Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g30090 Coffea canephora HOM05D003334 ORTHO05D004076 2.9e-61 238.4 123 100.0
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 6.5e-29 131.0 78 80.8
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 6.5e-29 131.0 78 80.8
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 8.4e-29 130.6 78 80.8
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 8.4e-29 130.6 78 80.8
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 1.9e-28 129.4 78 78.2
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 2.5e-28 129.0 78 79.5
SGA_v2.0_scaffold269G46296 Striga asiatica HOM05D003334 ORTHO05D004076 3.2e-28 128.6 78 80.8
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 3.2e-28 128.6 78 80.8
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 4.2e-28 128.3 78 78.2
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 5.5e-28 127.9 78 78.2
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 5.5e-28 127.9 78 79.5
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 7.1e-28 127.5 78 78.2
Oeu063204.2 Olea europaea HOM05D003334 ORTHO05D004076 7.1e-28 127.5 78 78.2
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 9.3e-28 127.1 78 76.9
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 1.2e-27 126.7 78 76.9
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 1.2e-27 126.7 78 79.5
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 1.6e-27 126.3 78 76.9
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 2.1e-27 125.9 78 78.2
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 2.1e-27 125.9 78 75.6
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 2.1e-27 125.9 78 75.6
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 2.1e-27 125.9 77 76.6
Hund21749 Selenicereus undatus HOM05D003334 ORTHO05D004076 2.1e-27 125.9 78 76.9
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 2.7e-27 125.6 78 76.9
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 3.5e-27 125.2 78 76.9
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 4.6e-27 124.8 78 75.6
QL01p002104 Quercus lobata HOM05D003334 ORTHO05D004076 4.6e-27 124.8 77 75.3
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 4.6e-27 124.8 78 73.1
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 4.6e-27 124.8 78 73.1
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 4.6e-27 124.8 78 76.9
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 6.0e-27 124.4 78 75.6
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 6.0e-27 124.4 78 75.6
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 6.0e-27 124.4 78 75.6
C03p40970 Brassica napus HOM05D003334 ORTHO05D004076 6.0e-27 124.4 78 75.6
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 6.0e-27 124.4 78 75.6
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 6.0e-27 124.4 78 75.6
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 6.0e-27 124.4 78 75.6
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 6.0e-27 124.4 78 75.6
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 6.0e-27 124.4 78 75.6
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 7.9e-27 124.0 78 75.6
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 7.9e-27 124.0 78 75.6
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 7.9e-27 124.0 78 78.2
Sc06g0005190 Simmondsia chinensis HOM05D003334 ORTHO05D004076 7.9e-27 124.0 78 76.9
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 1.0e-26 123.6 78 75.6
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 1.0e-26 123.6 78 74.4
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 1.0e-26 123.6 76 76.3
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.0e-26 123.6 78 75.6
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 1.0e-26 123.6 78 74.4
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 1.3e-26 123.2 78 73.1
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 1.3e-26 123.2 78 76.9
BolC3t16362H Brassica oleracea HOM05D003334 ORTHO05D004076 1.8e-26 122.9 78 74.4
BolC3t16384H Brassica oleracea HOM05D003334 ORTHO05D004076 1.8e-26 122.9 78 74.4
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 2.3e-26 122.5 78 74.4
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 2.3e-26 122.5 78 74.4
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 2.3e-26 122.5 78 73.1
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 2.3e-26 122.5 78 74.4
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 3.0e-26 122.1 78 75.6
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 3.0e-26 122.1 78 74.4
CARHR078790 Cardamine hirsuta HOM05D003334 ORTHO05D004076 3.0e-26 122.1 78 73.1
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 3.0e-26 122.1 78 73.1
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 3.0e-26 122.1 78 71.8
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 3.0e-26 122.1 78 73.1
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 3.0e-26 122.1 78 74.4
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 3.9e-26 121.7 78 75.6
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 3.9e-26 121.7 78 73.1
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 3.9e-26 121.7 78 74.4
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 3.9e-26 121.7 78 74.4
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 6.7e-26 120.9 78 73.1
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 6.7e-26 120.9 78 74.4
AUR62009179 Chenopodium quinoa HOM05D003334 ORTHO05D004076 6.7e-26 120.9 78 71.8
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 6.7e-26 120.9 78 71.8
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 6.7e-26 120.9 78 74.4
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 6.7e-26 120.9 78 71.8
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 8.7e-26 120.6 78 73.1
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 8.7e-26 120.6 78 73.1
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 8.7e-26 120.6 78 73.1
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 8.7e-26 120.6 78 73.1
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 8.7e-26 120.6 78 73.1
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 1.1e-25 120.2 78 71.8
BolC3t16371H Brassica oleracea HOM05D003334 ORTHO05D004076 1.1e-25 120.2 78 73.1
BolC3t16373H Brassica oleracea HOM05D003334 ORTHO05D004076 1.1e-25 120.2 78 73.1
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 1.1e-25 120.2 78 73.1
Nitab4.5_0000288g0150 Nicotiana tabacum HOM05D003334 ORTHO05D004076 1.1e-25 120.2 78 74.4
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 1.1e-25 120.2 78 73.1
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 1.9e-25 119.4 78 71.8
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 1.9e-25 119.4 78 74.4
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 2.5e-25 119.0 78 71.8
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 2.5e-25 119.0 78 73.1
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 2.5e-25 119.0 78 71.8
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 2.5e-25 119.0 76 73.7
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 2.5e-25 119.0 78 71.8
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 3.3e-25 118.6 78 71.8
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 3.3e-25 118.6 78 70.5
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 3.3e-25 118.6 75 74.7
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 4.3e-25 118.2 79 73.4
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 4.3e-25 118.2 78 73.1
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 4.3e-25 118.2 78 73.1
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 4.3e-25 118.2 78 71.8
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 5.7e-25 117.9 76 72.4
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 7.4e-25 117.5 78 71.8
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 9.7e-25 117.1 78 71.8
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 1.6e-24 116.3 78 67.9
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 2.2e-24 115.9 78 70.5
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 2.2e-24 115.9 78 70.5
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 3.7e-24 115.2 78 71.8
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 3.7e-24 115.2 78 70.5
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 3.7e-24 115.2 76 71.1
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 4.8e-24 114.8 76 72.4
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 6.3e-24 114.4 76 71.1
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 8.2e-24 114.0 77 70.1
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 8.2e-24 114.0 78 70.5
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 6.9e-23 110.9 78 66.7
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 9.0e-23 110.5 78 67.9
ECA233G4312 Erigeron canadensis HOM05D003334 ORTHO05D004076 1.2e-22 110.2 76 68.4
Peaxi162Scf00213g01416 Petunia axillaris HOM05D003334 ORTHO05D004076 1.2e-22 110.2 94 61.7
BolC7t40804H Brassica oleracea HOM05D003334 ORTHO05D004076 1.5e-22 109.8 78 67.9
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 1.5e-22 109.8 78 69.2
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 2.0e-22 109.4 77 68.8
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 3.4e-22 108.6 77 66.2
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 3.4e-22 108.6 78 64.1
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 4.5e-22 108.2 85 65.9
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 4.5e-22 108.2 76 67.1
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 5.9e-22 107.8 78 65.4
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 7.6e-22 107.5 76 65.8
Sabra04G0133700 Salix brachista HOM05D003334 ORTHO05D004076 1.7e-21 106.3 78 65.4
AagrBONN_evm.TU.Sc2ySwM_228.5148 Anthoceros agrestis HOM05D003334 ORTHO05D004076 5.0e-21 104.8 78 64.1
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 5.5e-20 101.3 72 63.9
BcaC09g47814 Brassica carinata HOM05D003334 ORTHO05D004076 5.5e-20 101.3 70 65.7
BolC1t05722H Brassica oleracea HOM05D003334 ORTHO05D004076 5.5e-20 101.3 70 65.7
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 7.2e-20 100.9 76 63.2
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 9.3e-20 100.5 78 62.8
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.6e-19 99.8 78 64.1
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 4.6e-19 98.2 64 71.9
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 1.4e-18 96.7 61 72.1
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 1.8e-18 96.3 66 69.7
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 3.0e-18 95.5 72 58.3
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 5.1e-18 94.7 62 72.6
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 6.7e-18 94.4 61 72.1
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 1.1e-17 93.6 61 70.5
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 2.5e-17 92.4 76 57.9
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 3.3e-17 92.0 71 59.2
SEGI_09752 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 3.3e-17 92.0 61 70.5
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 5.7e-17 91.3 67 61.2
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 9.7e-17 90.5 61 70.5
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 1.7e-16 89.7 62 67.7
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 4.8e-16 88.2 63 68.3
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 1.4e-15 86.7 62 66.1
TPR.G21208 Trifolium pratense HOM05D003334 ORTHO05D004076 4.1e-15 85.1 63 61.9
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 5.3e-15 84.7 60 61.7
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 5.3e-15 84.7 60 61.7
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.3e-13 80.1 64 65.6
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 3.8e-13 78.6 61 57.4
Hma1.2p1_1064F.1_g253620 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 1.4e-12 76.6 51 70.6
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 2.1e-11 72.8 54 66.7
Nitab4.5_0009273g0020 Nicotiana tabacum HOM05D003334 ORTHO05D004076 6.1e-11 71.2 48 72.9
RcHm_v2.0_Chr7g0219201 Rosa chinensis HOM05D003334 ORTHO05D004076 6.1e-11 71.2 49 71.4
Haze_26816 Corylus avellana HOM05D003334 ORTHO05D004076 1.1e-09 67.0 72 45.8
MCO14G308 Micromonas commoda HOM05D003334 ORTHO05D004076 1.5e-09 66.6 71 43.7
QL12p030357 Quercus lobata HOM05D003334 ORTHO05D004076 3.3e-09 65.5 48 58.3
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 4.4e-09 65.1 38 76.3
SMO115G0240 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 3.4e-06 55.5 62 37.1
Nitab4.5_0006136g0030 Nicotiana tabacum HOM05D000111 ORTHO05D001334 4.5e-06 55.1 37 67.6


User provided reference genes

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