Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 2385.9 1115 100.0
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1859.7 1112 75.5
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1807.3 1112 73.2
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1802.7 1114 73.2
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1797.7 1114 73.2
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1792.7 1113 72.6
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1782.3 1125 72.4
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1777.3 1115 72.6
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1776.1 1110 73.4
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1767.3 1100 72.1
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1754.2 1113 71.2
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1750.7 1113 70.8
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1749.9 1113 71.0
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1748.8 1111 70.2
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1748.8 1113 71.0
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1748.0 1111 70.3
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1746.9 1113 71.1
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1743.4 1075 73.7
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1740.7 1112 71.0
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1737.6 1113 70.3
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1736.1 1114 70.8
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1736.1 1113 69.7
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 1732.6 1112 70.1
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1732.6 1112 71.0
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1728.4 1112 70.6
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1726.8 1068 74.3
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1723.4 1116 70.4
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1714.1 1122 69.1
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1713.7 1113 70.0
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1710.7 1114 69.4
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1702.2 1111 69.1
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1701.0 1126 69.1
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1694.1 1099 70.7
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1691.0 1051 73.2
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1691.0 1112 68.3
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1687.5 1101 70.4
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1686.0 1120 68.3
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1684.5 1112 69.3
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1684.5 1116 68.3
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1683.7 1114 68.7
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1681.4 1105 68.7
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1677.5 1124 68.3
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1677.5 1125 67.4
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1676.0 1111 68.2
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1675.2 1111 68.4
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1673.7 1114 67.8
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1673.3 1105 68.4
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1670.6 1226 63.6
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1665.2 1112 67.4
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1664.0 1108 67.8
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1662.9 1105 67.9
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1662.1 1112 66.8
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1661.7 1113 66.9
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1659.8 1114 68.1
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1659.4 1112 67.6
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1659.0 1104 67.6
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1658.3 1098 68.6
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1658.3 1120 67.5
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1657.5 1106 67.5
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1657.5 1112 67.3
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1656.0 1112 66.7
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1654.8 1106 67.5
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1654.0 1111 67.8
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1653.3 1112 67.1
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1651.7 1110 67.7
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1646.7 1114 67.0
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1645.6 1111 67.2
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1644.8 1120 67.2
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1642.5 1105 67.4
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1642.5 1111 66.9
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1640.2 1113 67.5
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1633.2 1100 68.1
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1625.5 1110 66.8
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1624.4 1110 66.8
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1616.3 1096 66.6
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1615.5 1113 67.5
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1610.1 1096 66.6
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1595.9 989 72.9
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1594.3 1112 65.5
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1584.3 1070 67.2
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1578.9 1122 64.4
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1578.5 1139 63.6
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1553.5 998 71.0
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1542.3 1102 63.2
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1533.1 1166 63.0
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1486.5 1073 63.1
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1431.4 926 69.3
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1403.3 900 70.8
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1399.0 1039 64.1
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1325.1 1133 55.0
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1299.6 1113 54.7
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1258.4 833 68.7
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1249.6 831 69.3
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1244.2 1103 53.4
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1236.9 749 75.4
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1184.9 760 71.8
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1171.4 1126 50.9
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1166.0 738 70.6
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1086.2 669 73.1
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 3.7e-309 1065.1 1124 47.5
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 4.0e-279 965.3 689 64.2
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.8e-266 923.3 680 64.1
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.0e-250 870.9 500 79.4
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 8.5e-229 798.1 569 64.7
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.8e-215 753.8 532 65.6
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 4.5e-214 749.2 532 65.6
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 6.0e-166 589.3 1511 29.5
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 5.3e-154 549.7 387 66.7
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 9.3e-151 538.9 616 46.1
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.5e-132 478.4 284 76.1
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.8e-117 428.3 274 74.1
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 2.6e-116 424.5 240 79.6
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 5.5e-111 406.8 581 39.6
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 2.8e-94 351.3 831 30.1
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 2.7e-89 334.7 258 58.5
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 1.3e-88 332.4 193 75.1
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 4.6e-81 307.4 174 80.5
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 1.1e-79 302.8 201 67.2
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.9e-79 302.0 208 65.9
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 3.0e-72 278.1 156 76.9
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.1e-62 245.4 208 53.4
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 6.0e-57 227.3 130 73.8
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 6.6e-56 223.8 166 64.5
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 9.3e-50 203.4 123 74.0
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 5.5e-42 177.6 124 66.1
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 7.6e-36 157.1 124 57.3
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 2.2e-35 155.6 123 53.7
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 3.8e-35 154.8 107 62.6
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 2.1e-33 149.1 138 48.6
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.8e-32 146.0 85 75.3
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 1.8e-32 146.0 82 76.8
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 3.0e-32 145.2 69 84.1
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.5e-31 142.9 70 81.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 3.3e-31 141.7 69 82.6
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 8.2e-30 137.1 142 54.2
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 1.8e-29 136.0 96 61.5
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 1.4e-24 119.8 119 57.1
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 8.8e-24 117.1 132 43.9
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 1.9e-23 115.9 66 71.2
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.1e-21 110.2 53 86.8
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 1.6e-17 96.3 111 42.3
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 2.1e-17 95.9 84 51.2
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 2.7e-17 95.5 99 47.5
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 3.6e-17 95.1 86 50.0
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 6.1e-17 94.4 138 44.2
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 5.1e-16 91.3 45 77.8
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 5.1e-16 91.3 45 77.8
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 1.5e-15 89.7 88 50.0
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 3.3e-15 88.6 45 77.8
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 2.8e-14 85.5 45 73.3
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 7.7e-12 77.4 56 58.9
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 2.8e-06 58.9 27 92.6


User provided reference genes

Program Settings