Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 0.0e+00 1545.8 857 100.0
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 1.7e-277 959.5 801 63.0
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 2.5e-276 955.7 849 62.3
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.6e-275 951.4 806 62.7
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 3.3e-273 945.3 876 64.0
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 7.4e-273 944.1 801 65.9
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 8.2e-272 940.6 873 63.8
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.1e-271 938.3 794 62.6
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 1.5e-270 936.4 874 63.2
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 3.6e-267 925.2 870 61.7
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 1.8e-266 922.9 847 61.9
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 5.7e-265 917.9 858 57.9
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 1.7e-264 916.4 876 62.6
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 6.3e-264 914.4 835 59.5
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 5.5e-260 901.4 873 58.4
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 1.2e-259 900.2 794 61.7
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.5e-257 893.3 818 57.9
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 2.8e-256 889.0 798 59.3
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 3.5e-254 882.1 801 58.9
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 7.7e-254 880.9 797 61.2
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 1.4e-252 876.7 806 61.2
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 2.7e-251 872.5 796 60.4
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 3.3e-249 865.5 798 62.2
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 1.3e-248 863.6 798 61.7
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 1.3e-248 863.6 822 58.8
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 1.8e-247 859.8 810 58.9
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 3.1e-247 859.0 811 57.3
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 4.5e-246 855.1 797 56.7
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 7.7e-246 854.4 795 60.4
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.5e-245 851.3 793 59.6
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 6.5e-245 851.3 793 59.6
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 8.5e-245 850.9 793 59.6
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 8.5e-245 850.9 792 59.3
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.5e-244 850.1 795 57.1
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 1.6e-243 846.7 862 58.5
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 1.0e-242 844.0 796 56.5
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 2.3e-242 842.8 794 58.7
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 4.0e-242 842.0 848 57.8
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 5.2e-242 841.6 795 57.2
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 6.7e-242 841.3 795 57.0
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.2e-241 840.5 797 59.8
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 3.3e-241 839.0 800 56.2
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 3.3e-241 839.0 795 58.4
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 2.8e-240 835.9 797 57.7
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 4.8e-240 835.1 794 56.4
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 6.3e-240 834.7 791 59.0
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 1.1e-239 833.9 848 56.1
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 7.0e-239 831.2 792 56.9
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 2.7e-238 829.3 797 55.6
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 1.7e-237 826.6 796 55.3
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 6.5e-237 824.7 795 54.7
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 3.2e-236 822.4 861 54.8
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 9.4e-236 820.8 793 57.0
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 4.7e-235 818.5 780 55.4
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 8.0e-235 817.8 797 55.2
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 4.0e-234 815.5 802 55.5
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.4e-233 812.0 792 55.4
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 1.3e-232 810.4 796 57.2
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.0e-230 803.1 852 56.0
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 7.7e-230 801.2 768 55.1
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.3e-229 800.4 851 54.8
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 5.0e-229 798.5 800 54.9
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 4.7e-227 792.0 806 57.9
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 9.8e-225 784.3 803 56.0
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 3.7e-224 782.3 794 55.3
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 7.0e-223 778.1 795 55.5
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 7.3e-220 768.1 769 53.4
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 1.2e-219 767.3 808 55.4
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 1.6e-219 766.9 796 55.0
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 6.1e-219 765.0 808 55.0
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.0e-218 764.2 800 54.0
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 4.0e-218 762.3 810 55.1
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 4.0e-218 762.3 841 55.2
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 6.8e-218 761.5 794 55.5
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 7.5e-217 758.1 797 54.3
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 1.7e-216 756.9 796 54.8
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 4.9e-216 755.4 796 54.4
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 6.4e-216 755.0 806 56.2
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 9.2e-215 751.1 799 53.7
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 3.0e-213 746.1 843 51.4
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 6.6e-213 745.0 798 53.5
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 1.9e-212 743.4 797 53.3
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 4.3e-212 742.3 815 51.9
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 5.6e-212 741.9 799 52.2
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.4e-210 737.3 795 52.8
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 1.2e-209 734.2 652 57.7
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 6.4e-208 728.4 806 50.7
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 5.4e-207 725.3 607 66.4
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 3.6e-203 712.6 790 54.2
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 2.3e-202 709.9 764 52.2
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 1.9e-199 700.3 803 48.7
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 1.7e-192 677.2 718 54.0
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 1.6e-190 670.6 806 50.7
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 5.8e-185 652.1 858 46.4
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 1.1e-183 647.9 810 46.0
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 2.4e-183 646.7 794 48.6
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 9.3e-175 618.2 475 62.7
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.5e-172 610.1 618 58.9
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 3.1e-162 576.6 818 42.7
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 1.2e-161 574.7 829 41.1
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 8.2e-155 552.0 678 46.2
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 9.1e-146 521.9 812 39.8
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 2.9e-144 516.9 805 39.6
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 2.7e-142 510.4 545 53.4
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 4.7e-134 483.0 580 46.4
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 1.8e-130 471.1 385 58.7
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.9e-127 461.1 478 57.5
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 3.4e-124 450.3 385 62.1
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 1.3e-123 448.4 477 61.2
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 1.4e-122 444.9 762 36.2
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 2.2e-115 421.0 477 52.2
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 1.8e-106 391.3 397 57.7
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 4.6e-97 360.1 476 48.5
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.3e-93 347.8 425 50.6
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 4.9e-83 313.5 427 48.2
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 9.6e-71 272.7 523 32.9
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 8.4e-67 259.6 234 53.8
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 1.6e-54 218.8 363 42.4
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 4.8e-46 190.7 186 50.0
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.0e-44 185.3 199 58.3
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 2.1e-33 148.7 479 23.6
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 2.7e-25 121.7 186 41.9
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.0e-24 119.8 80 66.2
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 2.0e-23 115.5 82 64.6
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 2.6e-23 115.2 193 37.8
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 1.3e-22 112.8 94 54.3
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 3.7e-22 111.3 213 32.9
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 9.1e-21 106.7 161 46.0
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 3.6e-17 94.7 375 30.9
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 1.5e-15 89.4 170 42.9
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 4.8e-14 84.3 104 41.3
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 6.5e-11 73.9 66 53.0
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 1.5e-10 72.8 121 42.1
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 1.5e-10 72.8 121 42.1
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 6.1e-09 67.4 71 57.7
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 6.1e-09 67.4 71 57.7
Psat3g055080 Pisum sativum HOM05D002279 ORTHO05D002644 8.0e-09 67.0 311 26.7
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.0e-08 66.6 42 78.6
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.0e-08 66.6 42 78.6
Aqoxy1G01843 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 8.8e-08 63.5 337 23.4
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 1.2e-07 63.2 515 19.2
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 1.5e-07 62.8 322 24.8
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 4.4e-07 61.2 320 25.9
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 4.4e-07 61.2 312 19.2
TWI53G1345 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 4.4e-07 61.2 525 21.0
SEGI_41295 Sequoiadendron giganteum HOM05D002279 ORTHO05D002644 5.7e-07 60.8 295 26.4
Lj1C73G6 Lonicera japonica HOM05D002279 ORTHO05D002644 9.8e-07 60.1 314 26.1
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 1.3e-06 59.7 80 45.0
Sc24g0003670 Simmondsia chinensis HOM05D002279 ORTHO05D002644 1.3e-06 59.7 313 26.2
Phvul.001G164500 Phaseolus vulgaris HOM05D002279 ORTHO05D002644 2.2e-06 58.9 309 25.6
A03p55220 Brassica napus HOM05D005319 ORTHO05D041784 3.7e-06 58.2 47 61.7
BraA03t14581Z Brassica rapa HOM05D005319 ORTHO05D041784 3.7e-06 58.2 47 61.7
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 3.7e-06 58.2 320 25.3
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 4.8e-06 57.8 293 27.0
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 4.8e-06 57.8 293 26.3
BcaC07g36934 Brassica carinata HOM05D002279 ORTHO05D002644 4.8e-06 57.8 327 25.1
C08p00900 Brassica napus HOM05D002279 ORTHO05D002644 4.8e-06 57.8 327 25.1
CDE04G3245 Ceratophyllum demersum HOM05D006053 ORTHO05D008381 4.8e-06 57.8 93 32.3
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 6.3e-06 57.4 315 24.4
TPR.G20054 Trifolium pratense HOM05D002279 ORTHO05D002644 6.3e-06 57.4 311 24.8
BcaNung06598 Brassica carinata HOM05D005319 ORTHO05D010222 8.3e-06 57.0 41 68.3
A08p37110 Brassica napus HOM05D002279 ORTHO05D002644 8.3e-06 57.0 318 25.2
C05p02340 Brassica napus HOM05D002279 ORTHO05D002644 8.3e-06 57.0 300 25.0
Sp2g08790 Schrenkiella parvula HOM05D002279 ORTHO05D002644 8.3e-06 57.0 316 25.0


User provided reference genes

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