Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 1.5e-308 1062.0 527 100.0
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 8.6e-248 860.1 527 81.6
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 8.6e-248 860.1 526 81.2
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.8e-245 852.4 533 81.1
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 6.8e-245 850.5 512 82.2
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 8.9e-245 850.1 522 81.2
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.7e-243 845.9 523 80.5
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 4.2e-242 841.3 519 80.7
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.2e-241 839.7 511 81.8
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 4.6e-241 837.8 510 81.4
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.7e-240 835.9 520 80.6
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 3.0e-240 835.1 530 79.6
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.9e-239 832.4 520 79.8
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.8e-238 828.6 510 82.5
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.8e-238 828.6 526 79.1
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.8e-237 825.9 511 79.8
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.6e-236 822.0 521 79.1
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 3.2e-234 815.1 501 80.8
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.3e-232 809.7 512 78.7
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 1.1e-231 806.6 513 80.3
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.3e-231 805.1 511 78.9
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 5.6e-231 804.3 542 74.7
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.4e-229 799.7 511 79.6
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.4e-229 799.7 513 78.6
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 1.8e-229 799.3 513 78.8
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 4.0e-229 798.1 514 79.0
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 6.9e-229 797.3 528 77.8
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 2.6e-228 795.4 512 78.1
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 5.8e-228 794.3 513 79.1
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 9.9e-228 793.5 513 78.9
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 9.9e-228 793.5 512 77.9
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.2e-227 792.3 513 78.9
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.9e-227 792.0 513 78.8
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.8e-227 791.6 513 78.6
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.9e-227 791.2 513 78.8
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.4e-226 789.6 521 77.4
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.2e-226 788.5 513 78.6
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 3.5e-225 785.0 521 77.0
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.5e-223 778.9 521 76.4
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.5e-223 778.9 507 76.7
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 3.3e-223 778.5 511 77.3
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 3.7e-222 775.0 512 75.8
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 4.8e-222 774.6 520 76.5
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 8.1e-222 773.9 511 76.7
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 1.8e-221 772.7 510 76.1
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.2e-220 770.0 507 75.7
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 2.0e-220 769.2 514 76.1
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 2.0e-220 769.2 518 76.1
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 9.9e-220 766.9 514 76.3
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.3e-219 766.5 515 76.1
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.7e-219 766.1 589 68.4
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 2.2e-219 765.8 513 74.5
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 2.9e-219 765.4 513 76.0
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.4e-218 763.1 508 76.6
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.9e-218 762.7 508 75.6
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 3.2e-218 761.9 514 74.9
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 9.3e-218 760.4 536 74.1
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.7e-217 758.8 515 75.0
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 4.6e-217 758.1 512 74.6
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 2.3e-216 755.7 518 76.3
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 6.7e-216 754.2 525 74.9
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 3.3e-215 751.9 490 77.3
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 2.1e-214 749.2 515 74.4
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 9.0e-213 743.8 510 73.7
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.2e-212 743.4 526 73.0
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.4e-212 741.9 508 74.4
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 3.4e-212 741.9 515 74.2
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.6e-212 740.7 513 74.9
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 2.2e-211 739.2 510 73.1
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 2.2e-211 739.2 492 75.8
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.2e-211 739.2 478 76.4
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 2.9e-211 738.8 506 73.7
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.4e-210 736.5 512 73.0
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.9e-210 736.1 510 72.9
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 4.2e-210 734.9 463 80.6
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.1e-209 732.6 488 75.0
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 3.0e-208 728.8 550 69.5
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.5e-207 726.5 467 79.0
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 2.4e-205 719.2 511 72.6
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 1.7e-203 713.0 520 71.3
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.9e-202 709.5 504 73.2
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.9e-202 709.5 504 73.2
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 4.2e-202 708.4 506 71.5
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 2.1e-201 706.1 521 71.8
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.1e-199 700.3 524 70.4
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.0e-199 699.5 513 69.6
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 6.9e-197 691.0 440 80.2
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.4e-194 683.3 509 68.4
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.4e-194 683.3 503 70.6
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.0e-192 675.6 527 68.1
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.7e-190 669.8 469 74.2
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.8e-190 669.1 469 74.2
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 4.5e-188 661.8 526 66.5
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.2e-185 653.7 511 68.1
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 6.3e-182 641.3 521 65.1
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.2e-182 641.0 426 77.7
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 7.0e-181 637.9 469 71.2
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 4.2e-178 628.6 537 63.7
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.2e-176 621.7 487 64.5
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 9.7e-175 617.5 482 65.8
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 2.2e-174 616.3 498 65.5
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.6e-172 610.1 370 83.5
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.7e-171 606.7 440 71.4
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 4.2e-170 602.1 370 82.4
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.5e-167 593.6 503 63.4
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 4.4e-167 592.0 557 56.4
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.3e-160 569.7 368 78.5
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.3e-160 569.7 393 73.8
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 7.5e-159 564.7 461 65.1
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.8e-158 562.8 476 62.4
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 5.4e-157 558.5 334 82.6
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 3.3e-154 549.3 391 73.1
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 2.8e-153 546.2 504 58.1
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 3.4e-151 539.3 506 57.7
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 3.5e-148 529.3 369 75.3
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 3.5e-148 529.3 513 55.2
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.3e-146 522.3 509 55.6
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 6.0e-140 501.9 495 54.5
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.6e-135 486.5 288 81.2
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 9.2e-133 478.0 426 61.5
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 3.6e-129 466.1 498 51.4
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.5e-127 460.7 365 68.5
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 6.0e-124 448.7 345 71.0
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.8e-110 402.9 498 49.8
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 4.9e-110 402.5 517 44.7
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.0e-102 378.3 296 66.6
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.4e-101 374.4 373 59.0
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.2e-100 371.3 331 62.2
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.5e-85 320.5 324 56.2
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 5.3e-80 302.8 276 59.4
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 8.5e-78 295.4 246 62.2
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.1e-76 289.3 157 86.0
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.7e-75 285.8 218 63.3
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 5.2e-67 259.6 397 39.3
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.1e-64 250.4 140 84.3
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.3e-62 245.0 140 81.4
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.1e-61 241.9 140 82.9
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.6e-60 238.0 309 42.7
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.9e-54 217.2 224 58.5
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 2.3e-51 207.6 330 40.3
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 5.6e-45 186.4 164 59.1
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.5e-42 178.3 196 53.6
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.5e-39 167.2 100 78.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.3e-37 159.5 101 73.3
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.2e-26 125.6 374 27.8
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.3e-25 122.1 68 82.4
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 8.3e-25 119.4 147 53.7
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.3e-19 101.3 449 24.9
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.6e-15 88.6 92 54.3
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.6e-15 88.6 65 69.2
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 1.9e-13 81.6 61 68.9
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 6.8e-11 73.2 45 77.8
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 3.8e-09 67.4 38 81.6
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.1e-08 65.9 46 63.0
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 6.0e-07 60.1 64 53.1
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 1.3e-06 58.9 42 69.0
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 1.3e-06 58.9 42 69.0
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 6.6e-06 56.6 45 57.8
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 8.7e-06 56.2 51 60.8


User provided reference genes

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