Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 4.8e-191 671.0 340 100.0
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 6.0e-133 478.0 341 71.3
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.7e-132 476.5 337 72.1
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.7e-132 476.5 341 71.3
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 3.0e-132 475.7 341 71.0
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 3.0e-132 475.7 341 70.7
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.5e-131 472.6 335 70.7
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.8e-130 469.2 341 71.0
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 3.6e-130 468.8 343 70.0
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 3.6e-130 468.8 343 70.0
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 9.8e-128 460.7 341 71.0
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.6e-125 453.4 341 69.8
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 2.7e-125 452.6 318 71.1
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 2.7e-125 452.6 319 69.0
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.3e-124 450.3 336 69.6
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 1.3e-124 450.3 319 70.8
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 1.1e-123 447.2 335 67.2
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 4.3e-123 445.3 339 67.0
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 4.3e-123 445.3 336 67.6
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 1.2e-122 443.7 338 66.6
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 2.8e-122 442.6 331 68.0
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 8.1e-122 441.0 335 66.9
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 2.0e-120 436.4 326 66.9
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.3e-119 433.7 347 64.6
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 2.2e-119 433.0 341 64.8
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 2.9e-119 432.6 323 68.4
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 4.9e-119 431.8 342 64.6
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 1.1e-118 430.6 331 64.7
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 2.4e-118 429.5 343 65.0
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 2.1e-117 426.4 336 63.4
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 2.1e-117 426.4 335 63.6
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 2.1e-117 426.4 331 65.0
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 2.7e-117 426.0 348 62.9
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.7e-117 426.0 322 67.1
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 4.6e-117 425.2 332 65.7
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 6.0e-117 424.9 335 61.8
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 6.0e-117 424.9 337 61.7
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 7.8e-117 424.5 330 65.8
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 7.8e-117 424.5 335 65.1
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 1.3e-116 423.7 334 64.1
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 1.3e-116 423.7 332 65.4
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 3.0e-116 422.5 339 65.2
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.0e-116 422.5 332 65.7
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 3.9e-116 422.2 337 62.9
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 5.1e-116 421.8 335 65.1
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 5.1e-116 421.8 331 63.7
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 8.6e-116 421.0 336 61.9
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 4.3e-115 418.7 331 64.0
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 5.6e-115 418.3 322 65.8
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 5.6e-115 418.3 334 62.6
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 9.6e-115 417.5 345 61.2
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 9.6e-115 417.5 331 65.0
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 2.8e-114 416.0 336 63.1
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 3.6e-114 415.6 341 62.8
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 4.7e-114 415.2 318 62.9
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 6.2e-114 414.8 326 63.8
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 2.4e-113 412.9 330 62.7
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 6.8e-113 411.4 318 62.9
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 6.8e-113 411.4 334 62.0
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 8.9e-113 411.0 325 64.0
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 1.2e-112 410.6 347 60.5
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 1.5e-112 410.2 347 60.5
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 2.0e-112 409.8 347 60.5
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 3.4e-112 409.1 334 62.6
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 4.4e-112 408.7 318 63.2
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 5.8e-112 408.3 334 62.3
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 9.9e-112 407.5 334 61.7
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 9.9e-112 407.5 331 61.0
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 1.3e-111 407.1 325 64.0
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 2.2e-111 406.4 334 62.0
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 2.2e-111 406.4 331 62.8
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 2.2e-111 406.4 331 62.8
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 2.9e-111 406.0 334 62.6
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 2.9e-111 406.0 325 62.8
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 3.8e-111 405.6 333 61.9
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 6.4e-111 404.8 334 61.4
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 6.4e-111 404.8 334 62.3
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 8.4e-111 404.4 333 62.2
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 8.4e-111 404.4 329 61.4
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.1e-110 404.1 329 61.4
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.1e-110 404.1 329 61.4
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 1.4e-110 403.7 324 63.3
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 1.4e-110 403.7 347 60.2
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 2.4e-110 402.9 329 61.1
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.4e-110 402.9 329 61.1
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 4.2e-110 402.1 347 58.8
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 5.4e-110 401.7 263 76.0
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 9.3e-110 401.0 329 60.8
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 2.1e-109 399.8 336 60.4
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 2.7e-109 399.4 336 60.7
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 2.7e-109 399.4 323 61.9
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 4.6e-109 398.7 333 60.7
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 8.7e-108 394.4 376 55.9
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 1.1e-107 394.0 339 60.2
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 3.3e-107 392.5 322 63.4
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 8.1e-106 387.9 326 61.7
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 2.4e-105 386.3 328 59.1
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 4.0e-105 385.6 318 60.1
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.5e-104 383.6 315 60.3
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 4.4e-104 382.1 320 59.4
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 7.6e-104 381.3 323 58.2
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 2.9e-103 379.4 334 56.6
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 4.9e-103 378.6 336 59.2
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 4.9e-103 378.6 327 57.5
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 1.2e-101 374.0 324 63.0
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 1.6e-101 373.6 323 57.9
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.9e-99 366.7 334 58.7
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 4.3e-99 365.5 319 58.9
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 1.7e-95 353.6 289 62.3
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.7e-93 346.3 254 68.9
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 7.4e-83 311.6 322 48.4
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 7.6e-80 301.6 332 47.0
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 5.0e-79 298.9 341 44.3
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 4.1e-73 279.3 340 43.8
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 1.1e-59 234.6 226 56.2
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 7.4e-59 231.9 176 63.6
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.3e-58 231.1 176 63.6
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.2e-58 230.3 180 65.0
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 4.8e-58 229.2 319 42.0
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 1.4e-57 227.6 239 51.9
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 9.4e-54 214.9 159 66.7
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 2.0e-48 197.2 147 67.3
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 7.2e-46 188.7 135 67.4
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 3.0e-44 183.3 328 33.8
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 9.8e-43 178.3 136 67.6
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 8.0e-37 158.7 99 78.8
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.8e-36 157.5 128 61.7
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 5.7e-35 152.5 107 66.4
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 1.7e-34 151.0 112 69.6
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 1.1e-33 148.3 97 75.3
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 4.1e-33 146.4 104 69.2
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 5.4e-33 146.0 123 59.3
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 7.0e-33 145.6 184 44.6
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 7.0e-33 145.6 97 73.2
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 1.7e-31 141.0 120 59.2
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 1.1e-30 138.3 267 32.2
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.9e-30 137.5 103 62.1
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 4.3e-30 136.3 342 31.0
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 4.3e-30 136.3 203 43.8
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 2.1e-29 134.0 176 43.2
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 7.5e-27 125.6 152 40.8
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 4.1e-25 119.8 83 71.1
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 4.1e-25 119.8 83 71.1
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 1.6e-24 117.9 172 39.0
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 4.7e-21 106.3 138 47.8
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.3e-18 98.2 124 49.2
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 7.0e-17 92.4 132 44.7
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 1.3e-15 88.2 115 40.0
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 6.6e-15 85.9 124 44.4
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 5.8e-11 72.8 101 41.6
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 2.9e-10 70.5 42 78.6
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 3.5e-08 63.5 54 57.4
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.0e-07 62.0 59 55.9
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 3.0e-07 60.5 40 67.5
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 3.0e-07 60.5 145 33.8


User provided reference genes

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