Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g21650 Coffea canephora HOM05D006166 ORTHO05D007663 5.3e-262 907.1 453 100.0
Cfa005611 Carpinus fangiana HOM05D006166 ORTHO05D007663 6.2e-170 601.3 433 71.1
Oeu026161.1 Olea europaea HOM05D006166 ORTHO05D007663 1.8e-169 599.7 422 70.6
Oeu007956.1 Olea europaea HOM05D006166 ORTHO05D007663 7.9e-165 584.3 444 66.9
Sopen11g020300 Solanum pennellii HOM05D006166 ORTHO05D007663 1.5e-163 580.1 440 66.1
CSS0045599 Camellia sinensis var. sinensis HOM05D006166 ORTHO05D007663 4.3e-163 578.6 407 71.3
MSTRG.16576 Avicennia marina HOM05D006166 ORTHO05D007663 9.6e-163 577.4 412 71.6
Eucgr.G00773 Eucalyptus grandis HOM05D006166 ORTHO05D007663 1.3e-162 577.0 414 69.3
SalBow5G4894 Salvia bowleyana HOM05D006166 ORTHO05D007663 4.8e-162 575.1 407 69.5
Gorai.013G062000 Gossypium raimondii HOM05D006166 ORTHO05D007663 6.2e-162 574.7 451 66.1
PGSC0003DMG400022942 Solanum tuberosum HOM05D006166 ORTHO05D007663 2.4e-161 572.8 439 65.8
SGA_v2.0_scaffold83G26295 Striga asiatica HOM05D006166 ORTHO05D007663 3.1e-161 572.4 500 59.6
Rhsim11G0136200 Rhododendron simsii HOM05D006166 ORTHO05D007663 4.0e-161 572.0 438 67.1
Duzib132G0630 Durio zibethinus HOM05D006166 ORTHO05D007663 6.9e-161 571.2 448 66.1
Lalb_Chr10g0097721 Lupinus albus HOM05D006166 ORTHO05D007663 1.3e-159 567.0 423 66.7
ECA236G4484 Erigeron canadensis HOM05D006166 ORTHO05D007663 1.7e-159 566.6 418 68.7
vmacro01821 Vaccinium macrocarpon HOM05D006166 ORTHO05D007663 2.2e-159 566.2 438 66.0
Migut.B00617 Erythranthe guttata HOM05D006166 ORTHO05D007663 6.4e-159 564.7 427 66.7
Thecc.02G140300 Theobroma cacao HOM05D006166 ORTHO05D007663 1.4e-158 563.5 411 68.4
CiPaw.05G036600 Carya illinoinensis HOM05D006166 ORTHO05D007663 1.9e-158 563.1 409 69.2
Lj5A240G38 Lonicera japonica HOM05D006166 ORTHO05D007663 1.9e-158 563.1 456 65.1
Peaxi162Scf00152g01019 Petunia axillaris HOM05D006166 ORTHO05D007663 1.9e-158 563.1 449 64.1
CiPaw.06G152600 Carya illinoinensis HOM05D006166 ORTHO05D007663 2.4e-158 562.8 450 64.2
MELO3C018652.2 Cucumis melo HOM05D006166 ORTHO05D007663 9.3e-158 560.8 407 68.3
PGR042G2317 Punica granatum HOM05D006166 ORTHO05D007663 1.6e-157 560.1 430 66.5
TWI14G0161 Tripterygium wilfordii HOM05D006166 ORTHO05D007663 1.6e-157 560.1 409 68.2
QL11p020534 Quercus lobata HOM05D006166 ORTHO05D007663 2.7e-157 559.3 458 63.1
Manes.06G010300 Manihot esculenta HOM05D006166 ORTHO05D007663 6.0e-157 558.1 412 66.7
Manes.14G166700 Manihot esculenta HOM05D006166 ORTHO05D007663 6.0e-157 558.1 410 68.8
CsaV3_7G006420 Cucumis sativus L. HOM05D006166 ORTHO05D007663 7.9e-157 557.8 408 67.9
Nn5g29064 Nelumbo nucifera HOM05D006166 ORTHO05D007663 7.9e-157 557.8 405 66.9
TAR628G0634 Trochodendron aralioides HOM05D006166 ORTHO05D007663 7.9e-157 557.8 438 63.7
HanXRQChr11g0338151 Helianthus annuus HOM05D006166 ORTHO05D007663 1.3e-156 557.0 426 64.8
Gohir.A13G066600 Gossypium hirsutum HOM05D006166 ORTHO05D007663 6.7e-156 554.7 451 64.3
COL.COLO4_24968 Corchorus olitorius HOM05D006166 ORTHO05D007663 1.1e-155 553.9 422 65.9
Cpa.g.sc42.78 Carica papaya HOM05D006166 ORTHO05D007663 1.9e-155 553.1 405 68.6
RcHm_v2.0_Chr2g0123601 Rosa chinensis HOM05D006166 ORTHO05D007663 3.3e-155 552.4 408 67.2
VMungo0251G2633 Vigna mungo HOM05D006166 ORTHO05D007663 3.3e-155 552.4 423 64.3
Prupe.8G062500 Prunus persica HOM05D006166 ORTHO05D007663 4.3e-155 552.0 407 67.6
Duzib248G0370 Durio zibethinus HOM05D006166 ORTHO05D007663 1.3e-154 550.4 407 68.6
Glyma.08G073700 Glycine max HOM05D006166 ORTHO05D007663 1.3e-154 550.4 410 66.3
Nn1g05303 Nelumbo nucifera HOM05D006166 ORTHO05D007663 1.3e-154 550.4 427 65.8
Medtr4g094258 Medicago truncatula HOM05D006166 ORTHO05D007663 1.6e-154 550.1 434 63.8
Sabra01G0159700 Salix brachista HOM05D006166 ORTHO05D007663 2.1e-154 549.7 414 66.9
Sabra01G0159900 Salix brachista HOM05D006166 ORTHO05D007663 2.1e-154 549.7 414 66.9
ClCG09G015330 Citrullus lanatus HOM05D006166 ORTHO05D007663 3.7e-154 548.9 429 65.0
CANSAT11G1721 Cannabis sativa HOM05D006166 ORTHO05D007663 4.8e-154 548.5 404 67.3
Potri.001G206400 Populus trichocarpa HOM05D006166 ORTHO05D007663 1.1e-153 547.4 440 64.5
Ca_18343_v3 Cicer arietinum L. HOM05D006166 ORTHO05D007663 1.4e-153 547.0 411 65.0
Lj4g0006983 Lotus japonicus HOM05D006166 ORTHO05D007663 1.8e-153 546.6 408 65.4
arahy.Tifrunner.gnm1.ann1.KS83Z6 Arachis hypogaea HOM05D006166 ORTHO05D007663 2.4e-153 546.2 402 66.7
TPR.G10454 Trifolium pratense HOM05D006166 ORTHO05D007663 2.4e-153 546.2 414 64.5
MD10G1052200 Malus domestica HOM05D006166 ORTHO05D007663 5.3e-153 545.0 405 68.1
Glyma.05G118600 Glycine max HOM05D006166 ORTHO05D007663 6.9e-153 544.7 405 65.9
Phvul.002G207800 Phaseolus vulgaris HOM05D006166 ORTHO05D007663 6.9e-153 544.7 415 64.6
arahy.Tifrunner.gnm1.ann1.1L8CHD Arachis hypogaea HOM05D006166 ORTHO05D007663 9.0e-153 544.3 406 66.5
Lsat_1_v5_gn_7_80840 Lactuca sativa HOM05D006166 ORTHO05D007663 1.2e-152 543.9 403 65.8
FAN28G2956 Fragaria x ananassa HOM05D006166 ORTHO05D007663 5.8e-152 541.6 408 66.4
FAN26G0367 Fragaria x ananassa HOM05D006166 ORTHO05D007663 7.6e-152 541.2 408 66.2
Atru.chr6.1112 Acer truncatum HOM05D006166 ORTHO05D007663 1.0e-151 540.8 413 66.3
Actinidia00261 Actinidia chinensis HOM05D006166 ORTHO05D007663 4.9e-151 538.5 375 71.2
AUR62013110 Chenopodium quinoa HOM05D006166 ORTHO05D007663 6.5e-151 538.1 426 64.6
Sed0015493 Sechium edule HOM05D006166 ORTHO05D007663 1.4e-150 537.0 404 67.1
FvH4_1g25470 Fragaria vesca HOM05D006166 ORTHO05D007663 3.2e-150 535.8 407 65.8
Aqoxy6G00587 Aquilegia oxysepala HOM05D006166 ORTHO05D007663 4.2e-150 535.4 408 65.4
FAN19G2366 Fragaria x ananassa HOM05D006166 ORTHO05D007663 1.6e-149 533.5 407 65.6
Psat7g098480 Pisum sativum HOM05D006166 ORTHO05D007663 1.0e-148 530.8 413 62.5
unitig_26.g9064 Utricularia gibba HOM05D006166 ORTHO05D007663 2.5e-147 526.2 477 58.7
Ciclev10028390m.g Citrus clementina HOM05D006166 ORTHO05D007663 1.4e-145 520.4 426 62.7
BolC3t17880H Brassica oleracea HOM05D006166 ORTHO05D007663 1.5e-144 516.9 421 60.1
Sp3g27280 Schrenkiella parvula HOM05D006166 ORTHO05D007663 1.0e-143 514.2 406 61.8
Hund06393 Selenicereus undatus HOM05D006166 ORTHO05D007663 2.2e-143 513.1 439 61.0
THA.LOC104807167 Tarenaya hassleriana HOM05D006166 ORTHO05D007663 2.9e-143 512.7 413 63.2
Carub.0003s2824 Capsella rubella HOM05D006166 ORTHO05D007663 8.5e-143 511.1 410 61.0
AL3G45670 Arabidopsis lyrata HOM05D006166 ORTHO05D007663 7.2e-142 508.1 404 61.1
AT2G13840 Arabidopsis thaliana HOM05D006166 ORTHO05D007663 4.6e-141 505.4 411 59.4
Thhalv10022694m.g Eutrema salsugineum HOM05D006166 ORTHO05D007663 1.0e-140 504.2 404 60.6
EL10Ac9g21463 Beta vulgaris HOM05D006166 ORTHO05D007663 3.0e-140 502.7 420 61.7
PSO133G0062 Papaver somniferum HOM05D006166 ORTHO05D007663 3.9e-140 502.3 402 62.2
Hund00054 Selenicereus undatus HOM05D006166 ORTHO05D007663 5.1e-140 501.9 417 61.4
C03p55960 Brassica napus HOM05D006166 ORTHO05D007663 6.7e-140 501.5 404 60.4
BcaC01g03110 Brassica carinata HOM05D006166 ORTHO05D007663 3.3e-139 499.2 404 60.1
BraA03t13646Z Brassica rapa HOM05D006166 ORTHO05D007663 7.4e-139 498.0 404 59.4
A03p45110 Brassica napus HOM05D006166 ORTHO05D007663 9.7e-139 497.7 404 59.4
PSO541G1328 Papaver somniferum HOM05D006166 ORTHO05D007663 2.2e-138 496.5 402 61.4
BcaB08g34548 Brassica carinata HOM05D006166 ORTHO05D007663 6.3e-138 495.0 404 59.4
GSVIVG01003077001 Vitis vinifera HOM05D006166 ORTHO05D007663 2.2e-135 486.5 319 73.4
MBI05_g32464_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 8.5e-135 484.6 441 58.3
CAN.G924.1 Capsicum annuum HOM05D006166 ORTHO05D007663 1.9e-134 483.4 330 70.6
CDE05G0221 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 7.9e-133 478.0 357 64.7
Nitab4.5_0001937g0070 Nicotiana tabacum HOM05D006166 ORTHO05D007663 3.3e-131 472.6 346 67.6
Aa31LG8G12460 Aethionema arabicum HOM05D006166 ORTHO05D007663 4.4e-131 472.2 490 51.0
ATR0564G319 Amborella trichopoda HOM05D006166 ORTHO05D007663 4.4e-131 472.2 367 63.8
Nitab4.5_0000215g0090 Nicotiana tabacum HOM05D006166 ORTHO05D007663 7.4e-131 471.5 346 67.9
DCAR_009495 Daucus carota HOM05D000068 ORTHO05D000084 1.8e-129 466.8 318 71.1
Gohir.D13G055000 Gossypium hirsutum HOM05D006166 ORTHO05D007663 2.5e-126 456.4 319 70.2
SEGI_35388 Sequoiadendron giganteum HOM05D006166 ORTHO05D007663 4.1e-121 439.1 426 52.6
Os03g0192000 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 3.8e-119 432.6 424 51.7
AUR62010115 Chenopodium quinoa HOM05D006166 ORTHO05D007663 2.7e-112 409.8 313 64.9
Cc03_g14510 Coffea canephora HOM05D006166 ORTHO05D007663 2.2e-111 406.8 333 67.0
Os02g0752600 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 6.8e-108 395.2 365 55.9
FAN23G1673 Fragaria x ananassa HOM05D006166 ORTHO05D007663 5.7e-107 392.1 290 66.9
Sc14g0003300 Simmondsia chinensis HOM05D006166 ORTHO05D007663 1.8e-105 387.1 281 68.3
HPP92_016815 Vanilla planifolia HOM05D006166 ORTHO05D007663 3.8e-103 379.4 351 54.4
CARHR104670 Cardamine hirsuta HOM05D006166 ORTHO05D007663 1.5e-102 377.5 276 67.8
Dinv24200 Davidia involucrata HOM05D006166 ORTHO05D007663 4.4e-99 365.9 451 48.3
Mapoly0026s0056 Marchantia polymorpha HOM05D006166 ORTHO05D007663 1.7e-98 364.0 412 47.3
SMO174G0124 Selaginella moellendorffii HOM05D006166 ORTHO05D007663 1.6e-93 347.4 295 56.6
AagrBONN_evm.TU.Sc2ySwM_117.2616 Anthoceros agrestis HOM05D006166 ORTHO05D007663 9.8e-91 338.2 420 45.7
Cfa005618 Carpinus fangiana HOM05D006166 ORTHO05D007663 3.0e-87 326.6 288 61.1
Ah.01g009510 Amaranthus hybridus HOM05D006166 ORTHO05D007663 8.6e-87 325.1 245 64.5
Pp3c6_6030 Physcomitrium patens HOM05D006166 ORTHO05D007663 3.1e-84 316.6 353 48.7
Solyc11g044800.3 Solanum lycopersicum HOM05D006166 ORTHO05D007663 2.6e-83 313.5 215 70.7
Haze_10674 Corylus avellana HOM05D006166 ORTHO05D007663 1.6e-80 304.3 322 52.8
MBI02_g36658_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 1.1e-78 298.1 290 51.7
Dinv09040 Davidia involucrata HOM05D006166 ORTHO05D007663 1.7e-71 274.2 158 84.2
Zm00001eb007010 Zea mays HOM05D006166 ORTHO05D007663 8.1e-69 265.4 262 50.0
Pp3c6_6031 Physcomitrium patens HOM05D006166 ORTHO05D007663 6.8e-68 262.3 316 45.6
Glyma.17G217500 Glycine max HOM05D006166 ORTHO05D007663 1.2e-64 251.5 189 63.5
CDE05G0065 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 3.9e-55 219.9 231 48.9
Ciclev10013528m.g Citrus clementina HOM05D006166 ORTHO05D007663 6.2e-53 212.6 163 65.0
Ciclev10033347m.g Citrus clementina HOM05D006166 ORTHO05D007663 4.3e-46 189.9 143 65.7
Pp3s70_110 Physcomitrium patens HOM05D006166 ORTHO05D007663 9.6e-38 162.2 282 34.4
Dinv09041 Davidia involucrata HOM05D006166 ORTHO05D000293 1.5e-35 154.8 153 59.5
Haze_10680 Corylus avellana HOM05D006166 ORTHO05D007663 5.1e-31 139.8 121 57.9
Haze_10658 Corylus avellana HOM05D006166 ORTHO05D007663 1.9e-30 137.9 115 59.1
Haze_10661 Corylus avellana HOM05D006166 ORTHO05D007663 2.2e-29 134.4 192 45.8
SHI16502 Sapria himalayana HOM05D006166 ORTHO05D007663 2.0e-19 101.3 211 34.1
CDE05G1058 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 7.2e-17 92.8 61 70.5
Haze_10677 Corylus avellana HOM05D006166 ORTHO05D007663 1.6e-08 65.1 44 65.9


User provided reference genes

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