Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g16650 Coffea canephora HOM05D004759 ORTHO05D005722 2.4e-133 478.8 238 100.0
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 6.4e-57 224.9 145 84.1
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 5.4e-48 195.3 164 65.2
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 5.4e-48 195.3 145 71.0
Peaxi162Scf00362g01041 Petunia axillaris HOM05D004759 ORTHO05D005722 1.2e-47 194.1 145 69.0
Solyc01g111040.4 Solanum lycopersicum HOM05D004759 ORTHO05D005722 2.1e-47 193.4 145 70.3
Sopen01g053100 Solanum pennellii HOM05D004759 ORTHO05D005722 3.5e-47 192.6 145 70.3
Duzib248G0603 Durio zibethinus HOM05D004759 ORTHO05D005722 1.1e-45 187.6 149 67.1
Glyma.11G097500 Glycine max HOM05D004759 ORTHO05D005722 1.5e-45 187.2 146 65.8
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 1.5e-45 187.2 145 67.6
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 1.9e-45 186.8 146 65.8
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 1.9e-45 186.8 145 67.6
Eucgr.I01368 Eucalyptus grandis HOM05D004759 ORTHO05D005722 1.9e-45 186.8 145 67.6
FvH4_2g02210 Fragaria vesca HOM05D004759 ORTHO05D005722 7.3e-45 184.9 143 68.5
FAN15G1889 Fragaria x ananassa HOM05D004759 ORTHO05D005722 7.3e-45 184.9 143 68.5
FAN24G2027 Fragaria x ananassa HOM05D004759 ORTHO05D005722 7.3e-45 184.9 143 68.5
Glyma.12G023500 Glycine max HOM05D004759 ORTHO05D005722 7.3e-45 184.9 145 65.5
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 9.5e-45 184.5 145 65.5
MELO3C013383.2 Cucumis melo HOM05D004759 ORTHO05D005722 9.5e-45 184.5 163 60.1
TPR.G17153 Trifolium pratense HOM05D004759 ORTHO05D005722 9.5e-45 184.5 145 65.5
Nitab4.5_0000283g0200 Nicotiana tabacum HOM05D004759 ORTHO05D005722 1.2e-44 184.1 145 69.0
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.6e-44 183.7 145 66.2
Actinidia00585 Actinidia chinensis HOM05D004759 ORTHO05D005722 2.1e-44 183.3 145 65.5
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 2.1e-44 183.3 145 63.4
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 2.8e-44 183.0 145 64.8
QL11p047309 Quercus lobata HOM05D004759 ORTHO05D005722 2.8e-44 183.0 144 67.4
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 6.2e-44 181.8 145 64.8
ClCG02G004370 Citrullus lanatus HOM05D004759 ORTHO05D005722 6.2e-44 181.8 155 60.6
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 6.2e-44 181.8 145 66.2
Manes.04G079000 Manihot esculenta HOM05D004759 ORTHO05D005722 6.2e-44 181.8 145 64.1
VMungo1127G1183 Vigna mungo HOM05D004759 ORTHO05D005722 6.2e-44 181.8 145 65.5
Manes.11G078000 Manihot esculenta HOM05D004759 ORTHO05D005722 8.1e-44 181.4 160 59.4
CsaV3_7G000740 Cucumis sativus L. HOM05D004759 ORTHO05D005722 1.1e-43 181.0 163 58.9
FAN20G1238 Fragaria x ananassa HOM05D004759 ORTHO05D005722 1.1e-43 181.0 143 67.8
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 1.1e-43 181.0 145 66.9
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 1.1e-43 181.0 145 64.8
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 1.4e-43 180.6 146 65.1
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 1.4e-43 180.6 163 59.5
TAR376G0227 Trochodendron aralioides HOM05D004759 ORTHO05D005722 1.4e-43 180.6 145 62.8
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 1.8e-43 180.3 145 64.1
Phvul.011G025600 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 2.3e-43 179.9 145 64.8
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 2.3e-43 179.9 145 63.4
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 4.0e-43 179.1 145 62.8
Atru.chr5.3204 Acer truncatum HOM05D004759 ORTHO05D005722 5.2e-43 178.7 163 56.4
FAN27G2697 Fragaria x ananassa HOM05D004759 ORTHO05D005722 5.2e-43 178.7 143 67.1
Glyma.06G005900 Glycine max HOM05D004759 ORTHO05D005722 5.2e-43 178.7 144 64.6
RcHm_v2.0_Chr6g0245891 Rosa chinensis HOM05D004759 ORTHO05D005722 5.2e-43 178.7 143 66.4
Sed0015502 Sechium edule HOM05D004759 ORTHO05D005722 5.2e-43 178.7 155 60.0
CiPaw.05G076100 Carya illinoinensis HOM05D004759 ORTHO05D005722 6.8e-43 178.3 146 62.3
Duzib132G0429 Durio zibethinus HOM05D004759 ORTHO05D005722 6.8e-43 178.3 145 64.1
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 6.8e-43 178.3 145 65.5
Sabra04G0112000 Salix brachista HOM05D004759 ORTHO05D005722 6.8e-43 178.3 144 64.6
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 1.2e-42 177.6 145 62.1
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 1.2e-42 177.6 145 64.1
Lalb_Chr19g0139561 Lupinus albus HOM05D004759 ORTHO05D005722 1.5e-42 177.2 140 65.7
Prupe.8G158800 Prunus persica HOM05D004759 ORTHO05D005722 1.5e-42 177.2 143 65.0
Lj1g0004015 Lotus japonicus HOM05D004759 ORTHO05D005722 2.0e-42 176.8 145 62.8
Potri.004G166900 Populus trichocarpa HOM05D004759 ORTHO05D005722 2.6e-42 176.4 144 63.9
SalBow6G6339 Salvia bowleyana HOM05D004759 ORTHO05D005722 2.6e-42 176.4 145 65.5
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 3.4e-42 176.0 146 63.0
arahy.Tifrunner.gnm1.ann1.8G8R7R Arachis hypogaea HOM05D004759 ORTHO05D005722 4.4e-42 175.6 140 64.3
Rhsim11G0187000 Rhododendron simsii HOM05D004759 ORTHO05D005722 4.4e-42 175.6 145 65.5
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 4.4e-42 175.6 145 64.8
arahy.Tifrunner.gnm1.ann1.B05S7J Arachis hypogaea HOM05D004759 ORTHO05D005722 7.5e-42 174.9 140 64.3
Gohir.D12G032200 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.3e-41 174.1 145 62.8
VMungo1309G1106 Vigna mungo HOM05D004759 ORTHO05D005722 1.7e-41 173.7 144 62.5
Duzib052G1250 Durio zibethinus HOM05D004759 ORTHO05D005722 2.2e-41 173.3 140 64.3
MD05G1114400 Malus domestica HOM05D004759 ORTHO05D005722 2.2e-41 173.3 143 64.3
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 2.9e-41 172.9 145 62.1
vmacro02240 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 2.9e-41 172.9 145 63.4
vmacro22691 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 2.9e-41 172.9 145 63.4
Glyma.04G006200 Glycine max HOM05D004759 ORTHO05D005722 4.9e-41 172.2 140 63.6
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 6.4e-41 171.8 160 56.9
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 1.9e-40 170.2 145 60.7
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 2.4e-40 169.9 146 62.3
MD10G1116400 Malus domestica HOM05D004759 ORTHO05D005722 2.4e-40 169.9 143 63.6
Phvul.009G000900 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 2.4e-40 169.9 140 61.4
Actinidia20479 Actinidia chinensis HOM05D004759 ORTHO05D005722 4.1e-40 169.1 145 62.1
Gohir.A12G040100 Gossypium hirsutum HOM05D004759 ORTHO05D005722 4.1e-40 169.1 145 61.4
Sed0015287 Sechium edule HOM05D004759 ORTHO05D005722 5.4e-40 168.7 155 57.4
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 7.1e-40 168.3 145 62.1
MSTRG.27666 Avicennia marina HOM05D004759 ORTHO05D005722 1.2e-39 167.5 144 60.4
Hma1.2p1_0032F.1_g019720 Hydrangea macrophylla HOM05D004759 ORTHO05D005722 1.2e-39 167.5 145 62.8
Ca_15318_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 1.6e-39 167.2 142 61.3
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 2.7e-39 166.4 162 55.6
Carub.0007s0066 Capsella rubella HOM05D004759 ORTHO05D005722 2.7e-39 166.4 146 59.6
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 2.7e-39 166.4 145 61.4
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 3.5e-39 166.0 146 60.3
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 3.5e-39 166.0 146 61.6
TWI31G1308 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 3.5e-39 166.0 145 58.6
BcaNung01966 Brassica carinata HOM05D004759 ORTHO05D005722 4.6e-39 165.6 162 56.8
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 6.0e-39 165.2 145 61.4
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 6.0e-39 165.2 145 61.4
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 6.0e-39 165.2 145 61.4
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 6.0e-39 165.2 145 61.4
Sed0012827 Sechium edule HOM05D000600 ORTHO05D000432 6.0e-39 165.2 140 60.0
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 7.8e-39 164.9 145 62.1
MSTRG.5434 Avicennia marina HOM05D004759 ORTHO05D005722 1.0e-38 164.5 144 60.4
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 1.0e-38 164.5 145 59.3
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 1.0e-38 164.5 164 55.5
Medtr3g117680 Medicago truncatula HOM05D004759 ORTHO05D005722 1.3e-38 164.1 142 60.6
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 1.7e-38 163.7 145 59.3
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 5.1e-38 162.2 144 58.3
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 6.6e-38 161.8 140 60.7
MSTRG.16864 Avicennia marina HOM05D004759 ORTHO05D005722 6.6e-38 161.8 144 56.9
TPR.G38567 Trifolium pratense HOM05D004759 ORTHO05D005722 6.6e-38 161.8 142 59.2
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 8.6e-38 161.4 144 58.3
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 1.1e-37 161.0 144 57.6
arahy.Tifrunner.gnm1.ann1.T5CB16 Arachis hypogaea HOM05D004759 ORTHO05D005722 1.5e-37 160.6 140 60.0
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 2.5e-37 159.8 152 55.3
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 2.5e-37 159.8 144 54.9
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 4.3e-37 159.1 145 61.4
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 2.8e-36 156.4 161 54.7
arahy.Tifrunner.gnm1.ann1.ZR7FTB Arachis hypogaea HOM05D004759 ORTHO05D005722 8.1e-36 154.8 128 63.3
Psat5g003440 Pisum sativum HOM05D004759 ORTHO05D005722 4.0e-35 152.5 142 57.0
TAR628G0309 Trochodendron aralioides HOM05D004759 ORTHO05D005722 2.6e-34 149.8 152 55.3
ATR0481G015 Amborella trichopoda HOM05D004759 ORTHO05D005722 9.9e-34 147.9 146 50.7
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 6.4e-33 145.2 144 54.2
Os10g0177200 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 8.4e-33 144.8 145 52.4
CDE02G2774 Ceratophyllum demersum HOM05D004759 ORTHO05D005722 3.2e-32 142.9 164 48.8
Oeu055645.1 Olea europaea HOM05D004759 ORTHO05D005722 7.1e-32 141.7 145 49.7
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 3.0e-30 136.3 145 51.0
Nitab4.5_0000980g0350 Nicotiana tabacum HOM05D004759 ORTHO05D005722 2.5e-29 133.3 145 55.2
Nn5g30165 Nelumbo nucifera HOM05D004759 ORTHO05D005722 1.2e-28 131.0 123 55.3
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 2.1e-28 130.2 143 49.7
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 2.8e-28 129.8 139 51.8
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 8.1e-28 128.3 144 47.2
arahy.Tifrunner.gnm1.ann1.R4GM9V Arachis hypogaea HOM05D004759 ORTHO05D005722 1.8e-27 127.1 140 49.3
SHI05655 Sapria himalayana HOM05D004759 ORTHO05D005722 1.8e-27 127.1 172 43.0
SEGI_27774 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 4.0e-27 125.9 140 47.9
unitig_21.g20808 Utricularia gibba HOM05D004759 ORTHO05D005722 9.0e-27 124.8 152 48.0
SEGI_06358 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 2.0e-26 123.6 140 47.1
HPP92_007135 Vanilla planifolia HOM05D004759 ORTHO05D005722 1.6e-23 114.0 144 45.1
Zm00001eb010730 Zea mays HOM05D004759 ORTHO05D005722 1.6e-23 114.0 144 44.4
Mapoly0103s0051 Marchantia polymorpha HOM05D004759 ORTHO05D005722 2.7e-23 113.2 158 36.7
Nn1g05877 Nelumbo nucifera HOM05D004759 ORTHO05D005722 3.5e-23 112.8 145 46.2
DCAR_026360 Daucus carota HOM05D004759 ORTHO05D005722 2.4e-19 100.1 89 60.7
SEGI_21972 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 2.4e-19 100.1 140 35.7
Ciclev10030375m.g Citrus clementina HOM05D004759 ORTHO05D005722 6.9e-19 98.6 133 43.6
HPP92_003533 Vanilla planifolia HOM05D004759 ORTHO05D005722 1.9e-16 90.5 161 37.9
SEGI_16256 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 3.9e-14 82.8 124 38.7
PSO675G1610 Papaver somniferum HOM05D004759 ORTHO05D005722 1.1e-13 81.3 152 37.5
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 1.1e-13 81.3 144 31.9
Dinv41981 Davidia involucrata HOM05D004759 ORTHO05D005722 5.6e-13 79.0 58 67.2
PSO541G2336 Papaver somniferum HOM05D004759 ORTHO05D005722 5.6e-13 79.0 153 37.3
Pp3c5_21520 Physcomitrium patens HOM05D004759 ORTHO05D005722 2.6e-10 70.1 91 41.8
Oeu046121.1 Olea europaea HOM05D004759 ORTHO05D005722 1.4e-08 64.3 47 70.2
Cpa.g.sc37.205 Carica papaya HOM05D004759 ORTHO05D005722 7.1e-08 62.0 45 71.1


User provided reference genes

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