Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 0.0e+00 1458.0 737 100.0
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1168.7 748 77.9
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 0.0e+00 1160.2 767 77.2
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 0.0e+00 1155.6 742 78.0
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1154.8 752 77.5
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1152.5 724 79.7
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 0.0e+00 1152.5 756 75.9
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 0.0e+00 1152.5 742 77.9
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1146.7 751 76.3
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 0.0e+00 1145.6 737 76.9
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1137.1 760 75.7
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1134.0 754 76.3
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1124.8 761 74.5
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1124.0 759 74.8
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1111.7 749 74.4
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1111.3 749 74.9
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1110.5 754 73.5
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1103.6 756 73.0
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 0.0e+00 1101.7 741 74.9
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1101.3 757 74.8
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1099.7 768 71.9
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 0.0e+00 1093.6 746 73.7
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 0.0e+00 1093.2 767 72.1
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1090.9 767 72.0
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1090.5 753 72.6
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1087.8 753 73.2
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 0.0e+00 1085.5 755 72.7
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1083.2 753 73.2
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1082.8 758 72.7
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 0.0e+00 1082.0 758 72.0
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1080.9 755 72.3
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 0.0e+00 1078.9 760 72.0
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1077.4 772 71.0
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 0.0e+00 1077.0 745 71.8
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 0.0e+00 1076.2 752 71.9
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 5.0e-312 1073.9 750 72.1
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 3.5e-311 1071.2 752 72.9
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 1.3e-310 1069.3 754 71.5
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 2.9e-310 1068.1 745 71.3
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 7.2e-309 1063.5 753 72.2
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 4.7e-308 1060.8 751 72.4
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 1.8e-307 1058.9 752 70.9
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 1.8e-307 1058.9 747 70.4
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 5.2e-307 1057.4 758 71.4
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 8.8e-307 1056.6 753 70.5
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.6e-306 1055.0 767 69.8
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 1.7e-305 1052.4 754 70.6
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.1e-304 1049.7 740 73.1
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 1.2e-303 1046.2 750 69.5
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.6e-303 1045.8 756 71.0
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 1.6e-303 1045.8 745 70.6
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 2.0e-303 1045.4 756 71.7
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 4.5e-303 1044.3 738 70.7
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 7.2e-301 1036.9 779 69.6
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 9.4e-301 1036.6 754 71.8
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 1.2e-298 1029.6 760 69.7
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 3.3e-298 1028.1 760 69.5
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 6.3e-297 1023.8 760 70.3
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 2.4e-296 1021.9 760 70.1
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 4.1e-296 1021.1 748 68.6
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 1.0e-294 1016.5 752 69.3
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 6.5e-294 1013.8 806 67.0
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 9.1e-288 993.4 767 67.1
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 2.7e-287 991.9 757 67.9
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 4.5e-287 991.1 744 67.1
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.6e-284 982.6 744 66.3
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 3.6e-284 981.5 744 66.4
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 2.2e-281 972.2 746 65.1
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 8.3e-281 970.3 746 65.0
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 8.3e-281 970.3 746 65.0
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 1.8e-280 969.1 745 65.8
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 5.4e-280 967.6 745 66.2
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 1.9e-277 959.1 770 63.1
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 1.5e-274 949.5 735 66.3
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 2.6e-274 948.7 744 64.0
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 7.5e-274 947.2 748 65.6
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 7.5e-274 947.2 751 63.8
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 3.2e-272 941.8 917 55.9
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 6.0e-271 937.6 751 64.7
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.2e-268 929.9 745 64.0
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 1.6e-268 929.5 514 85.6
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 2.1e-268 929.1 719 64.3
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 6.2e-268 927.5 510 85.9
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 1.5e-266 922.9 671 69.4
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 2.0e-266 922.5 741 64.6
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 2.9e-265 918.7 741 64.1
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 9.9e-258 893.6 510 83.5
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 5.1e-254 881.3 668 66.8
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.4e-251 872.5 746 63.8
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.2e-249 865.9 743 61.4
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.3e-246 856.7 637 70.3
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 5.6e-245 851.3 766 60.4
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.1e-240 837.0 752 60.6
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 5.4e-240 834.7 638 66.8
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 3.3e-237 825.5 735 58.8
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 2.9e-233 812.4 817 53.4
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 3.0e-230 802.4 755 56.0
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 7.1e-224 781.2 830 51.2
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 5.7e-213 745.0 728 55.8
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 7.4e-213 744.6 745 51.9
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 1.7e-209 733.4 740 54.9
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 3.7e-204 715.7 727 53.0
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.5e-202 710.3 731 52.5
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.9e-201 706.1 735 52.7
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.2e-200 702.6 735 52.1
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 1.7e-196 690.3 728 50.4
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 2.1e-191 673.3 778 45.8
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 8.3e-172 608.2 443 72.0
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 2.1e-167 593.6 334 83.2
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.2e-132 477.2 410 60.0
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 4.9e-124 449.5 453 55.2
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.9e-104 384.4 217 81.6
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 1.1e-102 378.6 238 77.3
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 5.9e-93 346.3 182 91.8
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 2.2e-92 344.4 687 33.9
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 7.2e-91 339.3 691 32.7
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 1.4e-83 315.1 353 53.8
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 5.3e-78 296.6 683 31.6
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 1.5e-64 251.9 276 55.1
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.0e-61 241.5 129 87.6
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 1.7e-55 221.9 236 56.4
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 3.7e-55 220.7 236 55.9
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.1e-54 219.2 167 65.9
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 5.0e-52 210.3 121 84.3
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 2.6e-48 198.0 110 82.7
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 4.9e-47 193.7 134 70.1
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 1.2e-40 172.6 210 50.5
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 1.4e-38 165.6 178 54.5
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 1.2e-29 136.0 96 70.8
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 4.6e-29 134.0 161 49.7
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 7.3e-27 126.7 148 45.3
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 2.1e-26 125.2 119 60.5
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.0e-20 104.8 55 85.5
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 2.8e-18 98.2 62 74.2
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 4.0e-17 94.4 66 71.2
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 2.2e-15 88.6 148 41.2
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 1.1e-14 86.3 518 20.3
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 1.5e-11 75.9 577 20.5
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 4.4e-08 64.3 88 45.5
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 1.3e-07 62.8 59 50.8
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 1.9e-06 58.9 108 37.0
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 5.4e-06 57.4 112 37.5
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 5.4e-06 57.4 112 37.5
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 7.1e-06 57.0 81 42.0


User provided reference genes

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