Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 6.9e-96 354.0 181 100.0
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 2.2e-86 322.4 179 91.6
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.6e-74 282.3 176 80.7
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 3.3e-74 282.0 177 80.8
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 5.7e-74 281.2 176 78.4
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 5.7e-74 281.2 175 78.9
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.3e-73 280.0 175 77.7
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.2e-73 279.3 175 78.9
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 8.2e-73 277.3 175 77.7
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.1e-72 276.9 181 78.5
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.8e-72 276.2 176 79.0
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.8e-72 276.2 176 81.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 2.4e-72 275.8 176 81.8
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 3.1e-72 275.4 176 81.2
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 5.3e-72 274.6 178 78.7
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 7.0e-72 274.2 176 80.7
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 9.1e-72 273.9 176 80.7
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 9.1e-72 273.9 176 80.7
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 1.2e-71 273.5 177 82.5
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.0e-70 270.4 186 74.7
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 1.3e-70 270.0 176 80.1
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 1.7e-70 269.6 175 76.6
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 1.7e-70 269.6 175 76.6
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.7e-70 269.6 186 74.7
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 3.8e-70 268.5 183 76.0
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.0e-70 268.1 176 77.8
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.5e-70 267.7 176 79.5
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 6.5e-70 267.7 176 76.7
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 6.5e-70 267.7 176 76.7
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 6.5e-70 267.7 186 74.7
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 6.5e-70 267.7 186 74.7
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.1e-69 266.9 176 79.5
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 1.4e-69 266.5 186 74.2
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.4e-69 266.5 176 76.1
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.4e-69 266.5 177 79.7
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 1.9e-69 266.2 176 79.5
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 3.2e-69 265.4 176 75.6
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.2e-69 265.0 176 76.1
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 4.2e-69 265.0 186 74.2
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 7.2e-69 264.2 169 80.5
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 9.4e-69 263.8 184 74.5
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 9.4e-69 263.8 180 77.2
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.6e-68 263.1 164 81.1
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.6e-68 263.1 175 76.0
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 3.6e-68 261.9 176 76.7
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 3.6e-68 261.9 183 73.8
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.0e-67 260.4 174 74.7
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.0e-67 260.4 176 78.4
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.4e-67 260.0 176 76.7
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.8e-67 259.6 176 73.9
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 1.8e-67 259.6 181 74.0
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 3.0e-67 258.8 194 71.6
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 3.9e-67 258.5 176 76.1
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 5.2e-67 258.1 180 73.9
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 5.2e-67 258.1 176 75.6
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 6.7e-67 257.7 172 76.7
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.7e-67 257.7 176 75.0
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 8.8e-67 257.3 172 76.7
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 8.8e-67 257.3 172 76.7
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.5e-66 256.5 178 72.5
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 2.0e-66 256.1 172 76.2
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 2.0e-66 256.1 172 76.2
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.0e-66 256.1 169 77.5
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 2.6e-66 255.8 169 77.5
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.6e-66 255.8 169 77.5
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 3.3e-66 255.4 175 73.7
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 4.4e-66 255.0 180 77.2
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 5.7e-66 254.6 177 75.7
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 5.7e-66 254.6 182 75.3
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.7e-66 254.6 172 76.2
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 7.4e-66 254.2 181 74.0
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.7e-65 253.1 179 73.7
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.7e-65 253.1 169 76.9
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.2e-65 252.7 168 73.8
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 2.2e-65 252.7 180 72.8
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.2e-65 252.7 176 74.4
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.8e-65 252.3 180 73.9
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.8e-65 252.3 180 73.9
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 2.8e-65 252.3 168 77.4
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 4.8e-65 251.5 176 74.4
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 4.8e-65 251.5 177 75.1
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 8.2e-65 250.8 181 72.9
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.4e-64 250.0 174 76.4
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 1.8e-64 249.6 179 70.9
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 4.1e-64 248.4 168 73.2
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 5.3e-64 248.1 165 77.0
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 7.0e-64 247.7 175 73.1
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 9.1e-64 247.3 176 72.2
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 1.2e-63 246.9 172 71.5
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.2e-63 246.9 174 75.3
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 2.0e-63 246.1 183 71.6
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 2.0e-63 246.1 183 71.6
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 2.0e-63 246.1 181 70.7
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 2.6e-63 245.7 189 70.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.6e-63 245.7 176 75.6
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 3.5e-63 245.4 175 74.3
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.3e-62 243.4 172 72.1
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.7e-62 243.0 175 73.7
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 6.5e-62 241.1 181 71.8
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.1e-61 240.4 175 70.3
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 1.5e-61 240.0 178 69.7
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.5e-61 240.0 175 73.7
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.9e-61 239.6 181 71.3
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 2.1e-60 236.1 136 84.6
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 2.7e-60 235.7 181 71.3
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 3.6e-60 235.3 136 85.3
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 6.1e-60 234.6 181 70.7
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 5.2e-59 231.5 175 66.3
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 5.2e-59 231.5 181 70.7
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 8.8e-59 230.7 175 70.3
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 8.8e-59 230.7 181 68.5
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 1.2e-58 230.3 176 69.9
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 4.4e-58 228.4 178 66.9
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 5.7e-58 228.0 168 69.6
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 7.5e-58 227.6 127 85.8
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 9.7e-58 227.3 158 72.2
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.3e-57 226.9 173 69.9
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.7e-57 226.5 255 52.2
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 2.2e-57 226.1 176 68.2
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 2.8e-57 225.7 175 66.9
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 3.7e-57 225.3 180 67.8
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 6.3e-57 224.6 176 68.8
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.8e-56 223.0 154 74.7
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 4.1e-56 221.9 176 67.6
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 3.5e-55 218.8 145 74.5
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 7.7e-55 217.6 154 74.7
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 5.0e-54 214.9 171 65.5
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 2.5e-53 212.6 181 64.6
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 9.4e-53 210.7 174 63.8
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 3.6e-52 208.8 119 90.8
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 8.0e-52 207.6 172 65.1
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 6.3e-49 198.0 118 80.5
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.5e-47 191.8 176 61.4
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 7.7e-47 191.0 179 57.0
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 7.2e-45 184.5 186 57.5
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 2.8e-44 182.6 151 64.2
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.0e-43 180.6 177 55.9
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.5e-42 176.8 206 49.0
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 2.0e-42 176.4 182 51.6
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 5.7e-42 174.9 143 59.4
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.2e-36 157.1 179 48.6
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 8.0e-36 154.5 86 83.7
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.7e-33 146.7 131 58.8
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.2e-33 146.4 83 83.1
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.9e-33 146.0 83 81.9
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.7e-33 145.6 174 47.7
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 5.4e-32 141.7 89 77.5
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 2.7e-31 139.4 122 64.8
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.5e-29 132.9 138 57.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.6e-28 129.0 104 68.3
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 4.1e-24 115.5 130 43.8
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 4.1e-24 115.5 92 68.5
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 6.0e-23 111.7 130 47.7
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 8.6e-22 107.8 100 61.0
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 8.6e-22 107.8 100 61.0
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 2.1e-20 103.2 105 45.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 7.5e-18 94.7 159 36.5
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.9e-17 92.8 86 59.3
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.0e-14 84.3 43 88.4
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 2.5e-13 79.7 80 52.5
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 3.6e-12 75.9 80 56.2
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 3.1e-11 72.8 65 58.5
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 4.4e-10 68.9 85 47.1
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 5.8e-10 68.6 90 36.7
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 9.3e-08 61.2 139 36.0
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 2.1e-07 60.1 131 41.2


User provided reference genes

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