Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 4.4e-256 887.5 462 100.0
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 3.9e-212 741.5 464 83.2
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 1.9e-211 739.2 462 82.5
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 9.7e-211 736.9 479 78.1
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 4.8e-210 734.6 464 81.7
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.4e-209 733.0 464 80.6
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 2.6e-208 728.8 464 80.4
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 2.6e-208 728.8 468 82.5
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 5.9e-208 727.6 464 81.5
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 5.0e-207 724.5 464 81.0
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 1.4e-206 723.0 465 79.1
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 7.2e-206 720.7 465 80.0
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 9.4e-206 720.3 462 78.4
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.0e-204 716.8 468 78.8
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.0e-204 715.3 448 84.6
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 3.9e-204 714.9 462 77.7
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.1e-203 713.4 464 80.2
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 2.0e-203 712.6 467 80.1
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 4.3e-203 711.4 462 80.1
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 7.4e-203 710.7 447 84.3
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 9.7e-203 710.3 468 81.4
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 1.3e-202 709.9 464 78.4
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 1.7e-202 709.5 468 81.6
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 2.2e-202 709.1 469 81.9
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 3.7e-202 708.4 464 78.7
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 3.7e-202 708.4 462 80.1
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 1.1e-201 706.8 465 79.6
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 1.4e-201 706.4 462 77.3
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 2.4e-201 705.7 457 79.0
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 3.1e-201 705.3 464 78.4
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 5.3e-201 704.5 463 77.8
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 5.3e-201 704.5 468 79.1
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 9.1e-201 703.7 469 79.3
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 1.2e-200 703.4 464 76.9
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.5e-200 703.0 463 77.5
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.5e-200 703.0 469 79.7
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 3.4e-200 701.8 462 76.2
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 3.8e-199 698.4 462 79.4
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 8.5e-199 697.2 469 76.5
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 1.4e-198 696.4 464 78.0
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 2.5e-198 695.7 464 76.9
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 5.5e-198 694.5 465 77.8
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 1.2e-197 693.3 464 77.2
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 1.6e-197 693.0 464 77.6
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 4.7e-197 691.4 464 77.2
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 6.1e-197 691.0 489 74.0
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 3.0e-196 688.7 464 78.0
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 3.9e-196 688.3 464 76.3
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 5.1e-196 688.0 464 74.6
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.1e-195 686.8 464 77.4
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 2.6e-195 685.6 464 75.4
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 3.3e-195 685.3 464 74.6
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 5.7e-195 684.5 416 82.9
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 2.8e-194 682.2 465 77.2
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 3.7e-194 681.8 465 77.8
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 6.3e-194 681.0 444 78.6
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 1.1e-193 680.2 464 76.5
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.4e-193 679.9 462 76.2
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 7.0e-193 677.6 420 81.4
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 9.1e-193 677.2 462 75.3
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 2.6e-192 675.6 462 74.7
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 2.6e-192 675.6 464 75.9
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 2.6e-192 675.6 462 74.0
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 5.9e-192 674.5 462 73.6
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 1.0e-191 673.7 463 74.3
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 1.7e-191 672.9 464 75.4
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 2.2e-191 672.5 463 74.1
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 2.9e-191 672.2 462 72.7
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 3.8e-191 671.8 462 74.9
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 5.0e-191 671.4 425 80.0
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 1.9e-190 669.5 464 74.4
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 4.2e-190 668.3 462 72.1
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 5.5e-190 667.9 464 74.1
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 5.5e-190 667.9 468 74.4
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 9.4e-190 667.2 465 75.5
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 9.4e-190 667.2 425 79.5
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 2.7e-189 665.6 510 69.4
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 3.6e-189 665.2 462 73.2
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 3.6e-189 665.2 462 73.2
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 3.6e-189 665.2 462 73.2
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 6.1e-189 664.5 463 75.2
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 8.0e-189 664.1 465 75.1
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 1.8e-188 662.9 462 72.3
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 2.3e-188 662.5 492 70.9
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 3.0e-188 662.1 468 73.9
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 5.2e-188 661.4 467 73.4
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 1.1e-187 660.2 465 74.8
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 1.1e-187 660.2 462 71.9
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 1.7e-186 656.4 463 72.6
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 2.2e-186 656.0 463 72.6
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 8.2e-186 654.1 465 75.5
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 4.1e-185 651.7 462 70.8
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 5.3e-185 651.4 465 72.7
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 3.5e-184 648.7 462 71.0
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 4.5e-184 648.3 466 72.7
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 5.9e-184 647.9 462 70.6
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.5e-182 643.3 463 71.9
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 3.6e-181 638.6 401 76.8
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 6.1e-181 637.9 418 75.8
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.3e-180 636.0 487 69.0
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 9.1e-177 624.0 463 70.8
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 2.7e-176 622.5 450 70.9
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 1.7e-175 619.8 398 75.9
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 1.6e-173 613.2 464 69.6
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 2.6e-171 605.9 456 68.4
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 5.0e-167 591.7 415 74.0
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 2.5e-166 589.3 461 66.8
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 2.8e-165 585.9 453 66.2
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 1.8e-164 583.2 421 67.5
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 4.9e-162 575.1 397 73.3
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 3.7e-146 522.3 318 83.3
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.3e-143 513.1 380 71.3
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 1.2e-136 490.7 399 60.2
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 6.9e-132 474.9 463 55.7
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 1.3e-127 460.7 402 56.2
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 1.1e-118 431.0 461 52.3
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 4.2e-105 386.0 287 65.2
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 7.9e-104 381.7 416 51.9
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.2e-96 357.8 261 73.6
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 1.9e-94 350.5 555 36.6
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.7e-77 294.3 188 76.6
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 1.8e-71 274.2 270 57.8
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 1.2e-62 245.0 256 53.9
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 1.5e-62 244.6 256 53.9
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 6.1e-56 222.6 207 61.8
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 2.4e-44 184.1 145 63.4
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 5.4e-44 183.0 122 82.8
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 2.0e-43 181.0 167 62.9
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 3.5e-43 180.3 148 64.2
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 2.4e-36 157.5 125 65.6
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 3.0e-34 150.6 389 30.8
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 1.8e-23 114.8 60 91.7
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 1.4e-20 105.1 65 93.8
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 3.0e-18 97.4 57 87.7
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 8.1e-16 89.4 59 67.8
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 1.2e-14 85.5 69 69.6


User provided reference genes

Program Settings