Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g34430 Coffea canephora HOM05D006842 ORTHO05D020317 4.1e-69 265.4 231 100.0
PGSC0003DMG400006810 Solanum tuberosum HOM05D030225 ORTHO05D020317 9.0e-16 88.2 93 49.5
Cc02_g34450 Coffea canephora HOM05D000162 ORTHO05D000090 4.5e-15 85.9 158 87.3
Cc07_g18920 Coffea canephora HOM05D030225 ORTHO05D020317 7.1e-13 78.6 70 52.9
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 2.5e-10 70.1 80 43.8
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 1.3e-09 67.8 80 42.5
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 2.2e-09 67.0 80 42.5
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 3.7e-09 66.2 80 42.5
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 1.1e-08 64.7 80 37.5
Migut.F00887 Erythranthe guttata HOM05D000162 ORTHO05D000090 1.1e-08 64.7 79 40.5
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 1.1e-08 64.7 118 28.0
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 3.1e-08 63.2 80 36.2
Peaxi162Scf00154g00319 Petunia axillaris HOM05D000162 ORTHO05D000090 4.1e-08 62.8 96 31.2
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 5.3e-08 62.4 80 38.8
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 6.9e-08 62.0 76 38.2
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 6.9e-08 62.0 75 37.3
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 6.9e-08 62.0 75 37.3
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 6.9e-08 62.0 75 37.3
THA.LOC104819595 Tarenaya hassleriana HOM05D007083 ORTHO05D008801 6.9e-08 62.0 82 39.0
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 9.0e-08 61.6 87 31.0
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 1.2e-07 61.2 80 37.5
PSO832G3824 Papaver somniferum HOM05D007155 ORTHO05D003034 1.2e-07 61.2 83 36.1
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 2.0e-07 60.5 122 27.9
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 2.6e-07 60.1 87 32.2
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 2.6e-07 60.1 80 36.2
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 2.6e-07 60.1 80 36.2
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 2.6e-07 60.1 81 35.8
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 3.4e-07 59.7 81 35.8
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 3.4e-07 59.7 85 31.8
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 3.4e-07 59.7 86 31.4
Zm00001eb151970 Zea mays HOM05D059268 ORTHO05D009424 4.5e-07 59.3 80 38.8
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 5.9e-07 58.9 79 36.7
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 5.9e-07 58.9 83 36.1
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.9e-07 58.9 80 36.2
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 5.9e-07 58.9 63 44.4
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 5.9e-07 58.9 80 37.5
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 7.7e-07 58.5 80 35.0
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 7.7e-07 58.5 80 33.8
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 7.7e-07 58.5 86 33.7
COL.COLO4_30370 Corchorus olitorius HOM05D000062 ORTHO05D001642 1.0e-06 58.2 80 37.5
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 1.0e-06 58.2 80 32.5
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 1.0e-06 58.2 81 35.8
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.0e-06 58.2 81 35.8
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.0e-06 58.2 81 35.8
Gorai.009G384000 Gossypium raimondii HOM05D000162 ORTHO05D000090 1.0e-06 58.2 93 35.5
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 1.0e-06 58.2 81 33.3
Manes.13G004200 Manihot esculenta HOM05D000162 ORTHO05D000090 1.0e-06 58.2 110 32.7
Oeu025802.1 Olea europaea HOM05D017826 ORTHO05D018164 1.0e-06 58.2 100 30.0
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 1.0e-06 58.2 80 35.0
Aqoxy5G04021 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 1.3e-06 57.8 84 38.1
AT4G19440 Arabidopsis thaliana HOM05D007551 ORTHO05D009424 1.3e-06 57.8 79 35.4
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 1.3e-06 57.8 79 34.2
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 1.3e-06 57.8 80 33.8
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 1.3e-06 57.8 118 28.8
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 1.3e-06 57.8 79 36.7
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 1.3e-06 57.8 86 33.7
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 1.3e-06 57.8 83 36.1
vmacro05074 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.3e-06 57.8 85 37.6
Migut.N00244 Erythranthe guttata HOM05D000162 ORTHO05D000090 1.7e-06 57.4 83 39.8
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.7e-06 57.4 86 31.4
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 1.7e-06 57.4 86 31.4
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 1.7e-06 57.4 81 32.1
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 1.7e-06 57.4 88 31.8
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 1.7e-06 57.4 77 37.7
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 1.7e-06 57.4 80 35.0
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 2.2e-06 57.0 83 30.1
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 2.2e-06 57.0 69 39.1
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 2.2e-06 57.0 80 32.5
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 2.2e-06 57.0 79 34.2
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 2.2e-06 57.0 68 38.2
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 2.2e-06 57.0 81 34.6
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 2.2e-06 57.0 81 35.8
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 2.2e-06 57.0 79 34.2
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 2.2e-06 57.0 81 33.3
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 2.9e-06 56.6 80 33.8
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 2.9e-06 56.6 85 30.6
Carub.0007s2177 Capsella rubella HOM05D007551 ORTHO05D009424 2.9e-06 56.6 79 35.4
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 2.9e-06 56.6 83 37.3
MBI05_g00435_MAGBIO Magnolia biondii HOM05D006596 ORTHO05D008497 2.9e-06 56.6 78 37.2
PSO675G5598 Papaver somniferum HOM05D008994 ORTHO05D010954 2.9e-06 56.6 75 36.0
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 2.9e-06 56.6 81 34.6
Sp3g23550 Schrenkiella parvula HOM05D000001 ORTHO05D010596 2.9e-06 56.6 85 36.5
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 2.9e-06 56.6 79 34.2
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 3.8e-06 56.2 80 31.2
MSTRG.8436 Avicennia marina HOM05D000001 ORTHO05D010013 3.8e-06 56.2 81 34.6
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 3.8e-06 56.2 79 32.9
Dinv37453 Davidia involucrata HOM05D007551 ORTHO05D009424 3.8e-06 56.2 81 33.3
Lj1g0020796 Lotus japonicus HOM05D000104 ORTHO05D009920 3.8e-06 56.2 81 33.3
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 3.8e-06 56.2 79 34.2
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 3.8e-06 56.2 81 32.1
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 3.8e-06 56.2 81 35.8
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.8e-06 56.2 93 33.3
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 3.8e-06 56.2 79 34.2
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 3.8e-06 56.2 80 32.5
vmacro10382 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 3.8e-06 56.2 86 34.9
Aa31LG6G2050 Aethionema arabicum HOM05D007551 ORTHO05D009424 5.0e-06 55.8 79 35.4
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 5.0e-06 55.8 81 37.0
arahy.Tifrunner.gnm1.ann1.947KSG Arachis hypogaea HOM05D000162 ORTHO05D000090 5.0e-06 55.8 79 34.2
MSTRG.22731 Avicennia marina HOM05D000424 ORTHO05D000355 5.0e-06 55.8 71 36.6
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 5.0e-06 55.8 67 32.8
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 5.0e-06 55.8 76 31.6
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 5.0e-06 55.8 80 32.5
CANSAT80G1453 Cannabis sativa HOM05D000855 ORTHO05D008530 6.5e-06 55.5 80 32.5
DCAR_025499 Daucus carota HOM05D006819 ORTHO05D008763 6.5e-06 55.5 69 40.6
Migut.L00974 Erythranthe guttata HOM05D007155 ORTHO05D003034 6.5e-06 55.5 76 35.5
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 6.5e-06 55.5 80 31.2
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 6.5e-06 55.5 94 31.9
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 6.5e-06 55.5 79 34.2
Nitab4.5_0005913g0040 Nicotiana tabacum HOM05D007402 ORTHO05D003673 6.5e-06 55.5 98 28.6
PSO170G2891 Papaver somniferum HOM05D010315 ORTHO05D017908 6.5e-06 55.5 58 41.4
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 6.5e-06 55.5 80 31.2
RhsimUnG0118600 Rhododendron simsii HOM05D000855 ORTHO05D008530 6.5e-06 55.5 80 32.5
SalBow3G0344 Salvia bowleyana HOM05D000162 ORTHO05D000090 6.5e-06 55.5 73 39.7
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 6.5e-06 55.5 80 33.8
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 6.5e-06 55.5 80 33.8
HPP92_013845 Vanilla planifolia HOM05D007551 ORTHO05D009424 6.5e-06 55.5 77 39.0
HPP92_013860 Vanilla planifolia HOM05D007551 ORTHO05D009424 6.5e-06 55.5 77 39.0
Aqoxy5G03349 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 8.5e-06 55.1 88 34.1
BcaC06g36074 Brassica carinata HOM05D007083 ORTHO05D008801 8.5e-06 55.1 73 37.0
C07p08180 Brassica napus HOM05D007083 ORTHO05D008801 8.5e-06 55.1 73 37.0
BolC7t41234H Brassica oleracea HOM05D007083 ORTHO05D008801 8.5e-06 55.1 73 37.0
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 8.5e-06 55.1 87 32.2
Ciclev10006999m.g Citrus clementina HOM05D024618 ORTHO05D018209 8.5e-06 55.1 90 33.3
COL.COLO4_12924 Corchorus olitorius HOM05D006819 ORTHO05D008763 8.5e-06 55.1 78 35.9
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 8.5e-06 55.1 87 32.2
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 8.5e-06 55.1 114 39.5


User provided reference genes

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