Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 1.3e-32 142.5 74 100.0
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 7.3e-20 100.1 63 87.3
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 6.2e-19 97.1 63 81.0
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 4.9e-16 87.4 63 74.6
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 4.9e-16 87.4 63 73.0
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 6.4e-16 87.0 63 74.6
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 2.4e-15 85.1 63 69.8
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 3.2e-15 84.7 63 69.8
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 3.2e-15 84.7 63 71.4
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 5.4e-15 84.0 65 72.3
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 7.1e-15 83.6 62 74.2
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 7.1e-15 83.6 63 69.8
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 7.1e-15 83.6 62 71.0
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 9.3e-15 83.2 63 71.4
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.2e-14 82.8 63 71.4
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.2e-14 82.8 63 71.4
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.2e-14 82.8 62 71.0
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 1.6e-14 82.4 62 72.6
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.6e-14 82.4 63 71.4
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 1.6e-14 82.4 63 71.4
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.6e-14 82.4 62 74.2
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 2.1e-14 82.0 63 69.8
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.1e-14 82.0 63 69.8
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.1e-14 82.0 63 69.8
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 2.7e-14 81.6 61 72.1
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 3.5e-14 81.3 65 70.8
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 3.5e-14 81.3 62 69.4
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 3.5e-14 81.3 62 72.6
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 6.0e-14 80.5 63 68.3
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 6.0e-14 80.5 63 68.3
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 7.9e-14 80.1 63 69.8
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 7.9e-14 80.1 62 67.7
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 7.9e-14 80.1 63 68.3
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 7.9e-14 80.1 62 71.0
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.0e-13 79.7 63 69.8
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 1.0e-13 79.7 63 68.3
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 1.0e-13 79.7 62 67.7
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 1.3e-13 79.3 63 66.7
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.3e-13 79.3 62 71.0
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 1.8e-13 79.0 58 69.0
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.3e-13 78.6 62 67.7
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 2.3e-13 78.6 63 63.5
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.3e-13 78.6 63 63.5
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.3e-13 78.6 63 63.5
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 2.3e-13 78.6 63 63.5
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 3.0e-13 78.2 63 63.5
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 3.0e-13 78.2 62 71.0
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 5.1e-13 77.4 62 69.4
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 5.1e-13 77.4 62 66.1
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 5.1e-13 77.4 63 63.5
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 6.7e-13 77.0 59 67.8
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 6.7e-13 77.0 58 67.2
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 8.7e-13 76.6 58 70.7
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.7e-13 76.6 58 75.9
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 8.7e-13 76.6 63 66.7
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 8.7e-13 76.6 58 67.2
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 8.7e-13 76.6 62 61.3
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 8.7e-13 76.6 58 67.2
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 1.5e-12 75.9 63 60.3
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 1.5e-12 75.9 62 62.9
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 1.9e-12 75.5 63 66.7
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 2.5e-12 75.1 63 65.1
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 2.5e-12 75.1 58 65.5
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 3.3e-12 74.7 62 62.9
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 3.3e-12 74.7 58 70.7
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 4.3e-12 74.3 58 63.8
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 5.6e-12 73.9 58 65.5
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 5.6e-12 73.9 58 65.5
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 5.6e-12 73.9 58 65.5
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 5.6e-12 73.9 63 71.4
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 5.6e-12 73.9 60 65.0
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 7.4e-12 73.6 63 71.4
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 7.4e-12 73.6 58 69.0
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 7.4e-12 73.6 58 62.1
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 7.4e-12 73.6 58 65.5
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 1.3e-11 72.8 63 66.7
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.1e-11 72.0 55 65.5
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 2.1e-11 72.0 55 65.5
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 2.1e-11 72.0 58 65.5
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.7e-11 71.2 63 63.5
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 6.2e-11 70.5 63 60.3
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 6.2e-11 70.5 62 61.3
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 6.2e-11 70.5 62 61.3
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 8.1e-11 70.1 58 65.5
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 8.1e-11 70.1 63 63.5
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.1e-10 69.7 54 64.8
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.4e-10 69.3 58 67.2
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 1.8e-10 68.9 58 62.1
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 9.0e-10 66.6 55 65.5
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 9.0e-10 66.6 55 65.5
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.5e-09 65.9 55 65.5
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 1.5e-09 65.9 55 65.5
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 1.5e-09 65.9 55 65.5
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 1.5e-09 65.9 62 61.3
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 2.6e-09 65.1 58 60.3
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 2.6e-09 65.1 55 63.6
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 2.6e-09 65.1 48 70.8
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 2.6e-09 65.1 66 53.0
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.4e-09 64.7 62 62.9
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 3.4e-09 64.7 55 65.5
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 5.8e-09 63.9 69 56.5
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 7.6e-09 63.5 72 51.4
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 7.6e-09 63.5 58 58.6
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 7.6e-09 63.5 58 55.2
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 7.6e-09 63.5 63 57.1
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.0e-08 63.2 61 62.3
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.3e-08 62.8 55 61.8
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.3e-08 62.8 55 61.8
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 1.7e-08 62.4 55 61.8
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 2.2e-08 62.0 63 58.7
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.2e-08 62.0 73 53.4
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 3.8e-08 61.2 64 56.2
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 4.9e-08 60.8 55 60.0
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.9e-08 60.8 60 61.7
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 8.4e-08 60.1 55 60.0
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.1e-07 59.7 61 60.7
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 9.3e-07 56.6 57 57.9
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.7e-06 55.1 57 59.6


User provided reference genes

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