Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 0.0e+00 1354.3 701 100.0
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 1.0e-179 634.4 706 51.3
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 3.6e-177 625.9 700 51.3
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 4.9e-174 615.5 701 50.8
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 7.1e-173 611.7 706 49.4
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 1.0e-171 607.8 706 50.0
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 2.4e-168 596.7 689 49.5
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 9.0e-168 594.7 713 49.2
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 4.8e-161 572.4 708 50.1
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 1.9e-157 560.5 707 48.1
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 4.2e-157 559.3 706 48.3
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 8.2e-153 545.0 705 46.1
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 1.1e-152 544.7 704 48.7
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 2.9e-150 536.6 639 48.5
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 8.2e-145 518.5 714 45.4
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 2.7e-140 503.4 705 45.5
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 1.5e-138 497.7 706 44.9
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 1.7e-134 484.2 706 44.5
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 5.0e-134 482.6 705 44.3
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 3.6e-132 476.5 709 44.3
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 8.8e-131 471.9 705 43.3
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 8.2e-129 465.3 707 42.9
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 4.1e-128 463.0 710 44.5
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 4.5e-127 459.5 707 42.7
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 1.0e-126 458.4 707 42.6
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 6.8e-123 445.7 712 40.9
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 1.2e-122 444.9 717 43.1
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 5.5e-117 426.0 702 39.6
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 1.2e-116 424.9 717 41.6
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 2.1e-116 424.1 702 39.6
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 1.5e-114 417.9 685 40.6
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 2.7e-111 407.1 709 40.2
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 1.9e-109 401.0 686 38.9
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 3.3e-109 400.2 691 40.5
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 8.9e-107 392.1 709 38.8
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 3.4e-106 390.2 707 39.5
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 7.3e-101 372.5 704 38.9
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 1.6e-100 371.3 724 36.9
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 1.8e-99 367.9 691 38.5
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 4.0e-99 366.7 495 47.5
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 4.4e-98 363.2 688 37.8
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 5.8e-98 362.8 313 61.7
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 7.5e-98 362.5 707 36.2
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 9.8e-98 362.1 749 35.5
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 8.3e-97 359.0 688 37.5
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.9e-96 357.8 720 38.3
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 2.7e-95 354.0 688 36.6
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 6.0e-95 352.8 711 38.0
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 1.0e-94 352.1 704 36.6
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 1.7e-94 351.3 756 36.4
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.7e-94 351.3 448 48.7
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 5.0e-94 349.7 696 37.2
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 8.6e-94 349.0 709 36.1
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 1.2e-92 345.1 688 38.4
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 8.1e-92 342.4 694 36.7
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 1.8e-91 341.3 708 36.3
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 7.5e-90 335.9 692 34.8
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 2.2e-89 334.3 678 36.1
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 4.9e-89 333.2 720 35.4
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 1.4e-88 331.6 690 36.8
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 2.4e-88 330.9 694 37.5
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 3.2e-88 330.5 692 37.3
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 1.6e-87 328.2 518 41.7
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 4.6e-87 326.6 483 45.3
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 7.8e-87 325.9 694 37.5
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 6.6e-86 322.8 687 36.4
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 2.5e-85 320.9 656 36.3
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 3.3e-85 320.5 686 36.0
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 3.6e-84 317.0 641 38.1
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 5.8e-82 309.7 528 40.7
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 2.4e-80 304.3 632 38.1
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 9.2e-80 302.4 691 35.2
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 3.0e-78 297.4 589 36.8
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 8.6e-78 295.8 370 48.9
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 1.5e-77 295.0 694 34.6
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 4.3e-77 293.5 701 34.0
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 2.8e-76 290.8 705 34.2
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 3.4e-74 283.9 725 33.1
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 1.1e-72 278.9 688 33.7
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 5.1e-70 270.0 711 32.5
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 4.8e-68 263.5 692 33.2
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 1.1e-67 262.3 692 33.1
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.1e-67 262.3 704 32.8
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.4e-67 261.2 422 41.0
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 4.0e-67 260.4 703 32.0
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 4.0e-67 260.4 703 32.0
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 2.0e-66 258.1 690 32.0
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 1.3e-65 255.4 727 30.8
MSTRG.5009 Avicennia marina HOM05D006280 ORTHO05D007876 6.4e-65 253.1 370 44.9
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 8.4e-65 252.7 718 33.3
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.6e-63 248.4 265 52.5
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 2.7e-63 247.7 320 46.2
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 3.9e-62 243.8 358 42.5
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 5.6e-61 240.0 722 29.9
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 1.4e-59 235.3 512 36.5
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 4.0e-59 233.8 245 55.9
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 2.0e-58 231.5 315 46.0
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 5.8e-58 229.9 411 41.1
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 3.2e-56 224.2 463 37.8
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 9.3e-56 222.6 694 28.4
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 6.7e-54 216.5 427 38.4
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 1.5e-53 215.3 498 34.5
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 1.5e-53 215.3 416 38.2
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 2.0e-50 204.9 208 53.8
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 3.4e-50 204.1 483 35.4
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 2.2e-49 201.4 726 31.0
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 2.2e-49 201.4 305 42.3
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 3.8e-49 200.7 432 36.6
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 1.5e-45 188.7 128 71.1
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 9.6e-45 186.0 403 36.5
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.2e-39 169.1 198 50.0
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 1.6e-39 168.7 119 68.9
DCAR_006240 Daucus carota HOM05D006280 ORTHO05D007876 7.7e-34 149.8 226 45.6
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.2e-31 142.5 342 33.9
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 3.3e-29 134.4 172 47.1
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 9.7e-29 132.9 766 24.5
Manes.07G004300 Manihot esculenta HOM05D006280 ORTHO05D007876 2.0e-26 125.2 363 30.6
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 6.1e-23 113.6 349 29.8
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 5.1e-22 110.5 297 32.3
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 5.7e-21 107.1 80 62.5
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 2.8e-20 104.8 302 30.1
THA.LOC109117177 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 3.6e-15 87.8 220 33.6
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 3.0e-14 84.7 456 25.4
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 1.1e-13 82.8 172 32.0
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 7.0e-11 73.6 331 26.3
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 1.7e-09 68.9 78 43.6


User provided reference genes

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