Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 1.1e-81 306.6 159 100.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.6e-59 233.0 159 75.5
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 5.9e-59 231.1 155 75.5
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 5.9e-59 231.1 155 75.5
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.1e-56 222.6 155 72.3
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.0e-54 216.1 159 74.2
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.0e-54 216.1 155 72.9
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.6e-54 215.7 159 74.2
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.3e-53 213.4 159 69.8
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.2e-53 212.6 159 69.2
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.9e-53 212.2 159 70.4
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 3.7e-53 211.8 159 69.8
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 4.9e-53 211.5 157 70.7
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 4.9e-53 211.5 159 73.0
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.9e-53 211.5 155 71.0
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.4e-52 209.1 159 72.3
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 3.5e-51 205.3 154 71.4
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.0e-50 203.8 157 68.8
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.3e-50 202.6 155 71.0
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.3e-50 202.6 157 66.9
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.3e-50 202.6 157 66.9
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 3.9e-50 201.8 157 68.8
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.9e-49 199.5 157 66.2
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 2.5e-49 199.1 157 67.5
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 2.5e-49 199.1 155 67.7
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 4.3e-49 198.4 161 65.8
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 5.6e-49 198.0 158 68.4
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.6e-48 196.4 157 66.2
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 2.8e-48 195.7 157 65.6
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 6.2e-48 194.5 157 65.0
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.0e-47 193.7 157 65.0
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 1.8e-47 193.0 157 65.6
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 2.3e-47 192.6 157 64.3
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 4.0e-47 191.8 157 64.3
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.2e-47 191.4 157 65.6
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 6.8e-47 191.0 157 64.3
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 8.9e-47 190.7 157 64.3
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.2e-46 190.3 157 65.0
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 3.4e-46 188.7 156 64.1
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.8e-46 188.0 159 65.4
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 7.5e-46 187.6 157 63.7
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.3e-45 186.8 157 63.1
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.7e-45 186.4 152 64.5
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 1.7e-45 186.4 141 71.6
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.7e-45 186.4 148 66.9
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.7e-45 186.4 157 62.4
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 3.7e-45 185.3 156 64.1
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 3.7e-45 185.3 146 67.1
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 3.7e-45 185.3 157 63.7
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 4.9e-45 184.9 154 63.6
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 6.4e-45 184.5 157 63.1
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 8.3e-45 184.1 152 63.8
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 8.3e-45 184.1 161 64.6
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 8.3e-45 184.1 158 63.3
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 8.3e-45 184.1 156 62.8
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.4e-44 182.6 157 63.1
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 3.2e-44 182.2 161 64.0
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 4.1e-44 181.8 155 65.8
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 5.4e-44 181.4 157 62.4
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 9.2e-44 180.6 155 63.2
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.2e-43 180.3 157 60.5
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.6e-43 179.9 154 66.9
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 2.7e-43 179.1 149 65.8
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.7e-43 179.1 155 60.6
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 3.5e-43 178.7 157 63.7
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 3.5e-43 178.7 157 62.4
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 4.6e-43 178.3 155 65.8
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 6.0e-43 177.9 155 61.9
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 1.3e-42 176.8 156 63.5
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 1.3e-42 176.8 158 62.0
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 3.9e-42 175.3 161 58.4
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 5.0e-42 174.9 143 65.0
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 6.6e-42 174.5 159 59.1
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 6.6e-42 174.5 153 63.4
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 8.6e-42 174.1 157 60.5
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.9e-41 172.9 156 61.5
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.3e-41 172.2 156 60.9
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.3e-41 172.2 156 60.9
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 5.6e-41 171.4 157 59.9
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 9.5e-41 170.6 147 63.9
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.8e-40 169.1 158 60.1
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 6.2e-40 167.9 155 61.9
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 8.1e-40 167.5 155 59.4
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.1e-39 167.2 158 59.5
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 1.4e-39 166.8 148 64.2
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.8e-39 166.4 155 60.6
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 4.0e-39 165.2 153 61.4
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 4.0e-39 165.2 141 61.7
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 5.2e-39 164.9 155 59.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.5e-38 163.3 183 55.2
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 2.0e-38 162.9 143 61.5
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 2.0e-38 162.9 143 61.5
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 4.4e-38 161.8 172 56.4
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 7.5e-38 161.0 155 58.7
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 7.5e-38 161.0 222 46.4
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.3e-37 160.2 158 58.2
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.7e-37 159.8 112 72.3
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.7e-37 159.8 129 67.4
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.2e-37 159.5 155 57.4
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 6.4e-37 157.9 153 56.2
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 6.4e-37 157.9 102 80.4
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-36 157.1 155 56.8
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 1.9e-36 156.4 155 58.7
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.2e-36 155.6 153 56.2
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.1e-36 155.2 155 56.1
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 4.1e-36 155.2 155 58.1
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 5.4e-36 154.8 127 66.1
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 5.4e-36 154.8 160 55.6
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 5.4e-36 154.8 155 56.1
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 5.4e-36 154.8 155 56.1
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 5.4e-36 154.8 155 56.1
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 7.1e-36 154.5 153 54.9
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.2e-35 153.7 155 58.1
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.6e-35 153.3 116 68.1
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 2.7e-35 152.5 150 57.3
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 2.7e-35 152.5 96 80.2
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 3.5e-35 152.1 153 56.9
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 3.5e-35 152.1 153 56.9
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 3.5e-35 152.1 153 56.9
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 3.5e-35 152.1 153 55.6
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 4.6e-35 151.8 130 65.4
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 3.0e-34 149.1 155 56.1
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 6.6e-34 147.9 155 55.5
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 6.6e-34 147.9 202 47.0
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 6.6e-34 147.9 154 59.1
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 6.6e-34 147.9 155 56.1
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 1.1e-33 147.1 155 56.1
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.5e-33 146.7 153 55.6
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 2.5e-33 146.0 155 52.9
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 3.3e-33 145.6 172 54.7
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.6e-33 144.8 158 53.8
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 5.6e-33 144.8 158 51.9
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 5.6e-33 144.8 125 62.4
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 1.2e-32 143.7 148 56.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.8e-31 139.8 155 53.5
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 2.3e-31 139.4 157 52.2
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 6.8e-31 137.9 154 53.9
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.2e-30 137.1 156 52.6
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.5e-30 136.7 143 53.8
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.4e-30 135.2 114 63.2
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 7.6e-30 134.4 143 55.2
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 9.9e-30 134.0 154 51.3
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 9.9e-30 134.0 166 50.0
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.3e-29 133.7 174 46.6
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.7e-29 133.3 102 69.6
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.7e-29 132.1 97 69.1
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 4.9e-29 131.7 184 46.2
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.1e-28 130.6 93 69.9
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.4e-28 130.2 138 54.3
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 9.2e-28 127.5 156 45.5
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.2e-27 127.1 93 66.7
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.6e-27 125.2 92 68.5
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 6.0e-27 124.8 93 67.7
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 6.0e-27 124.8 124 55.6
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 7.8e-27 124.4 176 44.9
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.0e-26 124.0 94 66.0
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.7e-26 123.2 98 66.3
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 2.3e-26 122.9 269 35.7
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 3.9e-26 122.1 166 48.2
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 4.3e-25 118.6 93 69.9
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 5.6e-25 118.2 116 56.0
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.1e-19 99.8 157 43.3
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 3.5e-19 99.0 114 50.9
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.3e-18 97.1 89 64.0
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 7.3e-17 91.3 77 57.1
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 9.6e-17 90.9 89 58.4
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 3.4e-14 82.4 86 54.7
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 9.9e-14 80.9 83 48.2
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 9.9e-14 80.9 60 63.3
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.7e-13 80.1 66 62.1
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.4e-13 77.8 65 56.9
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 8.4e-13 77.8 65 58.5
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.5e-06 57.0 101 44.6
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 2.0e-06 56.6 76 42.1
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 4.5e-06 55.5 41 63.4
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 9.9e-06 54.3 62 45.2


User provided reference genes

Program Settings