Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 2.5e-124 448.7 223 100.0
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 5.9e-105 384.4 224 86.2
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 1.3e-104 383.3 225 85.3
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 2.2e-104 382.5 223 84.8
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 5.0e-104 381.3 210 88.1
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.1e-103 380.2 223 85.7
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 1.1e-103 380.2 223 84.8
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.4e-103 379.8 226 84.1
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 3.2e-103 378.6 210 88.6
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 7.2e-103 377.5 228 82.0
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 9.4e-103 377.1 212 88.2
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 6.1e-102 374.4 218 85.8
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 7.9e-102 374.0 213 85.9
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 7.9e-102 374.0 211 87.7
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 7.9e-102 374.0 225 82.7
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.0e-101 373.6 213 86.9
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.4e-101 373.2 225 82.7
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.4e-101 373.2 223 83.4
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 1.4e-101 373.2 224 82.6
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 5.1e-101 371.3 229 81.2
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 5.1e-101 371.3 226 83.6
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 6.7e-101 370.9 223 82.1
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 8.8e-101 370.5 212 86.8
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 8.8e-101 370.5 227 81.5
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 1.1e-100 370.2 228 81.6
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.1e-100 370.2 209 88.0
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 1.1e-100 370.2 226 81.4
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 1.5e-100 369.8 217 83.9
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.0e-100 369.4 212 86.3
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 2.6e-100 369.0 228 82.9
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.3e-100 368.6 200 89.0
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 4.4e-100 368.2 227 81.5
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 5.7e-100 367.9 226 82.7
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 7.4e-100 367.5 207 87.9
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 9.7e-100 367.1 215 83.7
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.7e-99 366.3 209 84.7
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.2e-99 365.9 207 87.4
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.8e-99 365.5 210 83.8
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.8e-99 365.5 198 88.4
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 2.8e-99 365.5 222 81.5
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.8e-99 365.5 224 80.8
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 3.7e-99 365.2 228 81.1
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 4.8e-99 364.8 221 81.9
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 4.8e-99 364.8 214 83.6
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 4.8e-99 364.8 225 79.1
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 6.3e-99 364.4 228 80.7
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 6.3e-99 364.4 198 88.4
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 8.2e-99 364.0 216 83.8
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.1e-98 363.6 211 84.8
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.4e-98 363.2 211 84.4
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 1.8e-98 362.8 228 79.8
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 2.4e-98 362.5 227 79.7
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 2.4e-98 362.5 228 81.6
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 3.1e-98 362.1 206 85.9
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 3.1e-98 362.1 227 79.7
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 4.1e-98 361.7 206 85.9
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 4.1e-98 361.7 216 82.4
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 5.3e-98 361.3 204 86.3
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 5.3e-98 361.3 221 80.5
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 7.0e-98 360.9 211 84.4
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 7.0e-98 360.9 227 77.5
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 7.0e-98 360.9 223 80.7
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 9.1e-98 360.5 239 75.3
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 9.1e-98 360.5 221 81.0
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 9.1e-98 360.5 224 80.4
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 1.2e-97 360.1 216 81.9
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.2e-97 360.1 217 81.1
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.6e-97 359.8 227 78.9
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.6e-97 359.8 218 80.7
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.0e-97 359.4 227 76.7
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.0e-97 359.4 207 83.1
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 2.0e-97 359.4 226 78.3
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 5.9e-97 357.8 219 81.3
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 7.7e-97 357.5 239 74.5
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.7e-96 356.3 213 82.6
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.7e-96 356.3 207 82.1
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 2.9e-96 355.5 217 81.1
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.9e-96 355.5 210 81.4
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 3.8e-96 355.1 214 80.4
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 3.8e-96 355.1 219 81.3
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 5.0e-96 354.8 224 78.1
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 8.5e-96 354.0 218 79.8
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 8.5e-96 354.0 226 79.2
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 1.5e-95 353.2 217 80.2
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 1.5e-95 353.2 215 80.5
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.5e-95 353.2 223 80.3
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.5e-95 353.2 214 80.8
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.9e-95 352.8 213 80.8
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 1.9e-95 352.8 223 78.5
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.5e-95 352.4 214 80.8
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.2e-95 352.1 212 81.1
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.2e-95 352.1 212 81.1
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 4.2e-95 351.7 217 79.3
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 4.2e-95 351.7 217 79.3
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 9.4e-95 350.5 212 83.5
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-94 350.1 188 88.3
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 1.6e-94 349.7 223 78.9
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 2.1e-94 349.4 198 85.4
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 2.1e-94 349.4 227 78.0
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 4.7e-94 348.2 204 80.9
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.0e-93 347.1 204 80.4
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.8e-93 346.3 198 85.4
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 4.0e-93 345.1 204 80.4
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 6.7e-93 344.4 208 81.2
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.6e-92 342.4 236 71.2
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 9.7e-92 340.5 204 79.9
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 8.2e-91 337.4 240 72.9
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 1.1e-90 337.0 207 78.7
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 2.4e-90 335.9 220 77.3
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 2.0e-89 332.8 208 77.9
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 2.0e-89 332.8 198 81.3
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 6.5e-88 327.8 204 78.9
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.4e-87 323.9 261 65.1
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.7e-86 322.4 220 76.4
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 6.1e-86 321.2 201 79.6
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 1.8e-85 319.7 196 80.1
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 4.4e-84 315.1 205 79.5
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 1.3e-83 313.5 220 73.6
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.4e-82 310.1 166 91.0
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 3.1e-82 308.9 207 74.9
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.1e-79 300.4 230 70.9
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 7.2e-79 297.7 198 74.7
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.6e-78 296.6 215 68.8
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 3.6e-78 295.4 160 88.8
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.0e-77 293.9 166 88.0
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 1.4e-77 293.5 218 67.4
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.8e-77 293.1 206 72.3
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 2.3e-77 292.7 164 86.0
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 4.0e-77 292.0 176 80.7
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 5.7e-76 288.1 166 82.5
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 1.7e-75 286.6 218 70.6
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.8e-74 283.1 176 77.8
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 5.0e-72 275.0 145 93.1
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 7.3e-71 271.2 175 77.7
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-70 270.0 151 87.4
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.6e-70 270.0 199 70.9
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.1e-70 269.6 222 67.6
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 8.0e-70 267.7 148 86.5
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-68 263.8 227 63.4
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.2e-67 259.6 210 67.1
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.4e-66 256.1 159 80.5
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.3e-64 249.6 202 66.8
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.1e-62 243.0 149 80.5
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 4.0e-61 238.8 169 71.6
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 7.5e-60 234.6 208 62.0
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 3.2e-58 229.2 167 72.5
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 9.5e-55 217.6 210 49.0
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 3.6e-54 215.7 132 74.2
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.4e-50 203.8 136 76.5
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 2.7e-49 199.5 127 75.6
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.5e-49 199.1 118 78.8
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 5.8e-44 181.8 328 39.6
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 9.6e-39 164.5 145 57.2
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.4e-37 159.8 188 42.6
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 1.9e-34 150.2 200 40.5
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 9.3e-34 147.9 232 40.5
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.5e-31 139.8 84 83.3
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 1.3e-22 110.9 62 83.9
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 6.2e-22 108.6 62 82.3
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 6.4e-19 98.6 59 83.1
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 8.4e-19 98.2 86 65.1
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.0e-12 77.0 70 54.3
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.5e-10 70.1 40 75.0
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.2e-10 69.3 36 86.1
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 5.5e-10 68.9 40 77.5
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 7.1e-10 68.6 118 37.3
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.6e-09 65.9 55 61.8
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 6.0e-09 65.5 32 93.8
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 3.9e-08 62.8 37 70.3
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 3.3e-07 59.7 42 66.7
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 1.3e-06 57.8 31 83.9
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.1e-06 57.0 34 76.5


User provided reference genes

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