Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g21460 Coffea canephora HOM05D002270 ORTHO05D002866 7.6e-35 149.8 70 100.0
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 9.7e-30 132.9 63 93.7
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 3.8e-26 120.9 63 84.1
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 3.8e-26 120.9 63 84.1
Solyc04g072260.3 Solanum lycopersicum HOM05D002270 ORTHO05D002866 3.8e-26 120.9 63 84.1
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 3.8e-26 120.9 63 84.1
Peaxi162Scf00226g00823 Petunia axillaris HOM05D002270 ORTHO05D002866 1.1e-25 119.4 63 84.1
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 7.2e-25 116.7 63 82.5
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 1.6e-24 115.5 63 82.5
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 1.6e-24 115.5 63 82.5
Cc11_g02690 Coffea canephora HOM05D002270 ORTHO05D002866 2.1e-24 115.2 65 86.2
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 4.7e-24 114.0 63 81.0
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 4.7e-24 114.0 63 81.0
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 4.7e-24 114.0 63 77.8
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 6.1e-24 113.6 63 79.4
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 7.9e-24 113.2 63 77.8
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 1.4e-23 112.5 63 79.4
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.8e-23 112.1 63 76.2
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 2.3e-23 111.7 63 79.4
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 2.3e-23 111.7 63 77.8
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 3.0e-23 111.3 63 76.2
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 3.9e-23 110.9 65 72.3
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 5.1e-23 110.5 63 76.2
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 8.8e-23 109.8 63 77.8
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 8.8e-23 109.8 63 76.2
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.5e-22 109.0 63 73.0
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 2.0e-22 108.6 63 74.6
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 2.0e-22 108.6 63 76.2
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 2.0e-22 108.6 63 77.8
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 4.4e-22 107.5 63 73.0
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 5.7e-22 107.1 63 73.0
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 7.4e-22 106.7 63 73.0
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 9.7e-22 106.3 63 71.4
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 9.7e-22 106.3 63 74.6
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 9.7e-22 106.3 63 76.2
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.2e-21 105.1 63 74.6
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 2.2e-21 105.1 63 74.6
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 2.2e-21 105.1 63 74.6
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 2.2e-21 105.1 63 69.8
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 2.2e-21 105.1 63 74.6
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 2.2e-21 105.1 63 74.6
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 3.7e-21 104.4 63 76.2
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 3.7e-21 104.4 63 69.8
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 3.7e-21 104.4 63 76.2
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 3.7e-21 104.4 63 73.0
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 4.8e-21 104.0 63 73.0
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 6.3e-21 103.6 63 69.8
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 6.3e-21 103.6 63 73.0
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 6.3e-21 103.6 63 71.4
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.1e-20 102.8 63 73.0
Lalb_Chr20g0113891 Lupinus albus HOM05D002270 ORTHO05D002866 1.1e-20 102.8 60 71.7
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.1e-20 102.8 63 73.0
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 1.1e-20 102.8 63 73.0
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 1.4e-20 102.4 63 71.4
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 1.8e-20 102.1 63 73.0
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 1.8e-20 102.1 63 71.4
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 2.4e-20 101.7 59 78.0
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 2.4e-20 101.7 63 71.4
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 2.4e-20 101.7 63 71.4
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 2.4e-20 101.7 63 71.4
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 2.4e-20 101.7 63 68.3
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 3.1e-20 101.3 63 66.7
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 3.1e-20 101.3 63 66.7
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 4.1e-20 100.9 63 66.7
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 4.1e-20 100.9 63 65.1
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 4.1e-20 100.9 63 68.3
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 5.3e-20 100.5 65 64.6
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 9.1e-20 99.8 63 65.1
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 1.5e-19 99.0 63 65.1
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 3.4e-19 97.8 63 65.1
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 4.5e-19 97.4 63 66.7
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 5.9e-19 97.1 63 63.5
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 5.9e-19 97.1 63 63.5
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 5.9e-19 97.1 63 63.5
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 7.7e-19 96.7 63 63.5
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 1.0e-18 96.3 63 65.1
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.0e-18 96.3 63 63.5
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 1.0e-18 96.3 63 66.7
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 1.3e-18 95.9 63 65.1
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.3e-18 95.9 63 65.1
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.3e-18 95.9 63 65.1
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 1.3e-18 95.9 63 63.5
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 1.7e-18 95.5 55 74.5
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 2.2e-18 95.1 63 61.9
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 2.9e-18 94.7 63 65.1
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 2.9e-18 94.7 63 61.9
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 2.9e-18 94.7 63 61.9
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 3.8e-18 94.4 63 63.5
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 3.8e-18 94.4 65 61.5
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 5.0e-18 94.0 63 63.5
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 5.0e-18 94.0 63 63.5
TPR.G23043 Trifolium pratense HOM05D002270 ORTHO05D002866 5.0e-18 94.0 57 71.9
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 6.5e-18 93.6 63 66.7
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 8.5e-18 93.2 63 63.5
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 8.5e-18 93.2 57 70.2
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 1.9e-17 92.0 63 63.5
C05p38660 Brassica napus HOM05D002270 ORTHO05D002866 5.5e-17 90.5 60 63.3
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 9.4e-17 89.7 63 65.1
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 1.2e-16 89.4 63 66.7
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 2.7e-16 88.2 65 60.0
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 2.7e-16 88.2 63 58.7
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 4.4e-14 80.9 55 61.8
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 4.8e-13 77.4 63 49.2
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 8.2e-13 76.6 63 49.2
MCO14G508 Micromonas commoda HOM05D002270 ORTHO05D002866 1.1e-12 76.3 61 50.8
PRCOL_00003697 Prasinoderma coloniale HOM05D002270 ORTHO05D002866 1.1e-12 76.3 61 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.4e-12 75.1 58 51.7
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 2.4e-12 75.1 63 49.2
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 1.2e-11 72.8 46 71.7
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 4.5e-11 70.9 63 46.0
SMO141G0091 Selaginella moellendorffii HOM05D002270 ORTHO05D002866 7.7e-11 70.1 55 60.0
Cre03.g161800 Chlamydomonas reinhardtii HOM05D002270 ORTHO05D002866 1.0e-10 69.7 61 47.5


User provided reference genes

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