Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 1.8e-69 265.8 132 100.0
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.4e-21 106.7 93 60.2
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 3.2e-18 95.5 94 53.2
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.2e-18 95.5 94 53.2
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.2e-18 95.5 94 53.2
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 5.5e-18 94.7 94 53.2
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.6e-17 93.2 91 51.6
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 2.1e-17 92.8 91 51.6
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 2.1e-17 92.8 88 52.3
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 4.7e-17 91.7 91 56.0
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 4.7e-17 91.7 120 45.0
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 8.0e-17 90.9 94 53.2
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.8e-16 89.7 100 50.0
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.8e-16 89.7 95 51.6
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 2.3e-16 89.4 95 53.7
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 8.8e-16 87.4 94 54.3
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 2.0e-15 86.3 94 45.7
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.0e-15 86.3 91 50.5
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.0e-15 86.3 90 51.1
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.0e-15 86.3 91 47.3
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 2.0e-15 86.3 96 52.1
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 2.6e-15 85.9 96 49.0
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 3.3e-15 85.5 110 46.4
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 3.3e-15 85.5 91 49.5
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 4.4e-15 85.1 88 51.1
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 5.7e-15 84.7 100 51.0
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 9.7e-15 84.0 103 44.7
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 9.7e-15 84.0 91 50.5
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.7e-14 83.2 103 43.7
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 2.8e-14 82.4 106 47.2
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 3.7e-14 82.0 102 44.1
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 3.7e-14 82.0 100 47.0
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 3.7e-14 82.0 114 47.4
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.7e-14 82.0 91 46.2
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 4.8e-14 81.6 99 47.5
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 4.8e-14 81.6 115 46.1
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 6.3e-14 81.3 98 49.0
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 6.3e-14 81.3 117 44.4
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.2e-14 80.9 100 47.0
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.4e-13 80.1 87 47.1
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.8e-13 79.7 91 46.2
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.4e-13 79.3 105 41.9
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 3.1e-13 79.0 95 47.4
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 3.1e-13 79.0 110 46.4
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 3.1e-13 79.0 100 46.0
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 3.1e-13 79.0 88 50.0
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.2e-12 77.0 130 40.0
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.2e-12 77.0 145 37.9
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.0e-12 76.3 103 42.7
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 2.6e-12 75.9 111 43.2
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 2.6e-12 75.9 111 44.1
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 5.9e-12 74.7 111 43.2
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 5.9e-12 74.7 124 40.3
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.0e-11 73.9 105 41.0
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.3e-11 73.6 107 43.0
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 2.2e-11 72.8 109 40.4
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 2.9e-11 72.4 146 36.3
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 6.5e-11 71.2 97 45.4
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.5e-10 70.1 107 41.1
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 9.4e-10 67.4 99 45.5
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.6e-09 66.6 128 38.3
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 8.0e-09 64.3 122 32.8
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 3.0e-08 62.4 91 40.7
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 2.0e-07 59.7 97 37.1
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 2.6e-07 59.3 95 36.8
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.6e-07 59.3 95 36.8
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 4.4e-07 58.5 125 34.4
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 9.7e-07 57.4 92 39.1
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 9.7e-07 57.4 100 39.0
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.2e-06 56.2 91 45.1
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 2.8e-06 55.8 138 33.3
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 4.8e-06 55.1 49 53.1
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 4.8e-06 55.1 149 27.5
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 6.3e-06 54.7 131 32.1


User provided reference genes

Program Settings