Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 1.2e-247 859.4 429 100.0
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 8.3e-116 421.4 296 70.3
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 6.0e-114 415.2 418 54.8
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 7.8e-114 414.8 428 55.1
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 5.1e-113 412.1 301 67.4
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 6.6e-113 411.8 347 61.7
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 7.3e-112 408.3 402 56.7
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 8.1e-111 404.8 430 53.7
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.8e-110 403.7 470 50.6
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 3.1e-110 402.9 302 66.2
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.4e-109 399.4 421 53.7
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 7.6e-109 398.3 427 52.5
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 9.9e-109 397.9 365 58.4
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.3e-108 397.5 412 53.4
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 6.4e-108 395.2 432 50.7
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.1e-107 394.4 429 52.4
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 5.4e-107 392.1 494 48.2
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 7.1e-107 391.7 463 49.9
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.6e-106 390.6 435 51.5
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.1e-106 390.2 284 67.3
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.7e-106 389.8 440 52.3
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.7e-105 384.8 389 54.5
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.5e-104 384.0 358 57.0
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.9e-104 383.6 420 52.4
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.3e-104 382.9 420 52.4
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 3.3e-104 382.9 516 46.3
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 5.6e-104 382.1 408 53.7
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 7.3e-104 381.7 437 52.4
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.3e-103 380.9 420 52.1
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.8e-103 379.0 389 54.2
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 8.1e-103 378.3 422 51.7
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 1.4e-102 377.5 416 53.1
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 4.0e-102 375.9 427 50.1
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 4.0e-102 375.9 337 59.1
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 5.3e-102 375.6 413 52.5
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 5.3e-102 375.6 427 50.6
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 6.9e-102 375.2 415 51.8
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 6.9e-102 375.2 408 52.7
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.4e-101 372.5 412 52.2
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.3e-100 370.9 413 50.6
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 3.8e-100 369.4 412 51.9
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 4.9e-100 369.0 422 49.8
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 6.4e-100 368.6 325 59.1
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 1.9e-99 367.1 387 52.7
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.9e-99 367.1 417 50.6
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 7.1e-99 365.2 422 50.5
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 9.3e-99 364.8 387 52.7
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 9.3e-99 364.8 414 48.8
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.6e-98 364.0 413 49.6
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 3.5e-98 362.8 404 50.2
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 4.6e-98 362.5 288 63.2
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 1.7e-97 360.5 299 60.5
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.7e-97 360.5 436 48.4
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 2.3e-97 360.1 391 51.4
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 1.1e-96 357.8 413 49.2
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 2.5e-96 356.7 413 50.4
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 2.5e-96 356.7 281 61.9
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 4.3e-96 355.9 402 49.5
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 5.6e-96 355.5 282 63.1
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 9.6e-96 354.8 418 49.5
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 1.8e-94 350.5 426 47.4
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 4.0e-94 349.4 418 50.7
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 6.9e-94 348.6 413 49.2
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 9.0e-94 348.2 450 47.3
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 1.2e-93 347.8 430 46.3
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 4.5e-93 345.9 434 46.3
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 4.5e-93 345.9 271 63.8
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 8.4e-92 341.7 435 47.4
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 1.1e-91 341.3 291 59.1
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.4e-91 340.9 286 59.4
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.9e-91 340.5 428 46.0
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.4e-91 340.1 312 56.7
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 5.4e-91 339.0 286 61.2
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 7.1e-91 338.6 416 49.3
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 9.3e-91 338.2 294 59.5
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.2e-90 337.8 281 59.4
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.2e-90 337.8 443 47.9
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 1.2e-90 337.8 291 58.4
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 1.6e-90 337.4 415 48.9
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 2.7e-90 336.7 286 60.8
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 2.7e-90 336.7 286 60.8
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 3.5e-90 336.3 393 49.4
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 2.3e-89 333.6 298 59.1
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 6.7e-89 332.0 433 45.5
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 8.7e-89 331.6 286 59.1
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.1e-88 331.3 288 59.4
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 1.9e-88 330.5 416 48.1
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.8e-87 326.6 417 48.2
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.8e-87 326.6 417 48.2
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 3.7e-87 326.2 283 58.0
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 1.1e-86 324.7 414 44.9
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 3.1e-86 323.2 436 44.3
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 1.5e-85 320.9 298 55.7
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 3.2e-83 313.2 304 52.6
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 3.2e-83 313.2 284 56.0
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 7.1e-83 312.0 284 56.3
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 7.9e-82 308.5 395 46.1
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.1e-80 304.7 276 58.0
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 1.9e-80 303.9 277 58.1
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 2.5e-80 303.5 277 58.1
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 9.6e-80 301.6 303 54.5
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.3e-79 301.2 276 57.6
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.3e-79 301.2 276 57.6
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 2.1e-79 300.4 362 45.6
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.8e-79 300.1 369 45.5
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 8.2e-79 298.5 431 44.3
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 4.5e-77 292.7 303 54.5
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.0e-76 291.6 260 58.8
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.2e-76 290.4 411 42.6
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 6.5e-76 288.9 254 57.9
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 2.3e-73 280.4 294 50.0
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 2.3e-73 280.4 435 40.9
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 7.4e-72 275.4 299 50.2
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 1.9e-67 260.8 294 49.3
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.8e-65 254.2 356 44.4
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.0e-64 250.8 274 52.2
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 2.4e-62 243.8 330 47.3
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 2.6e-61 240.4 167 70.1
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 1.4e-57 228.0 188 60.1
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.0e-57 226.9 299 41.8
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.3e-56 223.4 268 48.5
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.1e-54 218.4 347 42.9
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 1.9e-51 207.6 160 63.8
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 7.2e-51 205.7 278 41.7
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 2.1e-50 204.1 145 69.0
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 4.8e-47 193.0 282 37.6
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 2.4e-46 190.7 143 62.9
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 4.1e-46 189.9 293 38.2
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.0e-41 175.3 138 63.0
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 3.0e-41 173.7 109 72.5
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 4.0e-41 173.3 300 39.7
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.2e-35 152.5 112 66.1
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 1.2e-34 151.8 244 35.2
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 2.7e-34 150.6 258 36.0
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.0e-33 148.7 168 50.0
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.5e-32 144.8 102 67.6
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 9.5e-27 125.6 221 36.2
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.6e-26 123.6 176 44.3
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 6.1e-26 122.9 185 38.4
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 5.2e-25 119.8 69 76.8
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 3.4e-24 117.1 98 56.1
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.1e-22 112.1 91 62.6
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 7.0e-22 109.4 78 62.8
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.2e-21 108.6 227 37.4
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 1.0e-20 105.5 90 60.0
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 3.1e-17 94.0 283 27.9
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.9e-17 92.4 63 68.3
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.4e-16 90.5 86 51.2
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 9.8e-16 89.0 186 34.4
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.2e-15 87.8 96 50.0
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 1.1e-14 85.5 194 33.5
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.2e-13 82.0 99 44.4
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.5e-11 74.3 49 65.3
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.3e-11 73.6 63 61.9
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.3e-11 73.6 164 37.2
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.6e-10 70.5 53 67.9
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.0e-09 67.0 80 47.5
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.5e-08 65.1 68 50.0


User provided reference genes

Program Settings