Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g34870 Coffea canephora HOM05D000672 ORTHO05D037943 1.5e-35 152.5 88 100.0
Cc09_g07370 Coffea canephora HOM05D000672 ORTHO05D000522 2.0e-16 89.0 48 95.8
Rhsim13G0124500 Rhododendron simsii HOM05D000672 ORTHO05D000522 2.3e-12 75.5 45 86.7
TWI15G0477 Tripterygium wilfordii HOM05D000672 ORTHO05D000522 6.7e-12 73.9 45 84.4
Nitab4.5_0011416g0010 Nicotiana tabacum HOM05D000672 ORTHO05D000522 8.8e-12 73.6 45 86.7
Manes.14G125600 Manihot esculenta HOM05D000672 ORTHO05D000522 1.5e-11 72.8 45 82.2
Nitab4.5_0001181g0070 Nicotiana tabacum HOM05D000672 ORTHO05D000522 1.5e-11 72.8 45 86.7
TWI38G1420 Tripterygium wilfordii HOM05D000672 ORTHO05D000522 1.5e-11 72.8 46 80.4
QL05p064483 Quercus lobata HOM05D000672 ORTHO05D000522 2.0e-11 72.4 46 76.1
Peaxi162Scf00155g00029 Petunia axillaris HOM05D000672 ORTHO05D000522 2.5e-11 72.0 45 82.2
MD05G1265900 Malus domestica HOM05D000672 ORTHO05D000522 4.3e-11 71.2 45 80.0
Oeu063155.1 Olea europaea HOM05D000672 ORTHO05D000522 4.3e-11 71.2 46 78.3
Manes.06G052100 Manihot esculenta HOM05D000672 ORTHO05D000522 5.7e-11 70.9 45 80.0
vmacro03473 Vaccinium macrocarpon HOM05D000672 ORTHO05D000522 5.7e-11 70.9 45 82.2
CiPaw.09G146300 Carya illinoinensis HOM05D000672 ORTHO05D000522 7.4e-11 70.5 45 80.0
CAN.G660.47 Capsicum annuum HOM05D000672 ORTHO05D000522 1.3e-10 69.7 45 80.0
Lalb_Chr18g0058231 Lupinus albus HOM05D000672 ORTHO05D000522 1.3e-10 69.7 45 77.8
Oeu000509.1 Olea europaea HOM05D000672 ORTHO05D000522 1.3e-10 69.7 45 80.0
Thecc.06G011300 Theobroma cacao HOM05D000672 ORTHO05D000522 1.3e-10 69.7 45 80.0
SalBow8G4039 Salvia bowleyana HOM05D000672 ORTHO05D000522 1.7e-10 69.3 45 80.0
CSS0014596 Camellia sinensis var. sinensis HOM05D000672 ORTHO05D000522 2.2e-10 68.9 46 80.4
CSS0015356 Camellia sinensis var. sinensis HOM05D000672 ORTHO05D000522 2.2e-10 68.9 46 80.4
Lj1A1159T90 Lonicera japonica HOM05D000672 ORTHO05D000522 2.2e-10 68.9 47 76.6
Potri.001G461400 Populus trichocarpa HOM05D000672 ORTHO05D000522 2.2e-10 68.9 47 76.6
Prupe.4G099600 Prunus persica HOM05D000672 ORTHO05D000522 2.2e-10 68.9 45 77.8
Sabra16G0313100 Salix brachista HOM05D000672 ORTHO05D000522 2.2e-10 68.9 47 76.6
Sabra16G0314200 Salix brachista HOM05D000672 ORTHO05D000522 2.2e-10 68.9 47 76.6
MSTRG.16303 Avicennia marina HOM05D000672 ORTHO05D000522 2.8e-10 68.6 46 78.3
CANSAT35G1071 Cannabis sativa HOM05D000672 ORTHO05D000522 2.8e-10 68.6 45 77.8
DCAR_000836 Daucus carota HOM05D000672 ORTHO05D000522 2.8e-10 68.6 45 80.0
Migut.M01919 Erythranthe guttata HOM05D000672 ORTHO05D000522 2.8e-10 68.6 48 77.1
Eucgr.D01627 Eucalyptus grandis HOM05D000672 ORTHO05D000522 3.7e-10 68.2 44 79.5
Phvul.006G124500 Phaseolus vulgaris HOM05D000672 ORTHO05D000522 3.7e-10 68.2 45 77.8
Haze_05931 Corylus avellana HOM05D000672 ORTHO05D000522 4.8e-10 67.8 45 75.6
Lalb_Chr15g0088931 Lupinus albus HOM05D000672 ORTHO05D000522 4.8e-10 67.8 45 75.6
PGSC0003DMG400021106 Solanum tuberosum HOM05D000672 ORTHO05D000522 4.8e-10 67.8 45 80.0
FvH4_3g11240 Fragaria vesca HOM05D000672 ORTHO05D000522 6.3e-10 67.4 45 75.6
FAN16G2244 Fragaria x ananassa HOM05D000672 ORTHO05D000522 6.3e-10 67.4 45 75.6
FAN21G1199 Fragaria x ananassa HOM05D000672 ORTHO05D000522 6.3e-10 67.4 45 75.6
Glyma.15G134400 Glycine max HOM05D000672 ORTHO05D000522 6.3e-10 67.4 48 77.1
RcHm_v2.0_Chr5g0018181 Rosa chinensis HOM05D000672 ORTHO05D000522 6.3e-10 67.4 45 75.6
Cpa.g.sc1465.1 Carica papaya HOM05D000672 ORTHO05D000522 8.2e-10 67.0 45 75.6
Duzib235G0756 Durio zibethinus HOM05D000672 ORTHO05D000522 8.2e-10 67.0 45 82.2
Lj6g0007223 Lotus japonicus HOM05D000672 ORTHO05D000522 8.2e-10 67.0 45 75.6
Atru.chr3.2924 Acer truncatum HOM05D000672 ORTHO05D000522 1.1e-09 66.6 44 77.3
Solyc02g070210.3 Solanum lycopersicum HOM05D000672 ORTHO05D000522 1.1e-09 66.6 45 77.8
Sopen02g019310 Solanum pennellii HOM05D000672 ORTHO05D000522 1.1e-09 66.6 45 77.8
FAN25G0609 Fragaria x ananassa HOM05D000672 ORTHO05D000522 1.4e-09 66.2 45 73.3
Ca_00889_v3 Cicer arietinum L. HOM05D000672 ORTHO05D000522 1.8e-09 65.9 44 79.5
Glyma.09G028400 Glycine max HOM05D000672 ORTHO05D000522 2.4e-09 65.5 47 76.6
ClCG03G008460 Citrullus lanatus HOM05D000672 ORTHO05D000522 3.1e-09 65.1 46 71.7
TPR.G15186 Trifolium pratense HOM05D000672 ORTHO05D000522 3.1e-09 65.1 45 75.6
DCAR_005643 Daucus carota HOM05D000672 ORTHO05D000522 4.1e-09 64.7 47 70.2
Medtr2g031610 Medicago truncatula HOM05D000672 ORTHO05D000522 5.3e-09 64.3 45 73.3
Cfa000781 Carpinus fangiana HOM05D000672 ORTHO05D000522 6.9e-09 63.9 45 71.1
CsaV3_1G037550 Cucumis sativus L. HOM05D000672 ORTHO05D000522 6.9e-09 63.9 46 71.7
GSVIVG01021727001 Vitis vinifera HOM05D000672 ORTHO05D000522 6.9e-09 63.9 45 80.0
Psat1g164840 Pisum sativum HOM05D000672 ORTHO05D000522 9.1e-09 63.5 45 73.3
TAR629G2188 Trochodendron aralioides HOM05D000672 ORTHO05D000522 9.1e-09 63.5 45 71.1
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 1.2e-08 63.2 43 74.4
TAR627G0665 Trochodendron aralioides HOM05D000672 ORTHO05D000522 1.2e-08 63.2 44 75.0
Atru.chr3.4000 Acer truncatum HOM05D000672 ORTHO05D037943 1.5e-08 62.8 44 72.7
AUR62022253 Chenopodium quinoa HOM05D000672 ORTHO05D000522 1.5e-08 62.8 46 71.7
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 2.0e-08 62.4 43 72.1
MELO3C002863.2 Cucumis melo HOM05D000672 ORTHO05D000522 2.0e-08 62.4 46 67.4
Gohir.D02G106800 Gossypium hirsutum HOM05D000672 ORTHO05D000522 2.6e-08 62.0 45 73.3
Dinv03728 Davidia involucrata HOM05D000672 ORTHO05D000522 3.4e-08 61.6 45 71.1
Sed0025745 Sechium edule HOM05D000672 ORTHO05D000522 3.4e-08 61.6 45 73.3
VMungo0540G1453 Vigna mungo HOM05D000672 ORTHO05D000522 3.4e-08 61.6 45 71.1
AUR62031968 Chenopodium quinoa HOM05D000672 ORTHO05D000522 4.5e-08 61.2 46 69.6
MBI02_g02732_MAGBIO Magnolia biondii HOM05D000672 ORTHO05D000522 4.5e-08 61.2 46 69.6
Sp1g26590 Schrenkiella parvula HOM05D000672 ORTHO05D000522 4.5e-08 61.2 47 70.2
BcaB03g13820 Brassica carinata HOM05D000672 ORTHO05D000522 5.9e-08 60.8 46 69.6
Lj2A336G36 Lonicera japonica HOM05D000672 ORTHO05D000522 5.9e-08 60.8 46 67.4
Gorai.005G121300 Gossypium raimondii HOM05D000672 ORTHO05D000522 7.7e-08 60.5 45 73.3
Dinv19590 Davidia involucrata HOM05D000672 ORTHO05D000522 1.0e-07 60.1 67 47.8
SGA_v2.0_scaffold1G00290 Striga asiatica HOM05D000672 ORTHO05D000522 1.0e-07 60.1 44 70.5
A07p09750 Brassica napus HOM05D000672 ORTHO05D000522 1.3e-07 59.7 46 67.4
BraA07t28768Z Brassica rapa HOM05D000672 ORTHO05D000522 1.3e-07 59.7 46 67.4
Hund07641 Selenicereus undatus HOM05D000672 ORTHO05D000522 1.3e-07 59.7 46 69.6
Ciclev10015053m.g Citrus clementina HOM05D000672 ORTHO05D000522 1.7e-07 59.3 45 66.7
Aqoxy1G01500 Aquilegia oxysepala HOM05D000672 ORTHO05D000522 2.2e-07 58.9 45 64.4
CARHR030160 Cardamine hirsuta HOM05D000672 ORTHO05D000522 2.2e-07 58.9 44 70.5
Prupe.4G134100 Prunus persica HOM05D000672 ORTHO05D000522 2.2e-07 58.9 44 68.2
Sc12g0010010 Simmondsia chinensis HOM05D000672 ORTHO05D000522 2.2e-07 58.9 42 73.8
BcaC05g27093 Brassica carinata HOM05D000672 ORTHO05D000522 2.9e-07 58.5 45 68.9
C05p29750 Brassica napus HOM05D000672 ORTHO05D000522 2.9e-07 58.5 45 68.9
BolC5t31703H Brassica oleracea HOM05D000672 ORTHO05D000522 2.9e-07 58.5 45 68.9
Thhalv10007252m.g Eutrema salsugineum HOM05D000672 ORTHO05D000522 2.9e-07 58.5 45 68.9
Aa31LG10G6490 Aethionema arabicum HOM05D000672 ORTHO05D000522 3.8e-07 58.2 44 70.5
BolC7t42003H Brassica oleracea HOM05D000672 ORTHO05D000522 3.8e-07 58.2 64 50.0
PGR083G2371 Punica granatum HOM05D000672 ORTHO05D000522 3.8e-07 58.2 45 66.7
THA.LOC104814343 Tarenaya hassleriana HOM05D000672 ORTHO05D000522 3.8e-07 58.2 42 69.0
C07p15000 Brassica napus HOM05D000672 ORTHO05D000522 5.0e-07 57.8 63 52.4
QL04p088493 Quercus lobata HOM05D000672 ORTHO05D000522 1.4e-06 56.2 43 69.8
CiPaw.11G061800 Carya illinoinensis HOM05D000672 ORTHO05D000522 1.9e-06 55.8 43 67.4
THA.LOC104812692 Tarenaya hassleriana HOM05D000672 ORTHO05D000522 1.9e-06 55.8 45 64.4
CDE01G0470 Ceratophyllum demersum HOM05D000672 ORTHO05D000522 2.5e-06 55.5 45 62.2
QL04p088952 Quercus lobata HOM05D000672 ORTHO05D000522 2.5e-06 55.5 43 67.4
GSVIVG01036782001 Vitis vinifera HOM05D000672 ORTHO05D000522 2.5e-06 55.5 46 58.7
AT1G30690 Arabidopsis thaliana HOM05D000672 ORTHO05D000522 3.2e-06 55.1 43 67.4
EL10Ac9g21171 Beta vulgaris HOM05D000672 ORTHO05D000522 3.2e-06 55.1 47 63.8
AL1G44750 Arabidopsis lyrata HOM05D000672 ORTHO05D000522 4.2e-06 54.7 43 67.4


User provided reference genes

Program Settings