Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 0.0e+00 1245.3 620 100.0
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 1.0e-247 860.1 583 72.7
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 1.2e-235 820.1 536 73.9
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 1.1e-233 813.5 587 68.3
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 9.2e-233 810.4 589 67.6
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 1.3e-231 806.6 590 67.3
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 3.0e-231 805.4 585 68.4
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 3.3e-230 802.0 584 67.8
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 3.3e-230 802.0 589 66.9
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 4.3e-230 801.6 589 66.9
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 9.6e-230 800.4 535 72.0
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 8.1e-229 797.3 537 70.6
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 8.1e-229 797.3 585 67.4
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 1.1e-228 797.0 567 69.5
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 2.4e-228 795.8 590 66.8
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 6.8e-228 794.3 536 69.6
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 5.8e-227 791.2 584 66.3
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 5.8e-227 791.2 537 70.6
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 7.6e-227 790.8 587 66.8
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 1.1e-225 786.9 584 67.8
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 2.7e-224 782.3 608 63.5
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.3e-223 780.0 559 67.4
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 1.1e-222 776.9 584 65.9
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 1.9e-222 776.2 590 65.4
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 3.3e-222 775.4 536 69.6
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 5.6e-222 774.6 536 68.8
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 7.3e-222 774.2 590 65.1
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 7.3e-222 774.2 537 69.3
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 1.3e-221 773.5 588 64.6
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 2.1e-221 772.7 538 69.3
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 1.1e-220 770.4 586 65.5
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 9.0e-220 767.3 584 65.4
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 2.6e-219 765.8 583 64.3
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.3e-218 763.5 552 67.2
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 2.2e-218 762.7 583 64.5
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 6.4e-218 761.1 588 64.6
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 1.2e-216 756.9 588 64.6
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.3e-215 753.4 584 64.4
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 1.7e-215 753.1 588 64.3
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 3.9e-215 751.9 584 66.1
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 3.9e-215 751.9 588 63.4
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 5.1e-215 751.5 587 63.5
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 8.7e-215 750.7 588 63.9
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 8.7e-215 750.7 537 67.6
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 5.6e-214 748.0 588 64.1
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 5.6e-214 748.0 630 60.5
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 9.6e-214 747.3 584 64.0
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 2.8e-213 745.7 606 62.7
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 2.6e-211 739.2 582 62.7
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.7e-210 736.5 592 60.0
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 2.2e-210 736.1 588 63.1
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 2.4e-209 732.6 585 62.6
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 3.2e-209 732.3 589 62.0
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.3e-207 726.9 581 62.0
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 1.8e-207 726.5 537 65.0
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 1.1e-206 723.8 537 64.6
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 2.5e-206 722.6 514 68.3
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 4.3e-206 721.8 589 60.6
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 7.4e-206 721.1 537 64.2
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 6.2e-205 718.0 542 63.1
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 3.1e-204 715.7 586 59.7
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.5e-203 713.4 592 59.5
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 6.5e-202 708.0 463 73.4
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 1.4e-201 706.8 586 60.1
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 7.9e-200 701.0 570 61.9
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 5.1e-199 698.4 584 60.6
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 1.9e-198 696.4 633 55.5
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 3.7e-197 692.2 542 61.4
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 8.2e-197 691.0 536 61.8
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 4.5e-195 685.3 544 62.7
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 7.6e-195 684.5 460 71.1
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 5.0e-194 681.8 544 59.4
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 9.3e-193 677.6 636 54.9
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 1.0e-191 674.1 460 70.2
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 1.0e-183 647.5 460 67.2
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 3.7e-181 639.0 463 67.6
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 2.4e-180 636.3 506 62.5
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 6.9e-180 634.8 536 57.1
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 1.7e-178 630.2 462 64.7
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 4.1e-172 609.0 542 57.7
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 5.0e-170 602.1 511 61.4
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 2.2e-165 586.6 618 50.5
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 2.4e-164 583.2 462 63.2
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 9.1e-164 581.3 426 65.3
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 1.0e-159 567.8 533 56.1
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 2.8e-157 559.7 395 68.4
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 9.1e-156 554.7 538 50.6
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 1.0e-151 541.2 534 50.7
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 3.4e-150 536.2 545 51.6
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 7.3e-145 518.5 534 48.9
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 9.5e-145 518.1 351 72.1
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.7e-139 500.0 380 65.8
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 3.5e-139 499.6 555 46.7
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 6.0e-131 472.2 395 59.0
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 1.2e-126 458.0 480 49.4
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 6.0e-115 419.1 357 57.4
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 7.3e-113 412.1 536 42.9
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 4.2e-108 396.4 296 63.5
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 2.7e-107 393.7 268 69.8
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.6e-104 384.4 320 59.4
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 1.7e-98 364.4 239 74.1
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 2.4e-95 354.0 271 63.5
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 2.9e-93 347.1 684 36.4
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.1e-89 335.1 569 37.3
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 1.6e-88 331.3 510 39.8
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 3.0e-82 310.5 249 59.4
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.4e-71 275.0 450 36.7
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 9.4e-68 262.3 476 36.1
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 1.4e-66 258.5 212 61.8
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 5.7e-65 253.1 176 64.8
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 8.8e-58 229.2 141 76.6
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 3.5e-54 217.2 610 27.9
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 1.5e-49 201.8 397 36.0
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.6e-49 201.1 519 28.7
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 7.7e-46 189.5 124 68.5
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 5.0e-29 133.7 151 51.7
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 1.8e-26 125.2 97 56.7
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 2.0e-25 121.7 78 71.8
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 7.5e-25 119.8 561 26.0
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 4.1e-23 114.0 89 59.6
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.3e-20 104.0 113 46.9
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 6.2e-19 100.1 74 63.5
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 6.8e-18 96.7 110 43.6
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.2e-17 95.9 82 57.3
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 1.5e-17 95.5 54 72.2
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 4.9e-16 90.5 105 44.8
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 6.4e-16 90.1 140 37.9
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.1e-15 89.4 115 41.7
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 2.4e-15 88.2 56 71.4
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 5.4e-15 87.0 113 41.6
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 7.5e-09 66.6 43 72.1
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 7.5e-09 66.6 43 72.1
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 9.8e-09 66.2 55 54.5
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 1.4e-07 62.4 35 80.0
BolC8t50740H Brassica oleracea HOM05D035890 ORTHO05D033370 9.2e-07 59.7 43 62.8
Nn313s46297 Nelumbo nucifera HOM05D006097 ORTHO05D008538 2.7e-06 58.2 46 60.9


User provided reference genes

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