Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 3966.4 2050 100.0
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2429.1 2053 63.0
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2286.5 2049 59.3
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 2214.1 2045 58.0
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 2213.3 2068 58.2
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2154.8 2069 56.5
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2140.9 2068 56.3
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 2132.8 2034 56.3
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2119.4 2032 57.0
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2113.2 2038 56.3
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 2104.3 2056 55.6
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2095.9 2121 54.5
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 2087.0 2043 55.1
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2085.5 2063 55.4
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2070.4 2042 55.7
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2062.0 2036 54.9
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2051.9 2033 54.2
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2041.9 2043 55.0
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2038.5 2041 55.7
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2035.8 2038 53.6
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 2034.6 2224 51.6
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2033.1 2036 53.5
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2013.0 2031 53.6
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2008.8 2039 54.5
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1984.9 2041 54.2
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1982.2 2043 54.3
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1980.3 2043 54.3
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1974.9 2029 52.6
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1973.4 2033 52.7
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1968.4 2133 51.0
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1955.6 2050 52.5
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1932.1 1888 55.7
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1911.0 2035 51.9
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1910.6 2034 52.0
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1908.3 2255 49.1
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1891.7 2028 51.9
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1880.9 2035 50.9
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1880.5 2041 50.8
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1873.2 2038 50.9
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1870.9 2030 50.8
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1869.7 2094 49.9
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1859.7 2064 50.3
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1857.4 2037 51.0
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1855.9 2069 50.0
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1852.0 2035 50.0
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1850.1 2033 51.3
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1832.4 2111 48.9
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1827.0 1848 53.5
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1808.9 2035 49.1
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1798.1 2035 48.9
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1793.9 2029 50.7
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1792.7 2029 48.9
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1783.5 2036 49.3
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1782.7 2076 48.9
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1780.8 2030 49.4
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1771.9 2160 47.4
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1744.2 2075 47.5
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1739.2 2047 47.8
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1730.7 2037 47.5
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1712.6 2089 47.0
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1711.0 2030 46.8
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1710.3 2006 47.9
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1708.3 2028 47.8
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1708.0 2033 47.5
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1706.4 2044 46.7
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1704.5 2044 46.8
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1704.1 2044 46.8
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1701.0 2044 47.0
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1699.1 2031 46.8
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1693.3 2029 46.9
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1685.2 2039 48.5
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1618.2 2069 45.3
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1593.2 2060 46.0
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1572.0 1788 49.0
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1528.8 2028 44.0
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1469.5 2361 40.7
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1466.1 2072 42.6
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1342.4 1448 51.5
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1340.9 1299 56.5
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1303.5 1455 50.5
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1301.6 2077 39.8
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1245.7 1557 47.2
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1223.8 1412 50.6
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 0.0e+00 1137.5 1261 50.8
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.4e-309 1066.6 1086 53.5
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.2e-283 980.3 1282 44.7
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 2.0e-279 967.2 2131 31.3
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.7e-267 927.5 797 60.4
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 5.4e-253 879.4 2144 30.8
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.7e-235 821.2 614 67.8
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 5.6e-234 816.2 1020 45.3
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 8.3e-222 775.8 2157 28.1
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 8.9e-216 755.7 650 60.5
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 1.7e-206 724.9 770 54.2
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 3.1e-200 704.1 1390 35.8
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 6.0e-188 663.3 741 49.3
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 2.5e-181 641.3 728 50.1
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.8e-179 635.2 900 41.4
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.3e-178 630.6 1503 30.7
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 6.5e-174 616.7 738 45.4
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 3.5e-172 610.9 477 64.8
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 2.7e-156 558.1 730 42.6
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 5.7e-146 523.9 796 42.7
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 8.5e-142 510.0 514 54.1
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 9.2e-128 463.4 2249 23.9
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.8e-126 458.0 775 37.5
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 3.9e-118 431.4 506 47.6
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 4.0e-115 421.4 336 62.2
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.2e-114 419.9 434 53.5
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 9.8e-106 390.2 386 52.6
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 6.0e-103 380.9 650 36.8
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.9e-101 375.9 603 38.6
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.2e-90 340.1 739 32.9
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.2e-82 313.5 641 32.1
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.0e-75 288.5 200 70.0
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.9e-69 269.6 231 58.9
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 1.9e-53 216.5 179 62.6
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 3.4e-50 205.7 475 28.6
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 1.8e-46 193.4 209 50.2
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.8e-43 183.3 164 56.1
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.0e-41 177.6 140 63.6
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 6.5e-41 174.9 361 33.8
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 1.1e-37 164.1 133 60.9
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.3e-36 160.6 101 79.2
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.4e-35 156.4 586 25.4
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.0e-34 153.3 140 56.4
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 1.7e-28 133.7 92 71.7
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.7e-26 126.3 405 28.6
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 4.5e-26 125.6 585 25.5
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.9e-25 122.9 146 47.9
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.1e-24 120.9 92 62.0
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 2.7e-23 116.3 124 46.8
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 6.8e-22 111.7 152 44.1
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 2.6e-21 109.8 97 53.6
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.6e-21 109.8 290 28.6
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 4.4e-21 109.0 91 56.0
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 4.5e-18 99.0 140 40.0
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.0e-17 97.8 89 55.1
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.8e-17 95.9 129 42.6
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 6.5e-17 95.1 148 39.9
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 1.4e-14 87.4 86 51.2
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.8e-14 87.0 122 38.5
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 8.8e-14 84.7 157 32.5
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 1.5e-13 84.0 69 60.9
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 3.4e-13 82.8 162 34.0
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 7.5e-13 81.6 109 46.8
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 7.5e-13 81.6 110 42.7
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 9.8e-13 81.3 60 65.0
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 2.8e-12 79.7 59 59.3
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.4e-11 77.4 167 31.7
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 3.1e-11 76.3 120 37.5
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 9.2e-11 74.7 71 49.3
Psat0s2087g0160 Pisum sativum HOM05D001944 ORTHO05D002405 1.1e-08 67.8 70 51.4
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 3.3e-08 66.2 59 54.2
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 4.3e-08 65.9 98 33.7
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.6e-07 63.9 230 27.4
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.7e-07 62.4 72 50.0
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 1.0e-06 61.2 45 62.2
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 1.0e-06 61.2 106 36.8
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 1.8e-06 60.5 52 51.9


User provided reference genes

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