Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 1.6e-115 419.5 215 100.0
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 3.6e-59 232.3 187 69.0
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 2.3e-58 229.6 205 65.9
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 4.0e-58 228.8 207 65.7
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 6.8e-58 228.0 201 67.7
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 6.8e-58 228.0 201 67.7
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 1.2e-57 227.3 203 65.5
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 2.0e-57 226.5 144 80.6
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 2.0e-57 226.5 144 80.6
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 2.6e-57 226.1 202 66.3
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 5.7e-57 224.9 144 81.2
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 1.7e-56 223.4 130 86.2
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 1.7e-56 223.4 170 70.6
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 2.2e-56 223.0 202 64.9
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 2.2e-56 223.0 203 63.1
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 2.9e-56 222.6 174 70.1
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 3.7e-56 222.2 130 84.6
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 4.9e-56 221.9 195 66.7
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 4.9e-56 221.9 206 64.1
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 6.4e-56 221.5 141 83.0
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 8.3e-56 221.1 167 72.5
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 1.1e-55 220.7 146 78.8
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 1.4e-55 220.3 203 64.0
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 1.8e-55 219.9 160 75.6
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 2.4e-55 219.5 144 79.2
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 2.4e-55 219.5 133 83.5
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 3.2e-55 219.2 143 79.0
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 4.1e-55 218.8 136 81.6
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 5.4e-55 218.4 200 64.0
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 5.4e-55 218.4 135 83.7
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 5.4e-55 218.4 205 65.9
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 9.2e-55 217.6 178 68.0
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 9.2e-55 217.6 117 92.3
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 1.2e-54 217.2 136 82.4
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 1.2e-54 217.2 203 68.0
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 1.6e-54 216.9 152 75.7
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 2.0e-54 216.5 189 66.7
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 2.7e-54 216.1 199 62.3
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 2.7e-54 216.1 109 98.2
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 2.7e-54 216.1 148 79.1
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 3.5e-54 215.7 135 81.5
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 3.5e-54 215.7 136 82.4
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 4.6e-54 215.3 200 62.0
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 4.6e-54 215.3 202 66.3
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 4.6e-54 215.3 137 81.0
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 5.9e-54 214.9 201 66.7
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 7.8e-54 214.5 203 64.5
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 1.0e-53 214.2 139 80.6
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 1.3e-53 213.8 163 69.9
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 1.3e-53 213.8 112 93.8
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 1.3e-53 213.8 187 67.4
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.7e-53 213.4 136 81.6
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 1.7e-53 213.4 123 87.0
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 2.3e-53 213.0 150 75.3
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 2.3e-53 213.0 170 70.0
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 2.3e-53 213.0 128 84.4
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 3.0e-53 212.6 120 86.7
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 3.0e-53 212.6 125 84.0
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 3.9e-53 212.2 111 93.7
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 3.9e-53 212.2 157 72.6
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 5.0e-53 211.8 205 63.9
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 1.1e-52 210.7 202 61.4
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 1.1e-52 210.7 159 73.0
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 1.1e-52 210.7 152 71.7
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 1.1e-52 210.7 134 78.4
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 1.5e-52 210.3 179 64.2
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 1.9e-52 209.9 111 91.9
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 2.5e-52 209.5 150 75.3
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 4.3e-52 208.8 189 64.6
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 4.3e-52 208.8 111 92.8
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 5.6e-52 208.4 146 76.0
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 7.3e-52 208.0 150 74.7
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 7.3e-52 208.0 133 78.9
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 7.3e-52 208.0 183 64.5
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 1.2e-51 207.2 177 63.8
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 1.6e-51 206.8 201 61.2
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 2.8e-51 206.1 183 63.4
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 3.6e-51 205.7 154 70.8
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 3.6e-51 205.7 154 70.8
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 3.6e-51 205.7 150 74.0
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 3.6e-51 205.7 111 91.9
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 6.2e-51 204.9 112 87.5
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 6.2e-51 204.9 152 72.4
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 6.2e-51 204.9 109 92.7
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 2.3e-50 203.0 139 74.8
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 4.0e-50 202.2 112 89.3
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 4.0e-50 202.2 203 61.6
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 4.0e-50 202.2 109 91.7
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 8.9e-50 201.1 155 70.3
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 1.2e-49 200.7 187 61.0
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 2.0e-49 199.9 113 85.0
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 5.8e-49 198.4 112 84.8
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.2e-46 190.7 125 75.2
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 1.6e-46 190.3 155 67.7
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 6.6e-45 184.9 140 69.3
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 2.1e-43 179.9 266 46.6
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 6.8e-42 174.9 177 61.0
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 6.6e-37 158.3 166 63.3
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.9e-36 156.8 84 90.5
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 4.7e-35 152.1 156 60.9
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 4.0e-34 149.1 104 78.8
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 5.8e-33 145.2 86 79.1
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 9.9e-33 144.4 91 78.0
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 4.3e-28 129.0 69 89.9
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 1.2e-25 120.9 109 54.1
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 1.2e-25 120.9 71 81.7
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.2e-22 110.9 98 55.1
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 2.3e-21 106.7 110 50.9
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 3.0e-21 106.3 130 43.8
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 1.5e-17 94.0 107 44.9
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 7.1e-15 85.1 73 63.0
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.5e-09 67.4 107 42.1


User provided reference genes

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