 7.5e-85 317.8 231 72.7
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 7.5e-85 317.8 234 73.9
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 9.8e-85 317.4 234 71.4
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 1.3e-84 317.0 234 72.6
Nitab4.5_0000348g0150 Nicotiana tabacum HOM05D003504 ORTHO05D004006 1.7e-84 316.6 234 72.2
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 2.2e-84 316.2 234 71.8
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 2.2e-84 316.2 233 75.1
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 6.4e-84 314.7 234 71.4
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 6.4e-84 314.7 234 71.4
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 8.3e-84 314.3 234 70.9
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 8.3e-84 314.3 233 71.2
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 8.3e-84 314.3 234 70.9
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 1.1e-83 313.9 234 71.4
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 1.4e-83 313.5 234 70.9
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 1.9e-83 313.2 234 70.9
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 4.1e-83 312.0 237 70.9
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 7.0e-83 311.2 234 71.8
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 9.2e-83 310.8 234 69.7
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 9.2e-83 310.8 234 72.2
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 1.2e-82 310.5 234 70.5
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 1.6e-82 310.1 233 70.4
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 1.6e-82 310.1 234 69.7
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 1.6e-82 310.1 234 70.5
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 2.0e-82 309.7 234 72.6
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 2.0e-82 309.7 233 70.4
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 3.5e-82 308.9 234 71.8
Gohir.A12G174150 Gossypium hirsutum HOM05D003504 ORTHO05D004006 6.0e-82 308.1 234 71.4
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 6.0e-82 308.1 234 71.4
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 6.0e-82 308.1 234 69.2
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 1.0e-81 307.4 234 69.2
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.0e-81 307.4 234 69.2
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.0e-81 307.4 234 69.2
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.3e-81 307.0 234 70.9
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 1.3e-81 307.0 230 70.0
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 1.7e-81 306.6 234 69.2
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 2.3e-81 306.2 231 71.4
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 2.3e-81 306.2 234 70.1
Peaxi162Scf01205g00167 Petunia axillaris HOM05D003504 ORTHO05D004006 2.3e-81 306.2 234 70.9
CSS0025770 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 3.0e-81 305.8 231 70.6
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 3.0e-81 305.8 234 68.8
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 3.0e-81 305.8 234 70.1
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 3.0e-81 305.8 234 71.8
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 3.9e-81 305.4 234 68.4
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 5.0e-81 305.1 234 70.5
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 6.6e-81 304.7 234 70.9
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 8.6e-81 304.3 234 68.8
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 8.6e-81 304.3 233 69.5
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 8.6e-81 304.3 234 69.7
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 2.5e-80 302.8 234 71.4
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 4.3e-80 302.0 231 70.6
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 7.3e-80 301.2 234 68.8
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 1.2e-79 300.4 235 68.5
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.6e-79 300.1 234 67.5
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 1.8e-78 296.6 234 68.8
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 2.3e-78 296.2 234 67.9
vmacro15992 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 3.1e-78 295.8 231 69.3
Nn1g07198 Nelumbo nucifera HOM05D003504 ORTHO05D004006 4.0e-78 295.4 234 68.8
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 2.6e-77 292.7 223 70.4
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 3.4e-77 292.4 231 67.5
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 5.8e-77 291.6 234 67.1
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 5.8e-77 291.6 270 63.0
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 5.8e-77 291.6 231 67.5
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 7.5e-77 291.2 231 67.1
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 7.5e-77 291.2 231 67.1
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 7.5e-77 291.2 231 67.5
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 9.8e-77 290.8 231 67.1
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 1.3e-76 290.4 231 67.1
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 2.2e-76 289.7 231 66.7
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 2.9e-76 289.3 231 67.1
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 2.9e-76 289.3 276 59.4
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 3.7e-76 288.9 231 66.7
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 3.7e-76 288.9 231 66.7
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.1e-75 287.3 231 66.7
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 1.1e-75 287.3 231 66.7
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 1.1e-75 287.3 233 66.1
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 1.4e-75 287.0 231 65.8
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.4e-75 287.0 231 64.9
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 4.1e-75 285.4 235 64.3
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 7.0e-75 284.6 231 64.5
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 3.9e-73 278.9 233 63.9
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 2.5e-72 276.2 234 63.2
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 1.6e-71 273.5 234 63.7
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.1e-70 270.8 262 57.3
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 1.2e-69 267.3 231 63.2
Phvul.009G114325 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 9.2e-67 257.7 203 69.0
Cpa.g.sc34.42 Carica papaya HOM05D003504 ORTHO05D004006 1.2e-66 257.3 234 61.5
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 1.2e-63 247.3 230 57.8
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 2.1e-63 246.5 230 58.7
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 6.4e-60 235.0 230 55.7
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 9.2e-59 231.1 184 69.0
Lj6A705G41 Lonicera japonica HOM05D003504 ORTHO05D004006 4.6e-58 228.8 209 57.9
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.1e-56 224.2 230 54.8
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-56 223.8 254 52.0
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 4.3e-56 222.2 230 54.3
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.1e-55 219.9 230 53.9
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 6.2e-55 218.4 230 53.9
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 6.0e-50 201.8 181 61.3
Ca_24183_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 9.6e-48 194.5 162 65.4
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 5.8e-45 185.3 115 81.7
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 8.4e-44 181.4 115 80.0
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 1.2e-42 177.6 167 61.1
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 1.3e-41 174.1 242 40.1
CAN.G338.64 Capsicum annuum HOM05D003504 ORTHO05D004006 9.7e-24 114.8 140 50.0
CAN.G307.30 Capsicum annuum HOM05D002685 ORTHO05D001487 1.3e-20 104.4 140 47.9
CAN.G151.23 Capsicum annuum HOM05D003504 ORTHO05D004006 1.6e-18 97.4 87 60.9
CAN.G578.10 Capsicum annuum HOM05D003504 ORTHO05D001487 1.3e-15 87.8 79 58.2
QL04p085812 Quercus lobata HOM05D003504 ORTHO05D004006 1.3e-15 87.8 49 85.7
MD05G1233200 Malus domestica HOM05D003504 ORTHO05D004006 2.8e-15 86.7 49 83.7
RcHm_v2.0_Chr5g0024371 Rosa chinensis HOM05D003504 ORTHO05D004006 6.3e-15 85.5 49 81.6
CAN.G83.9 Capsicum annuum HOM05D003504 ORTHO05D004006 3.8e-12 76.3 53 66.0
CAN.G861.1 Capsicum annuum HOM05D003504 ORTHO05D004006 2.1e-10 70.5 79 49.4
TPR.G38062 Trifolium pratense HOM05D003504 ORTHO05D004006 9.7e-08 61.6 64 53.1
TPR.G35990 Trifolium pratense HOM05D003504 ORTHO05D004006 1.7e-07 60.8 64 51.6


User provided reference genes

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