Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 0.0e+00 1097.8 552 100.0
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.3e-217 760.0 552 71.2
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.1e-216 756.9 576 68.9
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.6e-215 753.1 519 73.8
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.7e-215 752.3 542 71.2
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 2.7e-215 752.3 572 68.4
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 2.9e-214 748.8 525 71.6
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.1e-213 746.9 496 75.2
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.1e-213 746.9 495 76.2
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.2e-213 745.3 570 69.5
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 5.5e-213 744.6 550 70.2
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 9.4e-213 743.8 572 69.2
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.2e-212 743.4 572 69.2
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.1e-212 742.7 575 68.5
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.7e-212 741.5 504 73.8
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.7e-212 741.5 576 68.4
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.4e-211 740.0 576 68.8
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.4e-211 740.0 554 69.7
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 2.3e-211 739.2 572 67.8
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.0e-211 738.8 581 66.4
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 3.4e-210 735.3 486 75.7
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 7.5e-210 734.2 548 68.8
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.7e-209 731.9 569 67.8
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 6.3e-209 731.1 577 67.1
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 8.3e-209 730.7 475 76.6
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.4e-208 729.2 557 67.0
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 4.1e-208 728.4 502 72.7
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 5.4e-208 728.0 580 66.6
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 7.0e-208 727.6 578 68.0
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 9.1e-208 727.2 446 78.9
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.7e-206 723.0 545 69.0
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 1.7e-206 723.0 543 68.5
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 8.6e-206 720.7 567 66.8
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 8.6e-206 720.7 569 67.0
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.5e-205 719.9 493 73.2
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 4.3e-205 718.4 572 67.0
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.2e-205 717.6 546 68.5
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 2.1e-204 716.1 560 67.3
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.7e-204 714.9 507 72.8
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 4.7e-204 714.9 554 67.9
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.0e-203 713.8 476 73.7
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 5.2e-203 711.4 556 66.7
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 5.2e-203 711.4 588 63.3
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 3.4e-202 708.8 495 71.7
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 4.4e-202 708.4 538 67.5
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 4.4e-202 708.4 572 65.6
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 5.7e-202 708.0 437 80.1
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 7.5e-202 707.6 478 74.5
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.3e-201 706.8 460 76.1
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 2.9e-201 705.7 554 67.3
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 3.7e-201 705.3 453 75.1
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 4.9e-201 704.9 543 66.3
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 4.9e-201 704.9 453 75.1
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 8.3e-201 704.1 454 75.1
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.4e-200 703.4 552 66.7
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.4e-200 702.6 553 66.9
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.6e-199 698.4 521 68.1
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 5.0e-198 694.9 572 64.0
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.1e-197 693.7 548 65.7
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 2.5e-197 692.6 473 71.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 2.5e-197 692.6 473 71.7
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 4.3e-197 691.8 543 65.4
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 5.6e-197 691.4 478 70.9
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.2e-196 690.3 471 71.8
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.2e-196 690.3 471 71.8
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 4.7e-196 688.3 549 65.0
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 4.7e-196 688.3 473 71.5
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 6.2e-196 688.0 574 63.9
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.0e-195 687.2 567 64.0
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.3e-195 686.0 471 71.8
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 6.8e-195 684.5 567 63.7
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 6.8e-195 684.5 471 71.5
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 6.8e-195 684.5 476 70.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 6.8e-195 684.5 485 69.9
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.2e-194 683.7 501 70.1
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 2.0e-194 682.9 562 63.7
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.4e-194 682.2 525 66.9
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.4e-194 681.8 525 66.9
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 9.8e-194 680.6 580 63.3
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.7e-193 679.9 542 65.1
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 2.2e-193 679.5 572 62.8
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.9e-193 679.1 544 64.9
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 2.9e-193 679.1 472 70.1
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 3.7e-193 678.7 552 65.9
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 4.9e-193 678.3 557 63.4
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 6.4e-193 677.9 469 71.4
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 8.3e-193 677.6 474 71.1
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 3.2e-192 675.6 550 64.0
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 3.5e-191 672.2 480 69.4
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.6e-191 671.8 629 58.5
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.3e-190 670.2 466 71.7
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.3e-189 665.6 518 66.4
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 4.3e-189 665.2 465 71.6
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.1e-187 660.6 469 70.6
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-186 657.1 524 64.9
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 4.4e-186 655.2 577 61.9
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 9.8e-186 654.1 449 72.2
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.7e-185 653.3 572 60.1
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.9e-185 652.5 486 67.9
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 3.7e-185 652.1 490 66.1
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 4.9e-185 651.7 516 64.5
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.6e-183 646.7 472 68.4
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 6.0e-183 644.8 454 69.8
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.5e-181 640.2 553 63.5
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 5.6e-181 638.3 580 60.7
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.8e-180 636.0 469 65.9
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 4.7e-180 635.2 569 58.2
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.4e-179 633.6 569 59.2
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 3.1e-179 632.5 685 53.1
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.5e-178 630.2 455 69.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.6e-178 629.4 469 65.2
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.2e-177 626.3 471 66.9
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 4.1e-176 622.1 474 64.6
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 7.8e-175 617.8 454 67.0
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.5e-165 586.3 463 63.5
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 1.7e-161 573.5 537 57.2
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.4e-155 553.1 366 74.9
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.9e-152 543.5 363 74.7
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.0e-150 537.7 502 59.4
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.0e-150 537.7 342 77.8
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.9e-144 516.9 390 66.4
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.1e-140 503.4 479 53.4
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 4.1e-139 499.2 361 70.9
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.6e-138 496.5 548 50.9
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 5.1e-134 482.3 471 52.0
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 5.1e-134 482.3 361 67.3
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 8.7e-134 481.5 472 53.2
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 4.1e-123 446.0 363 66.1
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.4e-120 437.6 397 59.4
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.5e-120 436.8 332 67.5
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.5e-112 409.1 289 71.3
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 3.2e-104 383.3 236 77.1
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 2.0e-101 374.0 285 66.7
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 5.4e-99 365.9 483 44.3
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 4.5e-98 362.8 278 65.5
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 8.5e-97 358.6 479 43.8
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 4.2e-96 356.3 223 75.8
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 4.4e-93 346.3 308 60.1
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 9.8e-93 345.1 219 74.9
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 2.8e-92 343.6 221 77.4
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 5.4e-91 339.3 216 74.5
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.0e-86 325.1 291 58.1
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-84 318.2 288 61.1
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 5.0e-81 306.2 454 40.3
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.5e-80 304.7 201 72.1
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 6.2e-79 299.3 220 72.7
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 9.2e-75 285.4 283 61.5
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 2.5e-72 277.3 451 37.7
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 9.2e-67 258.8 273 48.7
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 9.5e-64 248.8 264 53.4
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.0e-61 241.1 206 65.5
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 5.4e-59 233.0 506 33.4
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 5.1e-57 226.5 194 59.3
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.5e-48 197.6 125 80.8
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 4.9e-44 183.3 114 74.6
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 4.9e-44 183.3 280 41.8
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.2e-42 178.7 125 62.4
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 1.9e-40 171.4 124 65.3
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.9e-36 156.8 120 64.2
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 9.3e-35 152.5 331 35.6
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 1.0e-33 149.1 94 72.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 1.8e-33 148.3 153 54.2
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 3.3e-32 144.1 327 33.9
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.6e-31 141.7 81 79.0
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 4.8e-31 140.2 85 76.5
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 8.2e-31 139.4 80 83.8
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.0e-28 132.5 76 80.3
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.2e-28 131.3 102 67.6
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.9e-28 130.2 77 81.8
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-27 129.0 190 44.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.1e-22 112.5 64 81.2
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 2.6e-21 107.8 94 55.3
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 3.4e-21 107.5 62 77.4
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 4.5e-21 107.1 90 62.2
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.0e-20 105.9 65 73.8
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 2.9e-20 104.4 80 66.2
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 2.5e-19 101.3 77 53.2
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 3.3e-16 90.9 52 75.0
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 3.1e-14 84.3 64 64.1
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 6.5e-12 76.6 51 68.6
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-11 75.5 159 37.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 9.4e-11 72.8 48 72.9
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.8e-09 68.6 112 40.2
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 8.2e-07 59.7 44 61.4
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 8.2e-07 59.7 42 61.9
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-06 58.9 155 30.3


User provided reference genes

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