Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 1.4e-116 422.9 212 100.0
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 1.3e-66 256.9 212 65.1
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 1.3e-66 256.9 212 65.6
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 2.3e-66 256.1 212 64.6
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 3.9e-66 255.4 209 65.1
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 1.5e-65 253.4 215 64.7
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 3.7e-64 248.8 218 61.9
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 6.2e-64 248.1 213 64.3
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.2e-62 243.8 213 63.8
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.5e-62 243.4 212 62.7
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 1.0e-61 240.7 209 62.2
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 2.9e-61 239.2 213 61.0
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 5.0e-61 238.4 218 62.8
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 1.9e-60 236.5 212 62.3
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 1.9e-60 236.5 212 63.7
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 1.9e-60 236.5 210 64.3
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 7.2e-60 234.6 213 62.0
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 9.3e-60 234.2 212 61.8
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.7e-59 232.6 214 61.7
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.7e-59 232.6 214 61.7
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 6.1e-59 231.5 214 63.6
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 1.0e-58 230.7 212 62.7
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 1.0e-58 230.7 214 60.7
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 1.0e-58 230.7 212 61.8
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 1.3e-58 230.3 211 60.2
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 1.3e-58 230.3 214 60.7
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.3e-58 230.3 214 60.7
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 2.3e-58 229.6 222 59.9
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 3.0e-58 229.2 219 59.8
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 3.0e-58 229.2 210 62.4
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.9e-58 228.8 207 62.3
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 5.1e-58 228.4 219 59.4
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 5.1e-58 228.4 211 60.7
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 1.9e-57 226.5 217 60.4
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 3.3e-57 225.7 212 59.9
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 4.3e-57 225.3 213 58.7
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 1.6e-56 223.4 212 58.0
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 1.6e-56 223.4 225 58.2
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 2.2e-56 223.0 213 58.2
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 3.7e-56 222.2 213 60.6
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 3.7e-56 222.2 202 61.4
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 4.8e-56 221.9 156 69.2
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 8.2e-56 221.1 219 57.1
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 1.4e-55 220.3 220 58.6
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.8e-55 219.9 217 58.1
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 2.4e-55 219.5 212 57.5
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.4e-55 219.5 207 59.9
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 5.3e-55 218.4 200 60.5
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 6.9e-55 218.0 221 56.6
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.5e-54 216.9 218 58.7
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 1.5e-54 216.9 214 59.8
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 1.5e-54 216.9 213 59.2
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 1.5e-54 216.9 212 58.0
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 2.6e-54 216.1 152 68.4
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 3.4e-54 215.7 204 58.3
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 5.9e-54 214.9 214 59.3
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 7.7e-54 214.5 207 58.9
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 1.3e-53 213.8 209 57.4
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.7e-53 213.4 200 60.5
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 2.2e-53 213.0 210 56.7
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 2.9e-53 212.6 214 59.8
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 5.0e-53 211.8 214 57.0
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 5.0e-53 211.8 152 67.1
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 6.5e-53 211.5 199 60.3
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 8.5e-53 211.1 197 57.9
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 1.1e-52 210.7 167 62.9
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.4e-52 210.3 213 56.8
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 2.5e-52 209.5 211 57.8
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 2.5e-52 209.5 213 54.0
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 1.6e-51 206.8 147 69.4
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.6e-51 206.8 204 58.3
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 1.6e-51 206.8 204 58.3
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.6e-51 206.8 150 70.0
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 2.1e-51 206.5 212 56.6
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 3.6e-51 205.7 205 57.1
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 1.4e-50 203.8 114 82.5
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 1.8e-50 203.4 113 80.5
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 2.3e-50 203.0 152 68.4
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 3.0e-50 202.6 212 53.8
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 3.9e-50 202.2 153 64.7
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 3.9e-50 202.2 204 55.9
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 5.1e-50 201.8 113 80.5
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 2.0e-49 199.9 166 65.1
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 2.0e-49 199.9 204 54.9
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 9.7e-49 197.6 205 56.6
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 9.7e-49 197.6 214 53.7
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.3e-48 197.2 212 54.7
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 1.3e-48 197.2 199 54.8
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 2.8e-48 196.1 147 66.0
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 2.8e-48 196.1 174 58.0
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 2.8e-48 196.1 150 64.0
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 6.3e-48 194.9 198 54.5
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 6.3e-48 194.9 209 53.1
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 4.1e-47 192.2 133 69.2
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 4.1e-47 192.2 127 71.7
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 4.1e-47 192.2 127 71.7
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 5.3e-47 191.8 198 52.5
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 1.5e-46 190.3 204 53.4
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 2.0e-46 189.9 236 50.0
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 2.0e-46 189.9 174 58.0
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 2.0e-46 189.9 174 58.0
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.6e-46 189.5 181 60.2
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 3.4e-46 189.1 157 61.8
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 7.7e-46 188.0 183 57.9
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 1.7e-45 186.8 197 52.8
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 5.0e-45 185.3 197 53.3
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 5.0e-45 185.3 185 54.6
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 5.0e-45 185.3 192 53.1
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 1.4e-42 177.2 188 54.8
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 5.1e-42 175.3 149 59.7
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 6.7e-42 174.9 135 63.7
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 2.8e-40 169.5 185 54.1
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 4.8e-40 168.7 160 58.8
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 2.4e-39 166.4 205 49.3
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 4.1e-39 165.6 108 71.3
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 2.0e-38 163.3 120 63.3
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.6e-38 162.9 145 59.3
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 5.9e-38 161.8 109 70.6
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.8e-37 159.1 159 57.9
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 8.5e-37 157.9 113 63.7
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 3.2e-36 156.0 109 64.2
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 7.5e-33 144.8 182 48.4
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 1.2e-30 137.5 118 55.9
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 1.6e-27 127.1 146 44.5
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 2.6e-25 119.8 117 48.7
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 8.3e-24 114.8 123 49.6
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 8.3e-16 88.2 93 49.5
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 1.4e-07 60.8 127 37.0


User provided reference genes

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