Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 6.4e-244 847.0 444 100.0
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 2.4e-166 589.3 460 70.7
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 5.3e-166 588.2 501 66.9
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 5.9e-165 584.7 447 72.0
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 3.8e-164 582.0 446 71.1
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 6.5e-164 581.3 444 70.3
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 8.5e-164 580.9 444 70.3
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 3.2e-163 578.9 454 70.9
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 4.2e-163 578.6 446 70.9
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.2e-162 577.0 470 67.7
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 4.7e-162 575.1 445 70.1
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 3.0e-161 572.4 445 70.3
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 4.0e-161 572.0 446 70.6
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.0e-161 572.0 445 71.5
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 8.8e-161 570.9 445 69.7
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 8.8e-161 570.9 445 70.8
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.2e-160 570.5 445 71.5
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.2e-160 570.5 445 71.5
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.3e-160 568.9 445 70.8
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 9.7e-160 567.4 445 69.9
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 1.3e-159 567.0 445 70.6
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 1.3e-159 567.0 444 70.3
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 3.7e-159 565.5 447 69.8
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.8e-159 565.1 445 71.0
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 4.8e-159 565.1 450 70.2
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 6.3e-159 564.7 448 69.6
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.3e-159 564.7 444 69.1
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.1e-158 563.9 445 71.2
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 1.1e-158 563.9 445 69.2
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.4e-158 563.5 445 70.8
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.4e-158 562.8 446 68.6
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 4.1e-158 562.0 447 69.4
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 4.1e-158 562.0 444 70.3
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 7.0e-158 561.2 444 68.9
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.6e-157 560.1 447 70.5
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 3.5e-157 558.9 447 70.2
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 1.9e-155 553.1 450 68.9
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 5.5e-155 551.6 445 68.8
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 5.5e-155 551.6 446 68.6
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-154 549.7 435 69.4
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 4.7e-154 548.5 444 66.7
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.4e-153 547.0 451 67.8
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 2.3e-153 546.2 444 67.6
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.5e-152 543.5 446 69.1
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 9.8e-152 540.8 434 68.4
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.3e-151 540.4 449 68.2
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 1.3e-151 540.4 452 67.9
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 1.7e-151 540.0 451 67.6
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.3e-151 538.1 444 67.3
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.3e-151 538.1 444 67.3
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 8.3e-151 537.7 448 68.8
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.4e-150 537.0 453 67.1
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.8e-150 536.6 449 67.3
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.2e-149 533.9 448 67.0
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 3.5e-149 532.3 447 66.0
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 3.5e-149 532.3 446 67.0
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 3.5e-149 532.3 447 68.0
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.7e-149 531.2 439 66.7
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 7.7e-149 531.2 444 66.9
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 5.0e-148 528.5 447 64.4
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.2e-146 523.9 451 66.5
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.2e-146 523.9 455 66.2
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 2.8e-146 522.7 444 66.0
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 2.8e-146 522.7 462 64.5
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 6.1e-146 521.5 447 65.5
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 8.0e-146 521.2 454 66.1
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.8e-145 520.0 442 66.5
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 3.0e-145 519.2 457 64.6
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 4.0e-145 518.8 456 63.8
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 6.8e-145 518.1 449 65.7
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 8.9e-145 517.7 457 65.2
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 2.0e-144 516.5 445 65.8
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 3.4e-144 515.8 495 60.6
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 7.5e-144 514.6 445 66.5
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 9.8e-144 514.2 444 65.3
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 1.3e-143 513.8 449 66.8
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.3e-143 513.8 444 65.5
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 2.8e-143 512.7 448 65.8
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 2.3e-140 503.1 454 62.3
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.1e-139 500.7 455 64.2
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.5e-139 499.6 438 63.5
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 3.6e-138 495.7 454 62.8
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 4.7e-138 495.4 496 58.3
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.2e-136 490.7 445 63.6
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 2.6e-136 489.6 446 64.3
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.6e-136 489.6 447 62.0
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 2.9e-135 486.1 458 62.7
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 1.9e-134 483.4 458 62.9
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 3.2e-134 482.6 447 63.1
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 4.1e-134 482.3 474 60.3
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 5.4e-134 481.9 458 62.4
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 7.0e-134 481.5 458 62.4
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 7.0e-134 481.5 437 64.1
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 7.0e-134 481.5 447 62.6
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 1.6e-133 480.3 444 61.9
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.6e-133 480.3 467 59.5
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.3e-132 477.2 446 60.5
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 2.5e-131 473.0 456 61.6
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 3.1e-129 466.1 445 62.0
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 6.8e-129 464.9 435 61.4
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.5e-128 463.8 447 60.4
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 4.1e-126 455.7 449 60.1
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 5.2e-121 438.7 439 59.2
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.4e-118 430.6 450 60.0
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.0e-116 424.5 451 54.8
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 1.3e-116 424.1 379 65.2
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.5e-115 419.9 447 57.5
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 7.3e-115 418.3 295 74.9
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 3.6e-114 416.0 448 56.2
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.6e-112 409.8 389 58.4
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 4.4e-112 409.1 381 61.4
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 2.8e-106 389.8 442 55.9
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 3.1e-105 386.3 484 50.2
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 3.2e-102 376.3 449 52.8
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 7.8e-101 371.7 317 64.7
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.5e-99 367.5 449 51.4
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 2.5e-99 366.7 437 53.5
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.8e-96 355.5 380 56.3
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.8e-90 335.9 483 48.0
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 4.0e-89 332.8 317 62.1
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 6.9e-89 332.0 444 49.5
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.3e-87 327.8 518 43.2
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 4.9e-87 325.9 321 61.1
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.8e-74 283.5 444 46.8
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.1e-73 280.0 444 46.8
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 9.4e-70 268.5 213 69.0
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 6.7e-68 262.3 169 77.5
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.5e-64 249.6 360 50.0
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.7e-55 221.1 272 49.6
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.7e-55 221.1 272 49.6
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.9e-54 217.6 137 78.1
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 3.2e-54 216.9 341 44.9
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.3e-42 176.0 195 50.8
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.4e-41 172.9 330 40.3
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.4e-36 158.3 183 52.5
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 3.7e-34 150.2 115 66.1
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 9.1e-33 145.6 425 31.5
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 9.1e-33 145.6 83 84.3
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.5e-32 143.7 91 75.8
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 1.3e-31 141.7 74 90.5
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 2.9e-31 140.6 140 55.7
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 2.9e-31 140.6 140 55.7
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.0e-28 132.1 295 36.9
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 6.8e-28 129.4 69 89.9
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 2.6e-27 127.5 121 57.9
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 1.7e-26 124.8 94 68.1
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 4.1e-25 120.2 68 83.8
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 5.0e-23 113.2 138 51.4
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 3.7e-18 97.1 573 24.8
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.4e-12 78.6 62 62.9
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 2.3e-12 77.8 94 52.1
Os09g0281600 Oryza sativa ssp. japonica HOM05D004785 ORTHO05D005704 4.3e-06 57.0 127 35.4
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 5.6e-06 56.6 130 33.8
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 7.3e-06 56.2 68 45.6
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 7.3e-06 56.2 68 45.6


User provided reference genes

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