Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g00700 Coffea canephora HOM05D006035 ORTHO05D007155 1.8e-85 319.3 176 100.0
Oeu042670.1 Olea europaea HOM05D006035 ORTHO05D007155 6.8e-48 194.5 177 59.9
CAN.G97.9 Capsicum annuum HOM05D006035 ORTHO05D007155 1.3e-46 190.3 176 56.8
Oeu038775.1 Olea europaea HOM05D006035 ORTHO05D007155 1.7e-46 189.9 176 58.5
Nitab4.5_0000931g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 2.9e-46 189.1 176 56.8
Oeu038777.1 Olea europaea HOM05D006035 ORTHO05D007155 2.9e-46 189.1 176 58.5
SGA_v2.0_scaffold64G22102 Striga asiatica HOM05D006035 ORTHO05D007155 8.3e-46 187.6 177 55.4
Migut.G00072 Erythranthe guttata HOM05D006035 ORTHO05D007155 1.9e-45 186.4 179 59.2
QL06p012626 Quercus lobata HOM05D006035 ORTHO05D007155 5.4e-45 184.9 175 54.3
Cfa015301 Carpinus fangiana HOM05D006035 ORTHO05D007155 7.0e-45 184.5 175 55.4
Rhsim04G0240200 Rhododendron simsii HOM05D006035 ORTHO05D007155 1.6e-44 183.3 178 53.4
DCAR_030462 Daucus carota HOM05D006035 ORTHO05D007155 2.0e-44 183.0 177 55.4
Sopen01g024580 Solanum pennellii HOM05D006035 ORTHO05D007155 2.7e-44 182.6 177 54.2
Haze_01313 Corylus avellana HOM05D006035 ORTHO05D007155 4.6e-44 181.8 175 55.4
Nitab4.5_0000655g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 6.0e-44 181.4 168 56.5
PGSC0003DMG400001204 Solanum tuberosum HOM05D006035 ORTHO05D007155 5.0e-43 178.3 176 52.8
Thecc.04G302600 Theobroma cacao HOM05D006035 ORTHO05D007155 8.6e-43 177.6 176 52.3
Duzib212G0974 Durio zibethinus HOM05D006035 ORTHO05D007155 3.3e-42 175.6 176 50.6
Gohir.A10G173200 Gossypium hirsutum HOM05D006035 ORTHO05D007155 4.3e-42 175.3 178 50.6
Hma1.2p1_0013F.1_g008420 Hydrangea macrophylla HOM05D006035 ORTHO05D007155 7.3e-42 174.5 180 52.8
vmacro08029 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 2.8e-41 172.6 178 52.8
CSS0012943 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 3.6e-41 172.2 180 51.7
Dinv44276 Davidia involucrata HOM05D006035 ORTHO05D007155 3.6e-41 172.2 175 56.0
Sabra10G0113300 Salix brachista HOM05D006035 ORTHO05D007155 3.6e-41 172.2 178 52.8
SalBow8G4845 Salvia bowleyana HOM05D006035 ORTHO05D007155 4.7e-41 171.8 176 54.5
CSS0047932 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.1e-40 170.6 180 51.7
CiPaw.01G137000 Carya illinoinensis HOM05D006035 ORTHO05D007155 1.4e-40 170.2 176 53.4
CSS0043064 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 2.3e-40 169.5 176 56.2
Gohir.D10G179700 Gossypium hirsutum HOM05D006035 ORTHO05D007155 4.0e-40 168.7 177 48.6
Gorai.011G201000 Gossypium raimondii HOM05D006035 ORTHO05D007155 5.2e-40 168.3 177 48.0
Gohir.D09G234900 Gossypium hirsutum HOM05D006035 ORTHO05D007155 8.9e-40 167.5 178 49.4
Gohir.A09G234100 Gossypium hirsutum HOM05D006035 ORTHO05D007155 1.5e-39 166.8 178 49.4
HanXRQChr11g0353881 Helianthus annuus HOM05D006035 ORTHO05D007155 1.5e-39 166.8 179 50.8
Rhsim02G0003100 Rhododendron simsii HOM05D006035 ORTHO05D007155 1.5e-39 166.8 177 53.7
Gorai.006G257800 Gossypium raimondii HOM05D006035 ORTHO05D007155 2.0e-39 166.4 178 49.4
ECA246G4755 Erigeron canadensis HOM05D006035 ORTHO05D007155 3.4e-39 165.6 176 51.7
Potri.010G146900 Populus trichocarpa HOM05D006035 ORTHO05D007155 3.4e-39 165.6 181 51.4
Potri.008G103900 Populus trichocarpa HOM05D006035 ORTHO05D007155 4.4e-39 165.2 181 50.3
COL.COLO4_34598 Corchorus olitorius HOM05D006035 ORTHO05D007155 5.8e-39 164.9 177 50.3
MD13G1151300 Malus domestica HOM05D006035 ORTHO05D007155 7.5e-39 164.5 177 48.0
RcHm_v2.0_Chr4g0425671 Rosa chinensis HOM05D006035 ORTHO05D007155 7.5e-39 164.5 178 50.0
vmacro15178 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 9.9e-39 164.1 177 52.0
Atru.chr4.3040 Acer truncatum HOM05D006035 ORTHO05D007155 2.9e-38 162.5 178 49.4
Ciclev10006076m.g Citrus clementina HOM05D006035 ORTHO05D007155 2.9e-38 162.5 175 51.4
Glyma.17G034900 Glycine max HOM05D006035 ORTHO05D007155 2.9e-38 162.5 175 49.7
MD16G1152300 Malus domestica HOM05D006035 ORTHO05D007155 3.7e-38 162.2 177 48.6
TWI09G1568 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 4.9e-38 161.8 175 49.7
VMungo1215G2980 Vigna mungo HOM05D006035 ORTHO05D007155 4.9e-38 161.8 175 48.6
Aqoxy2G02699 Aquilegia oxysepala HOM05D006035 ORTHO05D007155 6.4e-38 161.4 180 51.7
CARHR182020 Cardamine hirsuta HOM05D006035 ORTHO05D007155 6.4e-38 161.4 172 50.6
Glyma.07G238700 Glycine max HOM05D006035 ORTHO05D007155 6.4e-38 161.4 159 51.6
Lsat_1_v5_gn_1_41620 Lactuca sativa HOM05D006035 ORTHO05D007155 8.3e-38 161.0 176 51.7
Sabra08G0078500 Salix brachista HOM05D006035 ORTHO05D007155 8.3e-38 161.0 181 49.7
Peaxi162Scf00228g00041 Petunia axillaris HOM05D006035 ORTHO05D007155 1.1e-37 160.6 152 57.2
TPR.G25406 Trifolium pratense HOM05D006035 ORTHO05D007155 1.1e-37 160.6 175 47.4
Lsat_1_v5_gn_6_116540 Lactuca sativa HOM05D006035 ORTHO05D007155 1.4e-37 160.2 176 50.0
FvH4_4g19970 Fragaria vesca HOM05D006035 ORTHO05D007155 1.9e-37 159.8 175 48.6
AT5G49480 Arabidopsis thaliana HOM05D006035 ORTHO05D007155 2.4e-37 159.5 172 49.4
BcaC04g23738 Brassica carinata HOM05D006035 ORTHO05D007155 2.4e-37 159.5 174 50.0
C09p05220 Brassica napus HOM05D006035 ORTHO05D007155 2.4e-37 159.5 174 50.0
BolC9t53448H Brassica oleracea HOM05D006035 ORTHO05D007155 3.2e-37 159.1 174 50.0
CSS0034436 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 3.2e-37 159.1 183 49.2
TAR633G1133 Trochodendron aralioides HOM05D006035 ORTHO05D007155 3.2e-37 159.1 175 53.1
A09p04840 Brassica napus HOM05D006035 ORTHO05D007155 4.1e-37 158.7 174 50.0
Duzib151G0686 Durio zibethinus HOM05D006035 ORTHO05D007155 5.4e-37 158.3 176 47.7
Medtr4g122260 Medicago truncatula HOM05D006035 ORTHO05D007155 5.4e-37 158.3 175 47.4
Phvul.005G129600 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 5.4e-37 158.3 175 48.6
Sed0018605 Sechium edule HOM05D006035 ORTHO05D007155 7.1e-37 157.9 177 48.0
AL8G23240 Arabidopsis lyrata HOM05D006035 ORTHO05D007155 9.2e-37 157.5 172 49.4
Psat0s4013g0040 Pisum sativum HOM05D006035 ORTHO05D007155 9.2e-37 157.5 174 49.4
PGR004G1138 Punica granatum HOM05D006035 ORTHO05D007155 9.2e-37 157.5 174 51.1
BraA09t36121Z Brassica rapa HOM05D006035 ORTHO05D007155 1.2e-36 157.1 174 50.0
PSO761G0247 Papaver somniferum HOM05D006035 ORTHO05D007155 1.2e-36 157.1 176 50.0
Solyc01g058720.4 Solanum lycopersicum HOM05D006035 ORTHO05D007155 1.2e-36 157.1 157 52.2
ClCG05G006630 Citrullus lanatus HOM05D006035 ORTHO05D007155 1.6e-36 156.8 176 48.3
Lsat_1_v5_gn_6_116560 Lactuca sativa HOM05D006035 ORTHO05D007155 1.6e-36 156.8 176 49.4
Phvul.003G115800 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 1.6e-36 156.8 175 48.0
CANSAT78G2193 Cannabis sativa HOM05D006035 ORTHO05D007155 4.6e-36 155.2 178 47.8
Aa31LG11G8120 Aethionema arabicum HOM05D006035 ORTHO05D007155 6.0e-36 154.8 172 48.3
HanXRQChr05g0146001 Helianthus annuus HOM05D006035 ORTHO05D007155 6.0e-36 154.8 176 51.1
CsaV3_3G015240 Cucumis sativus L. HOM05D006035 ORTHO05D007155 1.0e-35 154.1 176 47.2
Sp2g19800 Schrenkiella parvula HOM05D006035 ORTHO05D007155 1.3e-35 153.7 178 48.3
SpUn0021_0050 Schrenkiella parvula HOM05D006035 ORTHO05D007155 1.3e-35 153.7 178 48.3
Lalb_Chr13g0298531 Lupinus albus HOM05D006035 ORTHO05D007155 1.7e-35 153.3 178 47.2
THA.LOC104818878 Tarenaya hassleriana HOM05D006035 ORTHO05D007155 1.7e-35 153.3 174 50.6
MELO3C006721.2 Cucumis melo HOM05D006035 ORTHO05D007155 2.3e-35 152.9 176 47.7
Ca_21435_v3 Cicer arietinum L. HOM05D006035 ORTHO05D007155 3.0e-35 152.5 178 47.2
BcaB04g19614 Brassica carinata HOM05D006035 ORTHO05D007155 3.9e-35 152.1 174 47.7
Nn3g21749 Nelumbo nucifera HOM05D006035 ORTHO05D007155 3.9e-35 152.1 179 48.0
Lj1g0017970 Lotus japonicus HOM05D006035 ORTHO05D007155 5.1e-35 151.8 180 46.7
PSO210G7669 Papaver somniferum HOM05D006035 ORTHO05D007155 5.1e-35 151.8 176 49.4
Lalb_Chr07g0182041 Lupinus albus HOM05D006035 ORTHO05D007155 6.6e-35 151.4 177 47.5
Eucgr.H04056 Eucalyptus grandis HOM05D006035 ORTHO05D007155 2.5e-34 149.4 194 50.5
TWI53G1140 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 7.3e-34 147.9 175 49.1
Ah.13g071330 Amaranthus hybridus HOM05D006035 ORTHO05D007155 2.1e-33 146.4 185 44.9
AUR62039264 Chenopodium quinoa HOM05D006035 ORTHO05D007155 3.6e-33 145.6 175 45.7
Manes.03G205900 Manihot esculenta HOM05D006035 ORTHO05D007155 4.7e-33 145.2 145 49.7
Actinidia31554 Actinidia chinensis HOM05D006035 ORTHO05D007155 8.1e-33 144.4 180 46.1
Duzib052G0321 Durio zibethinus HOM05D006035 ORTHO05D007155 1.8e-32 143.3 177 44.1
EL10Ac3g05523 Beta vulgaris HOM05D006035 ORTHO05D007155 4.0e-32 142.1 177 45.8
PGR031G3428 Punica granatum HOM05D006035 ORTHO05D007155 3.8e-30 135.6 176 43.2
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 6.4e-30 134.8 158 47.5
unitig_32.g11850 Utricularia gibba HOM05D006035 ORTHO05D007155 8.4e-30 134.4 176 45.5
HPP92_008930 Vanilla planifolia HOM05D006035 ORTHO05D007155 2.4e-29 132.9 175 44.0
Sc19g0003080 Simmondsia chinensis HOM05D006035 ORTHO05D007155 3.2e-29 132.5 175 41.7
MSTRG.10157 Avicennia marina HOM05D006035 ORTHO05D007155 6.0e-28 128.3 176 54.0
Lj6P692T31 Lonicera japonica HOM05D006035 ORTHO05D007155 7.8e-28 127.9 115 58.3
ATR0693G356 Amborella trichopoda HOM05D006035 ORTHO05D007155 2.3e-27 126.3 177 43.5
FAN07G1803 Fragaria x ananassa HOM05D006035 ORTHO05D007155 6.2e-25 118.2 179 49.2
Oeu038773.1 Olea europaea HOM05D006035 ORTHO05D007155 6.9e-24 114.8 212 36.3
CDE08G1648 Ceratophyllum demersum HOM05D006035 ORTHO05D007155 5.8e-23 111.7 139 45.3
MD04G1036600 Malus domestica HOM05D006035 ORTHO05D007155 4.2e-21 105.5 114 46.5
Zm00001eb395970 Zea mays HOM05D006035 ORTHO05D007155 3.0e-19 99.4 175 40.0
Manes.15G000900 Manihot esculenta HOM05D006035 ORTHO05D007155 6.6e-19 98.2 175 46.3
CSS0018156 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.1e-18 97.4 175 45.7
Oeu038774.1 Olea europaea HOM05D006035 ORTHO05D007155 2.1e-17 93.2 176 35.2
HPP92_005426 Vanilla planifolia HOM05D006035 ORTHO05D007155 3.6e-17 92.4 140 40.0
Cpa.g.sc9.45 Carica papaya HOM05D006035 ORTHO05D007155 2.6e-15 86.3 171 43.9
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 4.5e-15 85.5 66 57.6
SEGI_08802 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 7.6e-15 84.7 173 34.1
SEGI_01581 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 1.9e-13 80.1 160 33.8
SEGI_03909 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 4.2e-13 79.0 163 31.3
Os03g0310800 Oryza sativa ssp. japonica HOM05D006035 ORTHO05D007155 5.4e-13 78.6 86 48.8
Ciclev10006337m.g Citrus clementina HOM05D006035 ORTHO05D007155 3.0e-11 72.8 51 60.8
Prupe.1G115600 Prunus persica HOM05D006035 ORTHO05D007155 2.5e-10 69.7 164 40.2
Carub.0008s0934 Capsella rubella HOM05D006035 ORTHO05D007155 4.3e-10 68.9 177 38.4
QL06p006093 Quercus lobata HOM05D001729 ORTHO05D001155 1.6e-09 67.0 53 56.6
TAR362G0119 Trochodendron aralioides HOM05D006035 ORTHO05D007155 4.8e-09 65.5 175 39.4
CBR_g28477 Chara braunii HOM05D000227 ORTHO05D000451 4.0e-08 62.4 160 26.9
CBR_g28479 Chara braunii HOM05D000227 ORTHO05D007155 1.2e-07 60.8 160 26.9
MBI19_g26577_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 1.5e-07 60.5 157 26.8
Pp3c25_1480 Physcomitrium patens HOM05D000227 ORTHO05D007155 3.4e-07 59.3 144 27.1
SGA_v2.0_scaffold20G09168 Striga asiatica HOM05D006035 ORTHO05D007155 5.8e-07 58.5 89 37.1
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 5.8e-07 58.5 155 27.1
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 5.8e-07 58.5 155 27.1
Aa31LG6G13960 Aethionema arabicum HOM05D000227 ORTHO05D004725 7.6e-07 58.2 161 22.4
Duzib093G1739 Durio zibethinus HOM05D000135 ORTHO05D004276 9.9e-07 57.8 77 39.0
Gohir.A01G193500 Gossypium hirsutum HOM05D000135 ORTHO05D004276 3.8e-06 55.8 65 43.1
CDE04G2253 Ceratophyllum demersum HOM05D002198 ORTHO05D002409 4.9e-06 55.5 137 29.9
Gohir.D01G183860 Gossypium hirsutum HOM05D000135 ORTHO05D004276 4.9e-06 55.5 65 43.1
Gorai.002G227200 Gossypium raimondii HOM05D000135 ORTHO05D004276 4.9e-06 55.5 65 43.1
Glyma.02G143800 Glycine max HOM05D000227 ORTHO05D000451 6.4e-06 55.1 155 29.0
COL.COLO4_32718 Corchorus olitorius HOM05D000135 ORTHO05D004276 8.4e-06 54.7 75 37.3
Oeu010587.1 Olea europaea HOM05D001586 ORTHO05D001543 8.4e-06 54.7 157 24.2


User provided reference genes

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