Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 9.1e-181 636.7 309 100.0
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 1.3e-131 473.4 316 72.8
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 1.9e-130 469.5 304 73.7
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 4.7e-129 464.9 307 73.9
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.2e-128 461.5 306 73.2
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 8.9e-128 460.7 307 72.0
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 4.9e-126 454.9 313 70.9
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 4.9e-126 454.9 307 72.3
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 4.2e-125 451.8 297 72.7
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 9.3e-125 450.7 307 71.7
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 1.2e-124 450.3 306 71.9
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 4.6e-124 448.4 299 72.6
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 6.2e-121 438.0 307 69.4
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 1.2e-119 433.7 313 67.4
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 4.4e-119 431.8 307 68.7
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 4.4e-119 431.8 321 67.0
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 2.2e-118 429.5 308 68.5
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 6.4e-118 427.9 315 67.6
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 1.4e-117 426.8 304 68.1
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 3.2e-117 425.6 310 66.8
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 7.1e-117 424.5 304 66.8
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 1.2e-116 423.7 307 67.8
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 1.6e-116 423.3 303 67.0
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 6.0e-116 421.4 297 67.3
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.9e-116 421.0 300 66.0
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 6.6e-115 417.9 299 66.6
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 1.5e-114 416.8 297 67.0
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 1.5e-114 416.8 301 65.4
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 2.5e-114 416.0 308 66.2
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 4.3e-114 415.2 304 65.8
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 9.6e-114 414.1 298 65.4
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 1.3e-113 413.7 297 65.7
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 2.8e-113 412.5 308 66.6
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 4.8e-113 411.8 301 64.5
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 6.2e-113 411.4 297 65.7
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 6.2e-113 411.4 301 64.8
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 1.1e-112 410.6 300 66.0
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 1.4e-112 410.2 294 67.3
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 1.8e-112 409.8 306 67.0
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 3.1e-112 409.1 308 65.3
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 3.1e-112 409.1 318 62.9
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 4.0e-112 408.7 313 64.5
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 4.5e-111 405.2 306 66.3
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 5.8e-111 404.8 306 64.7
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 7.6e-111 404.4 301 64.8
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 9.9e-111 404.1 307 63.2
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 1.3e-110 403.7 306 65.4
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 1.7e-110 403.3 307 65.1
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 2.2e-110 402.9 307 62.9
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 2.9e-110 402.5 306 64.7
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 2.9e-110 402.5 299 64.5
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 6.4e-110 401.4 306 64.4
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 8.4e-110 401.0 309 63.1
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 1.4e-109 400.2 306 65.0
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 1.9e-109 399.8 296 65.5
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 2.4e-109 399.4 310 63.2
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 3.2e-109 399.1 299 64.2
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 5.4e-109 398.3 309 62.8
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 5.4e-109 398.3 297 65.3
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 9.3e-109 397.5 310 63.9
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.6e-108 396.7 307 62.5
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 4.6e-108 395.2 303 63.4
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 1.3e-107 393.7 304 62.5
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 1.8e-107 393.3 313 64.2
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 3.9e-107 392.1 301 64.1
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 5.1e-107 391.7 303 62.0
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 1.5e-106 390.2 299 63.2
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 3.3e-106 389.0 297 63.3
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 1.3e-105 387.1 297 63.3
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 4.8e-105 385.2 298 63.8
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.1e-104 382.5 301 62.1
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 9.0e-104 380.9 307 59.3
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 9.0e-104 380.9 300 63.7
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 1.2e-103 380.6 313 61.3
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 1.5e-103 380.2 308 60.4
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 5.8e-103 378.3 302 61.3
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.3e-102 377.1 310 60.3
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 1.7e-102 376.7 293 61.1
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 5.1e-99 365.2 300 59.3
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 8.7e-99 364.4 303 58.1
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 4.3e-98 362.1 309 57.0
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 6.9e-96 354.8 249 70.7
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 5.0e-94 348.6 295 60.7
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 7.2e-93 344.7 304 55.9
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 1.8e-88 330.1 313 55.6
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 6.9e-88 328.2 253 62.8
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 1.2e-84 317.4 233 65.7
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 2.3e-83 313.2 237 65.0
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 6.7e-83 311.6 236 64.8
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 1.3e-78 297.4 430 39.3
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 8.5e-78 294.7 301 51.2
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 1.0e-75 287.7 205 67.8
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 5.1e-75 285.4 276 52.5
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 4.1e-72 275.8 216 63.9
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 6.5e-70 268.5 204 66.2
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 4.2e-69 265.8 194 64.9
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.8e-64 250.4 289 49.5
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 3.1e-64 249.6 192 66.1
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 4.5e-63 245.7 308 44.2
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.0e-59 234.6 201 56.7
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 3.7e-57 226.1 258 47.7
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.7e-55 219.9 287 44.9
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 5.9e-55 218.8 168 61.3
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 3.6e-52 209.5 165 62.4
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 1.0e-51 208.0 130 73.8
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 4.0e-51 206.1 172 60.5
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 2.0e-50 203.8 138 68.1
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 1.1e-48 198.0 168 58.3
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 2.4e-48 196.8 129 68.2
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 2.4e-48 196.8 129 68.2
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 2.4e-48 196.8 129 68.2
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 1.7e-46 190.7 133 63.9
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 5.2e-43 179.1 167 54.5
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.5e-42 175.3 102 74.5
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.7e-41 172.9 156 58.3
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 1.9e-37 160.6 118 68.6
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 3.7e-33 146.4 123 55.3
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 1.6e-28 131.0 101 66.3
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.0e-22 111.7 98 62.2
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.9e-21 107.5 103 53.4
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.9e-21 107.5 103 53.4
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.5e-21 107.1 105 52.4
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.3e-21 105.5 106 52.8
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 8.9e-19 98.6 161 36.0
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 5.8e-18 95.9 72 59.7
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 3.8e-17 93.2 142 38.0
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.4e-16 91.3 90 53.3
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.6e-10 68.9 56 62.5
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.1e-07 60.8 59 54.2


User provided reference genes

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