Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 0.0e+00 1088.2 587 100.0
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 3.0e-172 609.4 574 59.6
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 4.7e-170 602.1 573 58.3
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 4.1e-166 589.0 593 55.5
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.2e-165 587.4 575 57.6
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 3.9e-164 582.4 588 55.8
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.2e-162 575.1 574 56.6
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.2e-160 570.9 568 54.9
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.2e-159 566.6 580 55.5
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 4.6e-157 558.9 578 56.1
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.4e-153 546.6 586 53.6
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 5.8e-152 542.0 576 54.0
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 6.0e-149 531.9 573 53.1
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 9.6e-147 524.6 544 53.9
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 9.0e-145 518.1 557 53.1
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.6e-144 516.5 552 54.2
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 9.9e-144 514.6 565 52.0
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 8.4e-143 511.5 579 50.8
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.1e-142 508.4 576 51.9
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 2.7e-141 506.5 574 51.6
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 4.6e-141 505.8 579 51.6
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 5.1e-140 502.3 580 50.3
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 5.1e-140 502.3 531 53.9
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 6.6e-140 501.9 579 49.6
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.9e-139 500.4 563 51.3
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.8e-137 493.8 582 48.3
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 5.8e-136 488.8 539 51.2
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 7.6e-136 488.4 534 50.7
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 5.5e-134 482.3 577 50.4
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.7e-133 479.9 577 50.1
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 2.7e-133 479.9 560 50.7
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.5e-133 479.6 535 51.6
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 6.0e-133 478.8 578 50.7
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 7.9e-133 478.4 578 50.5
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.3e-132 477.6 573 48.9
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 2.5e-131 473.4 583 49.4
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 2.5e-131 473.4 585 47.9
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 5.6e-131 472.2 585 48.0
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 9.6e-131 471.5 544 48.2
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 2.1e-130 470.3 574 48.6
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.1e-130 470.3 578 50.0
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.1e-129 468.0 577 49.9
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.1e-129 468.0 577 48.0
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.8e-129 467.2 498 53.6
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 2.4e-129 466.8 568 48.2
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 9.0e-129 464.9 572 48.3
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 9.0e-129 464.9 539 49.0
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 3.4e-128 463.0 540 48.5
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 4.5e-128 462.6 574 47.9
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 5.8e-128 462.2 569 48.2
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.3e-127 461.1 597 49.4
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.3e-127 461.1 580 46.9
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 8.4e-127 458.4 581 47.8
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.5e-126 455.7 577 46.8
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 5.5e-126 455.7 551 49.4
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 2.7e-125 453.4 564 46.5
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 2.7e-125 453.4 551 49.4
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.5e-125 453.0 552 46.2
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.5e-125 453.0 564 46.5
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 7.9e-125 451.8 631 43.7
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 5.1e-124 449.1 576 46.7
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.1e-124 449.1 564 46.6
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 5.1e-124 449.1 586 45.4
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.3e-123 446.4 571 46.2
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.3e-123 446.4 571 46.2
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 9.6e-123 444.9 588 45.6
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 2.1e-122 443.7 562 46.3
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 2.8e-122 443.4 544 46.5
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 8.2e-122 441.8 554 46.8
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.8e-121 440.7 576 47.2
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 2.4e-121 440.3 579 45.9
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.1e-121 439.9 540 48.0
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 6.9e-121 438.7 582 45.5
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 6.9e-121 438.7 573 47.5
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.5e-120 437.6 539 47.5
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 4.5e-120 436.0 573 46.4
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 7.6e-120 435.3 566 45.6
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 2.9e-119 433.3 572 47.2
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 5.0e-119 432.6 572 46.7
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.1e-118 431.4 556 46.2
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.9e-118 430.6 538 45.7
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 2.5e-118 430.3 469 55.4
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.6e-117 426.4 579 44.6
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 4.6e-117 426.0 541 46.6
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 5.1e-116 422.5 542 45.4
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.6e-114 417.5 564 44.7
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.7e-114 416.4 577 44.4
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 6.3e-114 415.6 535 44.9
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 8.2e-114 415.2 577 43.7
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.2e-112 411.4 579 44.4
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 2.0e-112 410.6 558 46.2
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 2.6e-112 410.2 554 45.5
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.4e-112 409.8 552 43.3
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.7e-111 407.5 460 51.3
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.4e-110 404.4 540 44.4
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.8e-108 397.5 536 44.6
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 3.9e-108 396.4 579 43.4
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.5e-107 394.4 590 41.9
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.6e-107 393.7 383 58.7
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 2.2e-106 390.6 541 43.3
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 2.2e-106 390.6 464 49.1
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 5.3e-105 386.0 577 41.8
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 9.1e-105 385.2 566 41.9
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 7.7e-104 382.1 539 43.4
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.7e-103 380.9 577 41.1
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 5.5e-102 375.9 531 42.9
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 6.1e-101 372.5 578 40.7
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 2.3e-100 370.5 578 40.7
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 6.7e-100 369.0 592 41.9
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.8e-100 368.6 354 56.5
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 6.3e-98 362.5 578 40.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 8.2e-98 362.1 580 40.5
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 5.3e-97 359.4 580 40.3
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 9.1e-97 358.6 552 43.3
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.2e-96 358.2 540 40.9
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 7.7e-96 355.5 393 49.1
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.1e-94 351.7 465 47.7
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.1e-89 335.1 422 48.8
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 5.0e-87 326.2 531 39.5
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 2.5e-86 323.9 561 38.5
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 9.8e-83 312.0 426 44.4
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 9.8e-83 312.0 469 41.8
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.4e-81 307.4 576 37.3
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.9e-78 297.7 264 59.8
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 2.5e-78 297.4 540 36.9
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 4.2e-78 296.6 468 41.9
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.1e-65 253.4 261 50.6
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.6e-64 251.5 404 37.4
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.2e-60 236.5 451 36.8
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.0e-55 219.9 335 42.7
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.7e-53 213.4 250 48.4
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.1e-46 192.2 371 35.8
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 4.3e-46 190.3 362 35.1
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 6.2e-45 186.4 248 41.1
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 8.1e-45 186.0 240 47.5
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.0e-44 183.7 216 47.2
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 4.6e-40 170.2 156 59.0
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.5e-38 164.5 153 58.2
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.6e-38 163.3 153 58.2
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 6.2e-37 159.8 537 25.9
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 4.0e-36 157.1 515 28.2
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 7.6e-35 152.9 538 27.3
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 3.2e-33 147.5 567 25.6
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 4.3e-30 137.1 535 27.5
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 4.3e-30 137.1 561 23.5
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 5.6e-30 136.7 161 41.6
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.8e-29 133.7 112 58.9
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 1.4e-28 132.1 162 48.1
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.0e-28 130.6 144 45.8
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.2e-26 124.8 160 44.4
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.9e-26 124.4 223 41.3
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.7e-24 117.9 146 43.2
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 3.5e-24 117.5 140 42.9
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 4.6e-24 117.1 123 53.7
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 6.0e-24 116.7 152 41.4
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.0e-23 115.9 99 57.6
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.1e-21 108.2 149 42.3
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 8.1e-21 106.3 165 40.6
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.0e-19 101.7 121 49.6
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 2.9e-18 97.8 620 23.1
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 6.4e-18 96.7 169 36.7
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 5.5e-17 93.6 273 28.2
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.1e-14 85.9 84 51.2
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.9e-14 85.1 111 39.6
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 1.9e-14 85.1 74 60.8
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.9e-14 85.1 117 47.9
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 1.9e-14 85.1 128 37.5
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.3e-14 84.3 113 47.8
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.6e-14 83.6 69 59.4
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.6e-13 82.0 85 50.6
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.2e-13 80.1 111 37.8
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.0e-11 75.1 132 34.1
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 2.6e-11 74.7 74 50.0
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 2.6e-11 74.7 410 25.9
Sopen01g047030 Solanum pennellii HOM05D003578 ORTHO05D004021 3.8e-10 70.9 89 48.3
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 3.2e-09 67.8 65 55.4
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 1.6e-08 65.5 118 36.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.1e-08 65.1 68 51.5
Solyc01g150163.1 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.8e-07 62.0 77 46.8
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.8e-07 62.0 55 54.5
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.5e-06 58.2 66 47.0
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.5e-06 58.2 66 47.0
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 5.7e-06 57.0 84 32.1


User provided reference genes

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