Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 1.3e-213 746.1 366 100.0
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.8e-188 662.5 370 87.3
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 4.1e-188 661.4 370 87.3
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 4.1e-188 661.4 372 87.6
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 5.3e-188 661.0 369 86.2
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.5e-187 657.9 369 87.0
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 1.9e-185 652.5 370 85.7
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.9e-185 652.5 373 84.5
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 4.2e-185 651.4 372 87.1
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 5.5e-185 651.0 373 84.5
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 9.4e-185 650.2 373 84.2
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 1.2e-184 649.8 370 85.9
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 1.6e-184 649.4 370 86.5
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 2.1e-184 649.0 370 86.5
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 2.7e-184 648.7 370 85.1
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 3.6e-184 648.3 370 84.9
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.0e-183 646.7 366 84.2
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.8e-183 646.0 384 83.3
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 2.3e-183 645.6 371 84.4
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 3.0e-183 645.2 370 84.9
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.2e-183 644.4 370 85.4
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 6.8e-183 644.0 370 84.9
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 6.8e-183 644.0 371 85.7
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.2e-182 643.3 370 84.9
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.0e-182 642.5 370 84.9
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 4.4e-182 641.3 374 84.5
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 1.3e-181 639.8 371 85.2
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 8.3e-181 637.1 373 83.9
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.1e-180 635.2 365 84.9
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 7.0e-180 634.0 370 84.1
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 9.1e-180 633.6 370 83.5
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 9.1e-180 633.6 370 84.1
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 9.1e-180 633.6 370 84.1
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 9.1e-180 633.6 370 84.1
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 9.1e-180 633.6 370 84.1
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 2.7e-179 632.1 370 83.8
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 4.5e-179 631.3 371 83.8
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.3e-178 629.8 371 83.6
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.7e-178 629.4 370 83.8
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 3.8e-178 628.2 370 82.7
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 3.8e-178 628.2 366 82.5
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 3.8e-178 628.2 370 82.7
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 3.8e-178 628.2 370 83.5
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 5.0e-178 627.9 370 82.2
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 5.0e-178 627.9 369 81.8
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 6.5e-178 627.5 370 84.3
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 8.5e-178 627.1 386 81.3
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 1.1e-177 626.7 370 83.5
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 1.5e-177 626.3 371 82.5
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 1.5e-177 626.3 370 82.4
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.9e-177 625.9 367 83.7
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 2.5e-177 625.5 371 83.0
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 3.2e-177 625.2 370 83.5
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 3.2e-177 625.2 370 83.0
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 5.5e-177 624.4 371 82.5
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.2e-176 623.2 370 81.6
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 1.6e-176 622.9 365 83.3
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.6e-176 622.9 370 83.2
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 2.1e-176 622.5 409 76.3
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.1e-176 622.5 370 83.5
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.7e-176 622.1 370 82.4
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.7e-176 622.1 370 82.4
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 2.7e-176 622.1 370 82.4
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 2.7e-176 622.1 397 78.3
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 4.7e-176 621.3 371 82.2
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 6.1e-176 620.9 370 81.9
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.0e-175 620.2 371 82.5
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.8e-175 619.4 371 82.5
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.3e-175 619.0 351 86.3
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 4.0e-175 618.2 370 81.9
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 5.2e-175 617.8 371 81.1
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 6.8e-175 617.5 366 83.6
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 8.8e-175 617.1 377 81.7
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 2.0e-174 615.9 370 80.8
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 2.6e-174 615.5 356 84.3
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 3.4e-174 615.1 364 81.6
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 4.4e-174 614.8 370 81.4
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 4.4e-174 614.8 371 81.1
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 4.4e-174 614.8 371 81.1
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 9.8e-174 613.6 364 82.4
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 9.8e-174 613.6 371 80.3
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 2.2e-173 612.5 371 81.7
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 2.2e-173 612.5 369 82.1
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 2.8e-173 612.1 371 81.7
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 3.7e-173 611.7 370 81.9
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 8.3e-173 610.5 371 81.4
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 1.1e-172 610.1 369 81.0
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 1.4e-172 609.8 371 80.9
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 1.4e-172 609.8 370 80.8
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 1.4e-172 609.8 364 83.5
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 2.4e-172 609.0 366 80.1
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 5.4e-172 607.8 370 80.5
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 7.0e-172 607.4 433 72.1
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 2.7e-171 605.5 359 82.2
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 3.5e-171 605.1 356 83.1
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 3.5e-171 605.1 364 80.5
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 4.5e-171 604.7 364 81.3
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 5.9e-171 604.4 361 82.5
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 1.0e-170 603.6 371 80.1
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 1.0e-170 603.6 370 78.4
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 1.7e-170 602.8 371 80.1
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.7e-170 602.8 371 80.3
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 6.6e-170 600.9 370 81.9
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 6.6e-170 600.9 370 80.5
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.1e-168 595.9 372 81.2
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 3.6e-168 595.1 368 80.7
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 8.0e-168 594.0 402 75.1
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 8.0e-168 594.0 347 83.3
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.8e-167 592.8 358 82.1
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 3.0e-167 592.0 360 79.4
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 8.9e-167 590.5 370 77.8
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 4.4e-166 588.2 368 76.6
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 5.7e-166 587.8 368 76.9
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 7.5e-166 587.4 360 78.6
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 7.5e-166 587.4 360 78.6
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 7.5e-166 587.4 360 78.6
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 7.5e-166 587.4 360 78.6
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 7.5e-166 587.4 360 78.6
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 1.4e-164 583.2 369 78.0
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 5.4e-164 581.3 350 82.6
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 7.0e-164 580.9 371 78.2
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 3.5e-163 578.6 371 77.1
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 4.6e-163 578.2 369 77.2
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 7.8e-163 577.4 371 77.1
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 3.9e-162 575.1 347 81.0
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 5.0e-162 574.7 372 77.7
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 6.2e-160 567.8 351 78.9
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 6.2e-160 567.8 373 77.2
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 3.1e-159 565.5 358 77.7
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 3.1e-159 565.5 365 76.7
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 8.9e-159 563.9 364 76.9
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 9.8e-158 560.5 364 76.6
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 2.2e-157 559.3 369 76.2
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 4.1e-156 555.1 364 75.5
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 5.4e-156 554.7 368 74.2
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 3.5e-155 552.0 362 76.0
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 4.6e-147 525.0 284 88.4
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.0e-146 523.9 371 69.3
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 2.3e-146 522.7 370 67.3
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 1.9e-145 519.6 361 70.1
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 7.3e-145 517.7 372 68.0
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 1.6e-144 516.5 370 67.8
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 2.1e-144 516.2 370 67.6
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 4.0e-143 511.9 397 69.3
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 3.0e-138 495.7 370 65.1
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 8.6e-138 494.2 355 68.7
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 1.1e-137 493.8 371 65.0
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 9.6e-137 490.7 283 84.1
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 6.2e-136 488.0 325 73.8
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.8e-135 486.5 355 68.7
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 8.9e-135 484.2 277 83.8
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 1.7e-133 479.9 276 85.5
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.7e-133 479.9 346 72.0
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 2.2e-133 479.6 324 74.1
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.7e-130 469.9 367 62.9
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 8.1e-128 461.1 277 81.9
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 7.6e-126 454.5 278 80.9
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 1.7e-125 453.4 277 80.1
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 2.5e-121 439.5 239 89.1
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 2.2e-117 426.4 387 56.3
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 7.9e-115 417.9 275 76.4
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.0e-114 417.5 366 55.2
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 5.1e-114 415.2 271 75.3
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 2.4e-111 406.4 276 71.0
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 3.4e-110 402.5 402 51.7
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.9e-108 396.7 370 53.5
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 4.6e-99 365.5 273 69.6
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 3.2e-92 342.8 218 77.1
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 4.6e-91 339.0 195 82.1
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.0e-85 321.2 198 79.8
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 1.1e-81 307.8 177 84.2
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 6.1e-67 258.8 171 76.0
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 2.0e-62 243.8 262 55.7
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 1.3e-45 188.0 363 32.0
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 8.6e-45 185.3 213 50.2
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 2.5e-44 183.7 442 29.4
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 7.3e-44 182.2 120 72.5
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 1.8e-42 177.6 120 70.8
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 8.3e-40 168.7 113 77.0
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 7.0e-39 165.6 388 26.8
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.0e-37 161.8 115 67.0
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 1.2e-30 138.3 299 29.8
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 7.6e-25 119.0 84 69.0
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 1.4e-07 61.6 198 29.3
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 1.4e-07 61.6 46 69.6


User provided reference genes

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