Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 3498.0 1792 100.0
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2609.7 1799 75.7
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2566.6 1791 74.5
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2533.1 1800 73.8
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2526.1 1791 73.5
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2507.2 1814 72.6
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2497.6 1849 71.3
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2489.1 1811 72.3
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2486.4 1825 71.7
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2480.3 1793 72.9
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2476.8 1807 71.2
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2476.0 1823 71.7
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2462.6 1808 71.6
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2459.1 1809 71.2
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2449.9 1808 71.4
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2447.2 1816 71.5
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2436.4 1810 70.9
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2432.9 1808 71.0
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2422.1 1810 70.2
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2418.7 1790 71.1
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2414.4 1816 70.3
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2412.9 1808 70.5
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2410.6 1812 70.2
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2409.8 1816 70.0
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2407.9 1813 70.6
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2403.6 1801 70.6
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2401.3 1813 70.4
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2399.0 1808 70.4
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2395.2 1810 71.0
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2393.2 1809 69.0
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2382.8 1869 68.8
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2379.7 1809 69.9
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2378.2 1843 68.9
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2374.7 1825 69.6
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2372.4 1807 69.7
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2371.7 1791 69.5
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2367.4 1811 69.3
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2366.3 1802 69.2
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2363.6 1692 73.0
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2362.4 1813 69.7
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2360.1 1799 69.5
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2353.2 1814 69.2
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2341.2 1795 68.6
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2339.7 1813 69.1
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2329.7 1807 68.3
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2326.2 1806 68.0
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2325.1 1875 66.5
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2323.9 1809 67.6
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2315.8 1805 67.8
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2308.5 1807 67.3
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2308.5 1803 68.1
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2305.0 1810 67.5
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2302.7 1802 67.7
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2295.0 1804 67.9
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2294.2 1808 67.1
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2289.2 1804 67.7
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2278.4 1805 67.3
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2273.8 1814 67.5
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2272.3 1810 66.7
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2251.9 1796 66.7
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2239.9 1796 66.9
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2225.3 1803 65.9
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2218.4 1805 66.0
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2218.4 1805 66.0
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2214.5 1801 66.5
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2210.3 1804 65.5
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2209.5 1798 66.1
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2207.9 1796 65.8
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2195.2 1788 65.7
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2195.2 1808 65.9
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2185.6 1797 65.4
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2180.2 1725 67.6
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2143.2 1794 64.8
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2141.7 1792 64.5
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2132.1 1797 65.4
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2122.4 1797 63.7
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2094.3 1795 63.5
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2063.5 1803 63.2
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2046.6 1798 63.0
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2044.2 1811 63.7
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2025.4 1808 62.3
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2025.4 1813 62.1
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2008.8 1805 61.8
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2007.6 1813 61.2
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2003.4 1798 61.8
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 1999.9 1800 61.1
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1986.8 1780 61.7
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 1984.1 1808 61.1
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1973.0 1820 59.7
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 1960.3 1850 58.4
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1920.6 1793 60.1
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1910.6 1793 59.7
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1908.6 1793 59.6
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1906.7 1814 59.4
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1848.6 1785 58.7
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1833.9 1450 67.9
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1789.2 1808 55.0
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1760.3 1812 54.0
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1701.4 1376 66.6
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1662.1 1684 55.8
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1654.8 1294 68.2
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1637.9 1210 70.8
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1577.8 1574 58.3
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1570.4 1350 63.1
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1567.4 1340 63.4
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1487.2 1332 61.4
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1444.9 1787 49.2
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1373.6 1193 61.9
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1352.8 1966 44.0
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1290.0 968 70.5
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1228.4 1377 53.2
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1209.1 1821 43.8
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1204.9 1070 62.7
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1200.3 1906 41.6
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1187.9 1912 40.7
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1175.6 1952 40.3
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1142.5 1130 56.9
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 2.4e-297 1026.5 870 64.1
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 1.8e-292 1010.4 1346 46.4
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 9.4e-246 855.1 1475 39.5
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 7.5e-227 792.3 634 64.7
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 4.4e-211 740.0 449 82.6
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 4.3e-206 723.4 530 72.3
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 5.1e-191 673.3 466 74.0
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 7.1e-185 652.9 612 58.8
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 4.5e-179 633.6 494 70.2
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.5e-166 592.0 361 80.6
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 3.1e-164 584.3 361 80.9
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 1.5e-163 582.0 605 54.9
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 7.9e-160 569.7 335 85.1
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 3.7e-157 560.8 360 77.8
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.8e-156 558.5 426 65.0
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 5.5e-153 547.0 559 56.4
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 1.2e-139 502.7 474 59.9
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 1.6e-136 492.3 325 73.2
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.3e-130 472.6 361 69.3
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 1.7e-117 429.1 262 83.2
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.8e-111 409.1 399 57.4
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 4.0e-111 407.9 267 79.8
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 3.2e-100 371.7 426 50.9
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.3e-77 296.6 314 59.2
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 1.7e-77 296.2 311 58.5
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.2e-77 295.8 312 58.3
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 3.6e-51 208.8 144 72.9
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 2.4e-47 196.1 143 67.1
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 5.7e-25 121.7 71 88.7
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 3.7e-24 119.0 103 60.2
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 4.1e-23 115.5 70 84.3
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 7.0e-23 114.8 70 82.9
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 2.2e-16 93.2 66 69.7
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.2e-14 87.4 70 61.4
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 2.0e-14 86.7 204 28.4
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 5.0e-13 82.0 73 56.2
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 6.5e-13 81.6 73 56.2
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 8.6e-13 81.3 39 87.2
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.1e-12 80.9 34 100.0
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 6.8e-10 71.6 96 47.9
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 2.4e-07 63.2 37 81.1
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 3.1e-07 62.8 188 31.4


User provided reference genes

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