Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 5.7e-26 120.2 61 100.0
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 5.5e-21 103.6 61 82.0
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 7.2e-21 103.2 61 82.0
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 1.6e-20 102.1 61 82.0
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 3.6e-20 100.9 61 80.3
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 3.0e-19 97.8 61 78.7
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 5.1e-19 97.1 61 77.0
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.1e-18 95.9 61 75.4
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.1e-18 95.9 61 75.4
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 3.3e-18 94.4 61 73.8
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 3.3e-18 94.4 61 73.8
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 2.4e-16 88.2 61 75.4
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 4.1e-16 87.4 61 75.4
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 4.1e-16 87.4 61 75.4
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 4.1e-16 87.4 61 75.4
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 5.3e-16 87.0 61 73.8
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 5.3e-16 87.0 61 73.8
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 5.3e-16 87.0 61 73.8
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 1.2e-15 85.9 61 73.8
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.2e-15 85.9 61 73.8
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 1.2e-15 85.9 61 73.8
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 1.5e-15 85.5 59 74.6
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 73.8
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.5e-15 85.5 62 75.8
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.5e-15 85.5 62 75.8
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 68.9
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 1.5e-15 85.5 61 68.9
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 2.0e-15 85.1 61 73.8
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 2.0e-15 85.1 61 68.9
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 2.0e-15 85.1 61 68.9
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 2.0e-15 85.1 61 68.9
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 2.0e-15 85.1 61 68.9
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 2.6e-15 84.7 61 72.1
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 2.6e-15 84.7 61 73.8
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 73.8
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 73.8
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 73.8
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 73.8
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 3.4e-15 84.3 61 72.1
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 4.5e-15 84.0 61 72.1
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 4.5e-15 84.0 61 73.8
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 4.5e-15 84.0 61 73.8
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 5.9e-15 83.6 61 72.1
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 5.9e-15 83.6 61 72.1
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 7.7e-15 83.2 61 68.9
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 7.7e-15 83.2 61 72.1
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 7.7e-15 83.2 61 70.5
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 72.1
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 72.1
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 72.1
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 72.1
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 72.1
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 72.1
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 72.1
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 72.1
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 1.0e-14 82.8 51 74.5
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 70.5
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 1.0e-14 82.8 61 72.1
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 1.0e-14 82.8 62 74.2
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 1.3e-14 82.4 60 71.7
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 1.7e-14 82.0 61 70.5
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 1.7e-14 82.0 61 72.1
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 2.2e-14 81.6 60 70.0
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 2.2e-14 81.6 58 72.4
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 2.9e-14 81.3 61 67.2
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 3.8e-14 80.9 58 72.4
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 3.8e-14 80.9 61 70.5
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 6.5e-14 80.1 58 74.1
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 6.5e-14 80.1 62 72.6
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 8.5e-14 79.7 60 66.7
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 8.5e-14 79.7 58 72.4
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 1.1e-13 79.3 58 70.7
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 1.9e-13 78.6 58 72.4
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 1.9e-13 78.6 58 72.4
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 1.9e-13 78.6 57 75.4
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 2.5e-13 78.2 62 69.4
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 2.5e-13 78.2 48 75.0
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 3.2e-13 77.8 58 72.4
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 3.2e-13 77.8 58 72.4
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 4.2e-13 77.4 61 68.9
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 7.2e-13 76.6 58 67.2
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.6e-12 75.5 47 72.3
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 2.1e-12 75.1 56 67.9
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 2.1e-12 75.1 58 72.4
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 6.1e-12 73.6 56 69.6
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 7.9e-12 73.2 52 76.9
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 1.0e-11 72.8 59 62.7
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 6.7e-11 70.1 61 63.9
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 1.1e-10 69.3 61 60.7
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 1.5e-10 68.9 61 60.7
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 3.3e-10 67.8 61 60.7
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 3.3e-10 67.8 55 65.5
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 5.7e-10 67.0 61 60.7
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 2.8e-09 64.7 57 57.9
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 8.2e-09 63.2 48 64.6
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 8.2e-09 63.2 48 64.6
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.1e-08 62.8 48 66.7
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 1.1e-08 62.8 57 54.4
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 1.4e-08 62.4 53 58.5
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 2.4e-08 61.6 58 60.3
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 2.4e-08 61.6 48 60.4
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 3.1e-08 61.2 57 56.1
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 4.1e-08 60.8 48 64.6
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 1.2e-07 59.3 57 56.1
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 4.5e-07 57.4 51 56.9
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 2.2e-06 55.1 55 52.7
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 2.9e-06 54.7 57 59.6
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 2.9e-06 54.7 55 50.9
SMO196G0139 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 5.0e-06 53.9 56 50.0


User provided reference genes

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