Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.2e-114 417.2 337 100.0
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 6.6e-76 288.5 344 56.7
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 1.8e-73 280.4 343 53.6
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 3.4e-72 276.2 343 54.2
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 5.8e-72 275.4 195 78.5
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 1.3e-71 274.2 343 53.4
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 1.3e-71 274.2 348 53.2
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 4.9e-71 272.3 350 53.7
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 4.2e-70 269.2 193 79.8
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 4.6e-69 265.8 189 77.8
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 8.7e-68 261.5 345 64.9
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 8.7e-68 261.5 189 77.8
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 8.7e-68 261.5 189 77.8
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.1e-67 261.2 189 77.8
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 1.5e-67 260.8 334 53.6
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 1.5e-67 260.8 343 64.4
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 2.5e-67 260.0 343 59.2
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 4.3e-67 259.2 343 64.1
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 7.4e-67 258.5 189 76.2
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 9.6e-67 258.1 343 51.9
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 2.1e-66 256.9 189 76.7
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 2.1e-66 256.9 193 75.1
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 2.8e-66 256.5 189 75.7
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 3.6e-66 256.1 347 54.5
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 4.8e-66 255.8 189 74.6
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 6.2e-66 255.4 341 52.2
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 3.1e-65 253.1 343 57.1
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 5.3e-65 252.3 396 52.3
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 5.3e-65 252.3 189 73.0
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 6.9e-65 251.9 209 70.3
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 1.5e-64 250.8 190 75.3
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 2.6e-64 250.0 192 74.5
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 3.4e-64 249.6 189 75.1
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 4.5e-64 249.2 189 75.1
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 7.6e-64 248.4 190 76.3
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 9.9e-64 248.1 193 76.2
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 2.2e-63 246.9 192 74.0
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 6.4e-63 245.4 340 50.3
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 1.4e-62 244.2 190 74.7
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.9e-62 243.8 190 73.7
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 4.2e-62 242.7 191 73.8
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 5.5e-62 242.3 190 73.2
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 7.1e-62 241.9 343 53.9
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.0e-60 238.0 343 50.4
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.0e-60 238.0 194 70.6
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 1.8e-60 237.3 340 48.8
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 2.3e-60 236.9 189 72.0
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 2.3e-60 236.9 192 69.3
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 3.0e-60 236.5 189 72.5
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 3.9e-60 236.1 358 48.0
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 6.7e-60 235.3 343 49.3
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 7.4e-59 231.9 191 70.2
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 2.1e-58 230.3 349 55.9
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 2.8e-58 229.9 191 70.2
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 2.8e-58 229.9 191 69.1
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 2.8e-58 229.9 353 49.0
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 3.7e-58 229.6 191 70.2
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 3.7e-58 229.6 190 70.0
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 3.7e-58 229.6 192 68.8
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 4.8e-58 229.2 191 70.2
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 4.8e-58 229.2 191 69.1
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 6.2e-58 228.8 189 67.7
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 6.2e-58 228.8 190 69.5
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 6.2e-58 228.8 191 69.6
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 8.1e-58 228.4 189 68.8
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 8.1e-58 228.4 191 69.6
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.4e-57 227.6 191 70.2
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.4e-57 227.6 353 60.1
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 2.4e-57 226.9 197 66.0
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 3.1e-57 226.5 189 70.4
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 5.3e-57 225.7 348 48.0
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 6.9e-57 225.3 189 69.8
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 2.0e-56 223.8 189 70.4
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 3.4e-56 223.0 191 68.6
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 4.5e-56 222.6 190 67.9
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 1.3e-55 221.1 379 45.9
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 2.9e-55 219.9 189 67.7
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.1e-54 218.0 191 67.5
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 1.4e-54 217.6 195 69.7
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 1.4e-54 217.6 195 69.7
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 3.2e-54 216.5 203 65.0
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 5.5e-54 215.7 191 67.5
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 7.1e-54 215.3 191 65.4
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 1.2e-53 214.5 191 66.5
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 1.2e-53 214.5 191 66.5
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 2.7e-53 213.4 191 66.0
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 3.5e-53 213.0 192 67.2
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 4.6e-53 212.6 191 66.0
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 4.6e-53 212.6 191 66.0
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 6.0e-53 212.2 190 66.8
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 7.9e-53 211.8 191 64.9
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.0e-52 211.5 189 65.1
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 1.8e-52 210.7 190 65.8
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 3.0e-52 209.9 190 66.3
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.1e-51 208.0 141 79.4
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 2.5e-51 206.8 139 81.3
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 4.3e-51 206.1 194 65.5
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 9.6e-51 204.9 189 65.6
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 9.6e-51 204.9 189 65.6
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 2.1e-50 203.8 189 65.6
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 2.1e-50 203.8 364 42.9
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 4.8e-50 202.6 342 46.5
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 5.3e-49 199.1 194 63.4
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.0e-49 198.4 189 62.4
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 1.5e-48 197.6 197 61.9
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 2.6e-48 196.8 345 43.5
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.7e-47 194.1 189 63.0
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.2e-47 193.7 189 62.4
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 5.0e-47 192.6 163 69.3
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 8.4e-47 191.8 190 60.5
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 1.4e-46 191.0 190 63.7
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.4e-46 191.0 189 63.5
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.9e-46 190.7 189 63.5
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 3.5e-45 186.4 137 75.9
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.0e-44 183.3 189 60.8
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 2.5e-43 180.3 198 57.6
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 4.3e-43 179.5 193 57.0
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 6.3e-42 175.6 207 52.7
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 8.2e-42 175.3 200 55.5
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.4e-41 174.5 205 57.1
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 5.9e-40 169.1 190 55.3
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 2.2e-39 167.2 189 55.6
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 5.0e-39 166.0 146 69.9
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 5.0e-39 166.0 189 55.0
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 3.2e-38 163.3 331 43.2
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 7.2e-38 162.2 196 52.0
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 1.8e-36 157.5 195 51.8
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.8e-36 157.5 201 51.7
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 1.1e-35 154.8 129 73.6
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 4.8e-34 149.4 144 60.4
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 6.3e-34 149.1 189 50.8
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.1e-25 121.7 136 52.9
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.4e-20 104.8 145 42.1
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 2.3e-20 104.0 95 64.2
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 9.4e-14 82.0 87 59.8
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.2e-13 81.6 51 78.4
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 3.7e-10 70.1 139 37.4
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 8.3e-10 68.9 60 66.7
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 5.9e-08 62.8 196 32.1
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 6.5e-07 59.3 210 28.1
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 3.2e-06 57.0 61 59.0


User provided reference genes

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