Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 1.6e-302 1042.0 522 100.0
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 8.3e-235 817.0 527 78.2
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 3.5e-233 811.6 522 77.4
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 9.5e-231 803.5 518 78.4
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.6e-228 795.4 527 76.5
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 4.4e-228 794.7 526 76.2
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.7e-227 792.7 523 75.5
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 2.9e-227 792.0 521 77.7
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.1e-226 790.0 518 77.0
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 1.1e-226 790.0 451 86.0
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 1.9e-226 789.3 509 78.6
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 3.2e-226 788.5 506 78.5
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.2e-225 786.6 527 74.6
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 1.2e-225 786.6 525 74.5
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-225 786.6 518 76.1
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 1.6e-225 786.2 513 77.0
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.6e-225 786.2 518 76.4
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 2.0e-225 785.8 447 84.8
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 3.5e-225 785.0 506 77.5
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 1.5e-223 779.6 518 76.1
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.3e-223 778.1 514 76.3
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 7.3e-223 777.3 440 85.7
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.6e-222 776.2 477 81.1
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 2.1e-222 775.8 528 74.8
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 2.1e-222 775.8 475 80.8
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.7e-222 774.6 506 76.9
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 6.2e-222 774.2 445 84.3
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.1e-221 773.5 529 74.7
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 3.1e-221 771.9 470 81.1
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 8.9e-221 770.4 526 73.6
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 1.5e-220 769.6 448 83.9
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 3.4e-220 768.5 441 85.3
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.4e-220 768.1 518 75.1
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.2e-219 765.8 465 82.4
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 4.9e-219 764.6 455 81.8
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 8.3e-219 763.8 468 80.3
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.4e-218 763.1 473 80.3
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 3.2e-218 761.9 445 84.5
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 5.4e-218 761.1 446 83.2
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 7.1e-218 760.8 522 73.8
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.0e-216 756.9 488 76.6
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 1.7e-216 756.1 450 81.8
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 3.0e-216 755.4 495 76.8
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 3.9e-216 755.0 473 79.3
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 5.1e-216 754.6 473 78.2
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 6.6e-216 754.2 448 81.0
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.1e-215 753.4 517 73.5
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 1.5e-215 753.1 479 78.7
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 5.6e-215 751.1 517 72.9
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 5.6e-215 751.1 519 74.0
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 9.5e-215 750.4 443 81.9
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 1.2e-214 750.0 525 71.0
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 2.1e-214 749.2 450 80.4
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 2.8e-214 748.8 450 80.7
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 8.1e-214 747.3 463 79.9
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 1.1e-213 746.9 470 79.4
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 1.4e-213 746.5 464 79.3
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.4e-213 745.7 458 80.6
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 8.9e-213 743.8 518 72.6
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 1.2e-212 743.4 428 84.3
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.2e-212 743.4 464 79.1
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.4e-212 741.9 458 80.6
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 3.4e-212 741.9 515 72.4
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 9.9e-212 740.3 446 80.7
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.7e-211 739.6 465 79.8
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.2e-211 739.2 468 79.3
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.8e-211 738.4 460 79.8
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 4.9e-211 738.0 430 83.7
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 8.4e-211 737.3 429 82.8
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 8.4e-211 737.3 429 82.8
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.1e-210 736.9 499 75.2
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.4e-210 735.7 461 80.0
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.4e-210 735.7 517 71.8
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 2.4e-210 735.7 428 82.9
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.4e-210 734.6 443 80.6
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 9.2e-210 733.8 445 81.3
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.2e-209 733.4 431 81.7
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 2.1e-209 732.6 455 80.0
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.1e-209 732.6 531 70.4
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 1.3e-208 729.9 443 80.4
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 1.5e-207 726.5 465 77.0
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 5.6e-207 724.5 438 80.6
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 9.6e-207 723.8 472 76.5
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 1.6e-206 723.0 478 75.1
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 2.1e-206 722.6 449 79.5
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 2.8e-206 722.2 465 77.8
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 3.6e-206 721.8 446 78.9
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.2e-204 716.8 428 81.1
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 9.9e-204 713.8 434 79.3
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 9.9e-204 713.8 428 80.8
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.7e-203 713.0 441 77.8
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 2.2e-203 712.6 444 78.2
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 2.9e-203 712.2 496 72.6
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 4.9e-203 711.4 472 75.4
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 4.9e-203 711.4 434 78.6
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.9e-202 709.5 426 80.8
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 3.2e-202 708.8 426 80.8
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 1.2e-201 706.8 426 80.8
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.2e-201 706.8 426 80.8
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 2.7e-201 705.7 435 77.7
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 3.5e-201 705.3 454 76.0
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 4.6e-201 704.9 433 80.4
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.7e-200 703.0 520 68.3
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 2.3e-200 702.6 477 74.0
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 5.1e-200 701.4 426 79.8
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 5.1e-200 701.4 453 78.8
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 4.3e-199 698.4 438 76.9
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 3.1e-197 692.2 448 75.4
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.5e-196 689.9 448 75.0
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.9e-194 682.9 566 64.5
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 4.2e-194 681.8 445 77.1
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.6e-193 679.9 403 83.4
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.2e-188 663.7 410 79.0
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 6.7e-184 647.9 426 72.8
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.9e-183 646.4 428 72.4
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 2.0e-180 636.3 463 67.6
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 8.4e-179 630.9 433 70.0
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 1.1e-173 614.0 445 67.4
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.0e-168 597.4 369 78.3
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 6.7e-160 568.2 324 86.4
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.1e-154 550.8 355 78.3
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.7e-148 528.1 302 84.1
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 9.4e-146 521.2 315 80.6
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 2.7e-145 519.6 335 76.7
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.2e-143 514.2 426 61.0
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.2e-143 514.2 328 75.9
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.1e-141 505.8 299 83.3
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 6.5e-139 498.4 429 60.4
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.7e-137 493.0 440 57.3
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 5.5e-130 468.8 299 77.6
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.0e-128 462.6 340 70.9
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 6.6e-123 445.3 277 76.5
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 1.5e-122 444.1 424 56.4
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.1e-107 392.5 435 46.7
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 1.6e-100 370.9 242 76.9
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 8.4e-94 348.6 437 44.6
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.3e-83 313.9 175 85.1
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 5.1e-75 286.2 355 44.5
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.1e-56 223.4 135 77.8
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.8e-54 216.9 178 65.7
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 3.4e-47 193.7 147 68.7
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.9e-45 188.0 123 74.0
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 3.6e-44 183.7 120 70.8
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.4e-43 181.8 180 52.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.3e-41 175.3 130 66.9
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 8.5e-38 162.5 96 78.1
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 2.4e-32 144.4 90 75.6
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 2.1e-28 131.3 110 61.8
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 2.7e-28 131.0 85 71.8
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.4e-27 128.6 79 74.7
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 2.3e-27 127.9 108 61.1
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 4.0e-27 127.1 79 74.7
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 1.5e-26 125.2 79 73.4
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 7.5e-26 122.9 76 73.7
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 1.8e-24 118.2 78 71.8
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 1.0e-22 112.5 82 70.7
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 7.2e-21 106.3 96 59.4
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 7.2e-21 106.3 96 59.4
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 3.6e-20 104.0 93 55.9
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.5e-18 98.6 258 30.2
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.2e-15 89.0 53 79.2


User provided reference genes

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