Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g05160 Coffea canephora HOM05D006440 ORTHO05D003987 0.0e+00 1294.3 637 100.0
CSS0026181 Camellia sinensis var. sinensis HOM05D006440 ORTHO05D003987 8.2e-277 956.8 614 77.5
QL06p016694 Quercus lobata HOM05D006440 ORTHO05D003987 6.7e-271 937.2 604 75.2
CiPaw.02G114500 Carya illinoinensis HOM05D006440 ORTHO05D003987 5.7e-270 934.1 605 75.7
Ciclev10004596m.g Citrus clementina HOM05D006440 ORTHO05D003987 1.4e-268 929.5 605 74.4
GSVIVG01027730001 Vitis vinifera HOM05D006440 ORTHO05D003987 1.8e-268 929.1 608 74.5
Sopen09g032600 Solanum pennellii HOM05D006440 ORTHO05D003987 3.1e-268 928.3 594 76.1
CAN.G793.7 Capsicum annuum HOM05D006440 ORTHO05D003987 1.5e-267 926.0 596 75.5
Migut.G00449 Erythranthe guttata HOM05D006440 ORTHO05D003987 2.6e-267 925.2 601 74.4
SalBow2G2218 Salvia bowleyana HOM05D006440 ORTHO05D003987 6.5e-266 920.6 623 72.6
MSTRG.9914 Avicennia marina HOM05D006440 ORTHO05D003987 1.1e-265 919.8 595 76.3
Duzib212G0326 Durio zibethinus HOM05D006440 ORTHO05D003987 9.4e-265 916.8 603 73.5
Atru.chr4.2134 Acer truncatum HOM05D006440 ORTHO05D003987 1.2e-264 916.4 606 73.3
SGA_v2.0_scaffold88G27269 Striga asiatica HOM05D006440 ORTHO05D003987 1.2e-264 916.4 590 74.9
Gohir.A09G225400 Gossypium hirsutum HOM05D006440 ORTHO05D003987 5.2e-263 911.0 603 73.3
Rhsim04G0187900 Rhododendron simsii HOM05D006440 ORTHO05D003987 6.7e-263 910.6 638 72.3
HanXRQChr13g0418761 Helianthus annuus HOM05D006440 ORTHO05D003987 1.7e-261 906.0 605 71.9
vmacro08450 Vaccinium macrocarpon HOM05D006440 ORTHO05D003987 3.1e-260 901.7 676 69.1
Gohir.D09G227100 Gossypium hirsutum HOM05D006440 ORTHO05D003987 1.2e-259 899.8 601 72.7
Manes.03G166900 Manihot esculenta HOM05D006440 ORTHO05D003987 3.5e-259 898.3 603 73.1
Potri.008G165000 Populus trichocarpa HOM05D006440 ORTHO05D003987 5.9e-259 897.5 603 73.8
Prupe.1G035000 Prunus persica HOM05D006440 ORTHO05D003987 7.7e-259 897.1 605 72.4
DCAR_027296 Daucus carota HOM05D006440 ORTHO05D003987 1.3e-258 896.3 606 71.6
Potri.010G073600 Populus trichocarpa HOM05D006440 ORTHO05D003987 1.7e-258 896.0 605 73.6
TWI09G0180 Tripterygium wilfordii HOM05D006440 ORTHO05D003987 1.1e-257 893.3 603 72.3
CANSAT78G1511 Cannabis sativa HOM05D006440 ORTHO05D003987 1.9e-257 892.5 602 70.9
Eucgr.H03137 Eucalyptus grandis HOM05D006440 ORTHO05D003987 2.1e-256 889.0 602 72.1
Nn1g02707 Nelumbo nucifera HOM05D006440 ORTHO05D003987 2.1e-256 889.0 613 70.3
Sed0013572 Sechium edule HOM05D006440 ORTHO05D003987 1.8e-255 885.9 598 71.9
MD13G1210600 Malus domestica HOM05D006440 ORTHO05D003987 3.0e-255 885.2 605 71.7
TAR365G0504 Trochodendron aralioides HOM05D006440 ORTHO05D003987 3.0e-255 885.2 603 71.6
Lalb_Chr02g0150571 Lupinus albus HOM05D006440 ORTHO05D003987 4.0e-255 884.8 605 70.7
Ca_09816_v3 Cicer arietinum L. HOM05D006440 ORTHO05D003987 5.2e-255 884.4 604 70.7
CsaV3_3G012320 Cucumis sativus L. HOM05D006440 ORTHO05D003987 5.2e-255 884.4 603 71.6
MELO3C006441.2 Cucumis melo HOM05D006440 ORTHO05D003987 7.5e-254 880.6 603 71.5
Lj5g0005322 Lotus japonicus HOM05D006440 ORTHO05D003987 1.1e-252 876.7 603 70.8
COL.COLO4_15832 Corchorus olitorius HOM05D006440 ORTHO05D003987 9.1e-252 873.6 603 70.6
Medtr1g073920 Medicago truncatula HOM05D006440 ORTHO05D003987 2.2e-250 869.0 605 69.9
arahy.Tifrunner.gnm1.ann1.WJ3SQN Arachis hypogaea HOM05D006440 ORTHO05D003987 1.9e-249 865.9 585 71.5
Dinv29887 Davidia involucrata HOM05D006440 ORTHO05D003188 9.4e-249 863.6 561 76.5
arahy.Tifrunner.gnm1.ann1.A0C0SS Arachis hypogaea HOM05D006440 ORTHO05D003987 1.2e-246 856.7 591 70.4
RcHm_v2.0_Chr4g0391871 Rosa chinensis HOM05D006440 ORTHO05D003987 1.5e-246 856.3 605 69.8
VMungo0720G1034 Vigna mungo HOM05D006440 ORTHO05D003987 2.8e-245 852.0 602 68.8
Lsat_1_v5_gn_3_121341 Lactuca sativa HOM05D006440 ORTHO05D003987 5.4e-244 847.8 595 70.8
FAN17G2886 Fragaria x ananassa HOM05D006440 ORTHO05D003987 5.9e-243 844.3 607 68.7
PGR004G0512 Punica granatum HOM05D006440 ORTHO05D003987 5.9e-243 844.3 602 70.1
Phvul.007G129000 Phaseolus vulgaris HOM05D006440 ORTHO05D003987 7.7e-243 844.0 602 67.9
Solyc09g089660.4 Solanum lycopersicum HOM05D006440 ORTHO05D003987 1.7e-242 842.8 547 75.5
ECA240G3037 Erigeron canadensis HOM05D006440 ORTHO05D003987 6.6e-242 840.9 576 70.7
Glyma.10G188100 Glycine max HOM05D006440 ORTHO05D003987 1.5e-241 839.7 601 67.1
Oeu025570.2 Olea europaea HOM05D006440 ORTHO05D000397 2.5e-241 839.0 539 75.7
FvH4_4g03210 Fragaria vesca HOM05D006440 ORTHO05D003987 5.5e-241 837.8 607 68.5
Sabra10G0034700 Salix brachista HOM05D006440 ORTHO05D003987 2.1e-240 835.9 645 66.7
ClCG05G004420 Citrullus lanatus HOM05D006440 ORTHO05D003987 5.2e-239 831.2 642 65.0
Glyma.20G202700 Glycine max HOM05D006440 ORTHO05D003987 3.4e-238 828.6 604 67.1
PSO017G7287 Papaver somniferum HOM05D006440 ORTHO05D003987 5.4e-236 821.2 596 65.9
PSO063G3815 Papaver somniferum HOM05D006440 ORTHO05D003987 9.2e-236 820.5 596 65.8
Aqoxy2G03617 Aquilegia oxysepala HOM05D006440 ORTHO05D003987 3.5e-235 818.5 602 66.6
EL10Ac3g05914 Beta vulgaris HOM05D006440 ORTHO05D003987 2.9e-234 815.5 603 66.5
Peaxi162Scf00024g01821 Petunia axillaris HOM05D006440 ORTHO05D003987 9.5e-233 810.4 532 75.2
MBI18_g37356_MAGBIO Magnolia biondii HOM05D006440 ORTHO05D003987 1.6e-232 809.7 653 63.2
THA.LOC104815988 Tarenaya hassleriana HOM05D006440 ORTHO05D003987 1.0e-231 807.0 594 64.5
Hund04543 Selenicereus undatus HOM05D006440 ORTHO05D003987 1.4e-231 806.6 602 65.9
Gorai.006G249000 Gossypium raimondii HOM05D006440 ORTHO05D003987 2.3e-231 805.8 557 71.1
FAN12G1575 Fragaria x ananassa HOM05D006440 ORTHO05D003987 8.9e-231 803.9 636 64.8
FAN22G0224 Fragaria x ananassa HOM05D006440 ORTHO05D003987 5.8e-230 801.2 636 64.5
Nitab4.5_0008345g0020 Nicotiana tabacum HOM05D006440 ORTHO05D003987 5.8e-230 801.2 507 77.1
AUR62015479 Chenopodium quinoa HOM05D006440 ORTHO05D003987 9.8e-230 800.4 605 65.8
Psat6g132960 Pisum sativum HOM05D006440 ORTHO05D003987 1.0e-226 790.4 601 65.4
Ah.07g207430 Amaranthus hybridus HOM05D006440 ORTHO05D003987 8.9e-223 777.3 581 65.9
Lj6A660T45 Lonicera japonica HOM05D006440 ORTHO05D003987 4.9e-221 771.5 615 66.7
Sp2g08350 Schrenkiella parvula HOM05D006440 ORTHO05D003987 1.3e-218 763.5 596 61.7
Actinidia04464 Actinidia chinensis HOM05D006440 ORTHO05D003987 1.9e-217 759.6 525 72.4
Sc25g0004030 Simmondsia chinensis HOM05D006440 ORTHO05D003987 1.9e-217 759.6 539 68.3
AUR62002263 Chenopodium quinoa HOM05D006440 ORTHO05D003987 5.6e-217 758.1 685 57.7
Thhalv10003170m.g Eutrema salsugineum HOM05D006440 ORTHO05D003987 9.5e-217 757.3 596 60.7
Os04g0177600 Oryza sativa ssp. japonica HOM05D006440 ORTHO05D003987 1.1e-215 753.8 596 61.9
Aa31LG5G3660 Aethionema arabicum HOM05D006440 ORTHO05D003987 2.3e-215 752.7 594 62.1
unitig_748.g7321 Utricularia gibba HOM05D006440 ORTHO05D003987 8.9e-215 750.7 625 60.6
CDE06G0279 Ceratophyllum demersum HOM05D006440 ORTHO05D003987 2.6e-214 749.2 611 62.8
Manes.15G038500 Manihot esculenta HOM05D006440 ORTHO05D003987 2.9e-213 745.7 586 65.0
Thecc.04G250600 Theobroma cacao HOM05D006440 ORTHO05D003987 3.5e-211 738.8 601 63.1
BcaB07g30569 Brassica carinata HOM05D006440 ORTHO05D003987 7.8e-211 737.6 594 60.6
C02p44000 Brassica napus HOM05D006440 ORTHO05D003987 1.7e-210 736.5 595 60.7
BcaC03g16584 Brassica carinata HOM05D006440 ORTHO05D003987 3.0e-210 735.7 596 60.7
BolC2t10447H Brassica oleracea HOM05D006440 ORTHO05D003987 3.3e-209 732.3 594 60.3
Haze_11338 Corylus avellana HOM05D006440 ORTHO05D003987 3.6e-208 728.8 662 57.9
AL8G16820 Arabidopsis lyrata HOM05D006440 ORTHO05D003987 4.7e-208 728.4 594 61.4
BraA02t07826Z Brassica rapa HOM05D006440 ORTHO05D003987 2.9e-205 719.2 596 59.4
A02p27870 Brassica napus HOM05D006440 ORTHO05D003987 8.4e-205 717.6 595 59.3
AT5G43500 Arabidopsis thaliana HOM05D006440 ORTHO05D003987 1.4e-204 716.8 594 59.9
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.7e-202 709.9 490 70.0
CARHR180120 Cardamine hirsuta HOM05D006440 ORTHO05D003987 4.3e-201 705.3 596 58.2
ATR0680G034 Amborella trichopoda HOM05D006440 ORTHO05D003987 1.5e-198 696.8 578 61.8
Carub.0008s0511 Capsella rubella HOM05D006440 ORTHO05D003987 9.6e-193 677.6 553 59.9
Nitab4.5_0000342g0190 Nicotiana tabacum HOM05D006440 ORTHO05D003987 2.4e-188 662.9 526 64.3
Psat2g067040 Pisum sativum HOM05D006440 ORTHO05D003987 1.3e-149 534.3 379 67.3
HPP92_008424 Vanilla planifolia HOM05D006440 ORTHO05D003987 9.4e-140 501.5 399 62.7
Pp3c3_14850 Physcomitrium patens HOM05D006440 ORTHO05D003987 2.3e-138 496.9 613 46.2
SMO117G0008 Selaginella moellendorffii HOM05D006440 ORTHO05D003987 1.9e-124 450.7 595 42.0
Mapoly0028s0034 Marchantia polymorpha HOM05D006440 ORTHO05D003987 2.1e-123 447.2 459 49.5
PGSC0003DMG400017256 Solanum tuberosum HOM05D006440 ORTHO05D003987 7.0e-111 405.6 243 80.2
MD16G1213700 Malus domestica HOM05D006440 ORTHO05D003987 9.5e-108 395.2 532 44.7
Zm00001eb087470 Zea mays HOM05D006440 ORTHO05D003987 1.5e-84 318.2 291 57.7
Zm00001eb087460 Zea mays HOM05D006440 ORTHO05D003987 2.6e-81 307.4 250 58.0
Cpa.g.sc44.85 Carica papaya HOM05D006440 ORTHO05D003987 1.9e-79 301.2 205 71.2
CBR_g37544 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-68 263.8 621 33.5
HPP92_027995 Vanilla planifolia HOM05D006440 ORTHO05D003987 1.5e-52 211.8 174 58.6
HanXRQChr13g0422471 Helianthus annuus HOM05D006440 ORTHO05D003987 1.8e-50 204.9 164 62.8
HPP92_008423 Vanilla planifolia HOM05D006440 ORTHO05D003987 5.3e-42 176.8 132 66.7
Dinv44661 Davidia involucrata HOM05D006440 ORTHO05D003987 1.5e-36 158.7 149 58.4
SEGI_34555 Sequoiadendron giganteum HOM05D006440 ORTHO05D003987 2.4e-34 151.4 110 62.7
HanXRQChr13g0422461 Helianthus annuus HOM05D006440 ORTHO05D003987 3.5e-33 147.5 81 81.5
Hma1.2p1_1716F.1_g299120 Hydrangea macrophylla HOM05D006440 ORTHO05D003987 9.1e-26 122.9 69 76.8
Cfa026271 Carpinus fangiana HOM05D006440 ORTHO05D003987 2.8e-19 101.3 320 27.8
SHI00689 Sapria himalayana HOM05D006440 ORTHO05D003987 3.8e-16 90.9 52 82.7
SHI00694 Sapria himalayana HOM05D006440 ORTHO05D003987 2.5e-15 88.2 86 57.0
MD16G1213300 Malus domestica HOM05D006440 ORTHO05D003987 3.7e-11 74.3 45 68.9
SHI00693 Sapria himalayana HOM05D006440 ORTHO05D003987 1.6e-09 68.9 61 59.0
SHI00691 Sapria himalayana HOM05D000023 ORTHO05D000014 4.5e-09 67.4 44 70.5
Haze_11337 Corylus avellana HOM05D006440 ORTHO05D003987 1.0e-08 66.2 32 93.8
arahy.Tifrunner.gnm1.ann1.IPBD8F Arachis hypogaea HOM05D002333 ORTHO05D003987 4.3e-07 60.8 61 52.5
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 4.7e-06 57.4 387 22.0


User provided reference genes

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