Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 2053.9 975 100.0
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1683.7 958 81.3
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1682.2 974 81.0
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1644.4 973 78.1
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1644.0 973 78.3
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1637.9 972 78.6
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1637.9 975 77.4
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1637.5 973 77.8
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1636.3 973 78.0
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1635.9 972 78.5
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1635.5 973 77.6
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1632.8 981 79.1
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1628.2 975 77.1
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1625.9 975 76.7
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1621.7 975 78.3
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1619.0 973 77.0
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1616.3 972 77.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1613.6 989 76.4
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1612.8 975 77.5
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1610.9 976 76.7
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1608.6 977 76.6
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1607.8 972 76.7
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1607.0 975 77.1
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1607.0 977 76.7
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1603.6 972 76.3
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1598.9 976 76.5
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1597.8 976 76.1
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1597.4 968 76.4
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1593.6 975 76.1
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1592.8 977 76.8
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1589.3 977 75.4
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1585.9 978 75.4
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1583.9 969 76.8
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1582.0 975 75.4
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1580.1 978 76.1
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1579.3 978 76.3
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1578.5 976 75.1
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1574.7 977 75.7
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1573.5 984 74.5
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1571.6 974 74.8
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1571.6 973 75.3
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1564.7 964 75.3
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1561.6 979 74.8
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1561.2 966 75.4
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1560.8 966 75.3
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1559.3 965 75.6
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1558.1 974 74.7
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1555.4 965 75.4
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1554.7 972 74.5
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1553.9 979 74.7
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 965 75.1
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1551.6 974 75.4
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1550.0 973 74.3
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1550.0 966 75.2
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1548.9 964 75.2
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1548.9 965 74.9
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1547.7 968 75.0
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1544.3 975 74.7
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1543.9 978 73.6
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1542.7 968 74.7
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1541.6 969 74.9
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1541.2 972 73.9
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1538.9 975 73.5
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1538.1 960 75.0
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1536.9 970 74.8
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 974 73.8
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 975 74.7
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1532.3 964 73.3
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1531.5 943 76.4
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1529.2 977 74.2
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1528.5 962 75.3
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1527.3 988 72.8
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1524.6 976 72.7
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 972 73.8
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1520.8 969 73.7
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1518.8 983 72.9
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1518.4 975 72.9
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1518.4 987 72.5
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1517.7 972 73.3
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1517.3 974 72.9
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1514.6 978 72.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1511.9 976 71.8
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1511.1 980 72.7
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1510.7 975 71.5
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1506.5 978 72.4
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1498.4 926 75.1
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1496.1 980 72.0
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1493.4 977 71.8
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1489.6 973 71.2
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1489.6 876 78.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1481.5 968 72.2
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1464.5 980 70.7
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1463.0 975 69.9
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1451.4 978 68.6
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1448.0 979 70.0
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1447.6 979 69.8
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1446.8 964 70.0
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1440.2 979 69.9
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1439.9 981 69.6
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1437.2 986 69.1
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1436.8 1003 68.7
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1433.7 980 69.7
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1433.7 979 69.2
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1432.5 981 68.1
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1429.5 974 69.5
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1424.5 981 69.2
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1424.5 981 69.2
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1410.6 870 74.4
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1408.3 978 68.2
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1407.5 978 68.2
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1396.7 976 67.9
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1396.7 981 68.2
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1394.0 980 68.2
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1391.3 976 67.7
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1386.7 851 75.2
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1375.5 855 74.4
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1373.6 986 67.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1372.8 1013 64.8
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1324.7 762 79.4
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1321.6 977 65.2
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1306.2 981 65.4
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1286.6 982 64.3
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1263.1 789 75.4
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1248.8 853 69.4
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1234.9 770 74.2
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1219.1 789 72.4
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1179.9 785 70.8
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 3.6e-308 1061.6 978 53.5
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.9e-304 1049.3 687 71.5
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.9e-296 1022.7 961 53.5
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 8.1e-292 1007.3 720 67.5
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.0e-279 964.5 972 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 2.1e-271 939.5 961 49.1
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.1e-267 927.2 977 49.3
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.9e-264 916.4 565 76.1
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 4.7e-239 832.0 843 51.2
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.8e-206 723.8 402 80.1
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 4.5e-133 479.9 281 79.4
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 4.4e-120 436.8 343 62.1
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 7.7e-117 426.0 413 55.0
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 3.6e-114 417.2 364 59.9
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.1e-99 369.0 215 80.0
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 2.8e-90 337.8 275 60.0
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.8e-89 335.1 202 71.8
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.1e-86 325.9 192 79.7
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 2.2e-71 275.0 214 63.6
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.2e-71 275.0 159 78.6
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.8e-65 255.4 159 73.6
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.1e-62 246.1 143 79.7
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 3.0e-60 238.0 662 29.0
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 2.3e-52 211.8 369 38.2
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.1e-41 176.4 785 24.2
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.4e-41 176.0 149 59.7
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 2.0e-40 172.2 94 84.0
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 1.9e-38 165.6 150 55.3
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.1e-36 157.5 163 48.5
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 8.7e-36 156.8 96 77.1
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 8.7e-36 156.8 149 53.7
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 9.0e-33 146.7 91 74.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.9e-30 139.0 88 70.5
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 7.4e-27 127.1 97 58.8
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 6.5e-23 114.0 183 36.1
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.4e-20 106.3 118 50.0
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 5.1e-20 104.4 182 35.2
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 4.8e-18 97.8 122 45.1
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 6.3e-18 97.4 114 48.2
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.8e-17 95.9 189 33.9
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.5e-14 84.3 57 64.9
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.0e-12 80.1 47 78.7
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 5.1e-12 77.8 71 57.7
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 7.4e-11 73.9 75 50.7
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.9e-07 62.0 78 42.3
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 9.4e-06 57.0 44 56.8


User provided reference genes

Program Settings