Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g15700 Coffea canephora HOM05D001195 ORTHO05D029068 3.1e-30 134.4 66 100.0
Cc02_g15690 Coffea canephora HOM05D001195 ORTHO05D001138 1.0e-20 102.8 54 94.4
Dinv32331 Davidia involucrata HOM05D001195 ORTHO05D001138 1.0e-17 92.8 53 84.9
Atru.chr10.1552 Acer truncatum HOM05D001195 ORTHO05D001138 1.4e-17 92.4 53 83.0
Manes.16G042500 Manihot esculenta HOM05D001195 ORTHO05D001138 5.2e-17 90.5 54 79.6
CSS0009860 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 8.9e-17 89.7 54 77.8
Dinv12743 Davidia involucrata HOM05D001195 ORTHO05D001138 8.9e-17 89.7 53 81.1
Duzib192G1074 Durio zibethinus HOM05D001195 ORTHO05D001138 1.2e-16 89.4 54 79.6
Duzib235G0195 Durio zibethinus HOM05D001195 ORTHO05D001138 1.2e-16 89.4 54 79.6
Gohir.D10G034800 Gossypium hirsutum HOM05D001195 ORTHO05D001138 1.2e-16 89.4 54 77.8
CSS0006950 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 1.5e-16 89.0 54 75.9
CSS0029612 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 1.5e-16 89.0 54 75.9
Gohir.A10G034100 Gossypium hirsutum HOM05D001195 ORTHO05D001138 1.5e-16 89.0 53 77.4
Cfa001104 Carpinus fangiana HOM05D001195 ORTHO05D001138 2.6e-16 88.2 54 77.8
Glyma.15G085900 Glycine max HOM05D001195 ORTHO05D001138 2.6e-16 88.2 54 79.6
Peaxi162Scf00112g00048 Petunia axillaris HOM05D001195 ORTHO05D001138 2.6e-16 88.2 54 77.8
Thecc.06G164600 Theobroma cacao HOM05D001195 ORTHO05D001138 3.4e-16 87.8 54 77.8
MSTRG.13236 Avicennia marina HOM05D001195 ORTHO05D001138 4.4e-16 87.4 53 79.2
EL10Ac8g19988 Beta vulgaris HOM05D001195 ORTHO05D001138 4.4e-16 87.4 54 77.8
CAN.G411.42 Capsicum annuum HOM05D001195 ORTHO05D001138 4.4e-16 87.4 54 77.8
CiPaw.09G136800 Carya illinoinensis HOM05D001195 ORTHO05D001138 4.4e-16 87.4 54 77.8
Glyma.13G226500 Glycine max HOM05D001195 ORTHO05D001138 4.4e-16 87.4 54 77.8
Solyc02g072090.2 Solanum lycopersicum HOM05D001195 ORTHO05D001138 4.4e-16 87.4 54 77.8
Sopen02g021050 Solanum pennellii HOM05D001195 ORTHO05D001138 4.4e-16 87.4 54 77.8
TWI09G0472 Tripterygium wilfordii HOM05D001195 ORTHO05D001138 4.4e-16 87.4 54 77.8
Actinidia35607 Actinidia chinensis HOM05D001195 ORTHO05D001138 5.7e-16 87.0 54 74.1
arahy.Tifrunner.gnm1.ann1.GAN3W4 Arachis hypogaea HOM05D001195 ORTHO05D001138 5.7e-16 87.0 54 77.8
CiPaw.10G103700 Carya illinoinensis HOM05D001195 ORTHO05D001138 5.7e-16 87.0 54 77.8
AUR62041813 Chenopodium quinoa HOM05D001195 ORTHO05D001138 5.7e-16 87.0 54 77.8
COL.COLO4_31221 Corchorus olitorius HOM05D001195 ORTHO05D001138 5.7e-16 87.0 54 75.9
Phvul.006G172900 Phaseolus vulgaris HOM05D001195 ORTHO05D001138 5.7e-16 87.0 54 77.8
PGR031G3259 Punica granatum HOM05D001195 ORTHO05D001138 5.7e-16 87.0 53 75.5
TWI53G0488 Tripterygium wilfordii HOM05D001195 ORTHO05D001138 5.7e-16 87.0 54 79.6
MD00G1008200 Malus domestica HOM05D001195 ORTHO05D001138 7.5e-16 86.7 53 77.4
Potri.011G071300 Populus trichocarpa HOM05D001195 ORTHO05D001138 7.5e-16 86.7 54 75.9
Sabra11G0055900 Salix brachista HOM05D001195 ORTHO05D001138 7.5e-16 86.7 54 75.9
Sabra11G0059000 Salix brachista HOM05D001195 ORTHO05D001138 7.5e-16 86.7 54 75.9
VMungo0540G0601 Vigna mungo HOM05D001195 ORTHO05D001138 7.5e-16 86.7 54 77.8
GSVIVG01021264001 Vitis vinifera HOM05D001195 ORTHO05D001138 7.5e-16 86.7 54 75.9
Lalb_Chr15g0086351 Lupinus albus HOM05D001195 ORTHO05D001138 9.8e-16 86.3 54 75.9
Prupe.4G067700 Prunus persica HOM05D001195 ORTHO05D001138 9.8e-16 86.3 54 77.8
Rhsim13G0187200 Rhododendron simsii HOM05D001195 ORTHO05D001138 1.3e-15 85.9 54 77.8
vmacro04000 Vaccinium macrocarpon HOM05D001195 ORTHO05D001138 1.3e-15 85.9 54 77.8
Gorai.011G036600 Gossypium raimondii HOM05D001195 ORTHO05D001138 1.7e-15 85.5 52 75.0
Manes.17G059900 Manihot esculenta HOM05D001195 ORTHO05D001138 1.7e-15 85.5 54 75.9
Potri.004G061700 Populus trichocarpa HOM05D001195 ORTHO05D001138 1.7e-15 85.5 54 75.9
ECA234G3008 Erigeron canadensis HOM05D001195 ORTHO05D001138 2.2e-15 85.1 52 78.8
Lj1A1176T61 Lonicera japonica HOM05D001195 ORTHO05D001138 2.2e-15 85.1 54 74.1
PGSC0003DMG400028463 Solanum tuberosum HOM05D001195 ORTHO05D001138 2.2e-15 85.1 54 75.9
Cpa.g.sc7.115 Carica papaya HOM05D001195 ORTHO05D001138 2.8e-15 84.7 52 76.9
Ca_00474_v3 Cicer arietinum L. HOM05D001195 ORTHO05D001138 2.8e-15 84.7 54 75.9
Lalb_Chr18g0054791 Lupinus albus HOM05D001195 ORTHO05D001138 2.8e-15 84.7 54 75.9
Lalb_Chr21g0313581 Lupinus albus HOM05D001195 ORTHO05D029068 2.8e-15 84.7 54 75.9
Ciclev10014075m.g Citrus clementina HOM05D001195 ORTHO05D001138 3.7e-15 84.3 54 74.1
Oeu043121.2 Olea europaea HOM05D001195 ORTHO05D001138 3.7e-15 84.3 54 77.8
Duzib160G0611 Durio zibethinus HOM05D001195 ORTHO05D001138 4.9e-15 84.0 54 74.1
MD10G1274700 Malus domestica HOM05D001195 ORTHO05D001138 4.9e-15 84.0 53 75.5
TAR624G1016 Trochodendron aralioides HOM05D001195 ORTHO05D001138 4.9e-15 84.0 52 76.9
CSS0020747 Camellia sinensis var. sinensis HOM05D001195 ORTHO05D001138 8.3e-15 83.2 50 76.0
Lsat_1_v5_gn_4_48381 Lactuca sativa HOM05D001195 ORTHO05D001138 1.1e-14 82.8 54 74.1
RcHm_v2.0_Chr5g0011921 Rosa chinensis HOM05D001195 ORTHO05D001138 1.4e-14 82.4 54 74.1
Eucgr.D00435 Eucalyptus grandis HOM05D001195 ORTHO05D001138 1.8e-14 82.0 54 72.2
Gohir.A09G074900 Gossypium hirsutum HOM05D001195 ORTHO05D001138 2.4e-14 81.6 53 73.6
Sed0022889 Sechium edule HOM05D001195 ORTHO05D001138 2.4e-14 81.6 48 79.2
CANSAT35G1100 Cannabis sativa HOM05D001195 ORTHO05D001138 3.1e-14 81.3 51 74.5
Haze_05390 Corylus avellana HOM05D001195 ORTHO05D001138 3.1e-14 81.3 64 67.2
MELO3C007194.2 Cucumis melo HOM05D001195 ORTHO05D001138 3.1e-14 81.3 48 81.2
CsaV3_6G051090 Cucumis sativus L. HOM05D001195 ORTHO05D001138 3.1e-14 81.3 48 81.2
FAN21G1686 Fragaria x ananassa HOM05D001195 ORTHO05D001138 3.1e-14 81.3 54 72.2
Sc05g0006830 Simmondsia chinensis HOM05D001195 ORTHO05D001138 3.1e-14 81.3 54 72.2
FvH4_3g07230 Fragaria vesca HOM05D001195 ORTHO05D001138 4.1e-14 80.9 53 71.7
Gohir.D09G074700 Gossypium hirsutum HOM05D001195 ORTHO05D001138 4.1e-14 80.9 53 73.6
Gorai.006G089800 Gossypium raimondii HOM05D001195 ORTHO05D001138 4.1e-14 80.9 53 73.6
TAR626G1395 Trochodendron aralioides HOM05D001195 ORTHO05D001138 4.1e-14 80.9 54 74.1
DCAR_027972 Daucus carota HOM05D001195 ORTHO05D001138 5.4e-14 80.5 54 72.2
Migut.H01406 Erythranthe guttata HOM05D001195 ORTHO05D001138 5.4e-14 80.5 54 72.2
Thhalv10024266m.g Eutrema salsugineum HOM05D001195 ORTHO05D001138 5.4e-14 80.5 54 75.9
FAN25G2492 Fragaria x ananassa HOM05D001195 ORTHO05D001138 7.0e-14 80.1 54 70.4
Medtr2g017980 Medicago truncatula HOM05D001195 ORTHO05D001138 7.0e-14 80.1 54 72.2
SalBow7G4630 Salvia bowleyana HOM05D001195 ORTHO05D001138 7.0e-14 80.1 53 71.7
AT4G18820 Arabidopsis thaliana HOM05D001195 ORTHO05D001138 9.2e-14 79.7 54 77.8
FAN11G0143 Fragaria x ananassa HOM05D001195 ORTHO05D001138 9.2e-14 79.7 54 70.4
Gorai.010G240900 Gossypium raimondii HOM05D001195 ORTHO05D001138 1.2e-13 79.3 54 74.1
ClCG01G023950 Citrullus lanatus HOM05D001195 ORTHO05D001138 1.6e-13 79.0 48 77.1
Gohir.D06G206500 Gossypium hirsutum HOM05D001195 ORTHO05D001138 1.6e-13 79.0 53 73.6
PSO170G2433 Papaver somniferum HOM05D001195 ORTHO05D001138 1.6e-13 79.0 54 70.4
Sed0001864 Sechium edule HOM05D001195 ORTHO05D001138 1.6e-13 79.0 47 78.7
TPR.G4468 Trifolium pratense HOM05D001195 ORTHO05D001138 1.6e-13 79.0 54 72.2
BcaC09g51447 Brassica carinata HOM05D001195 ORTHO05D001138 2.0e-13 78.6 54 75.9
C01p12860 Brassica napus HOM05D001195 ORTHO05D001138 2.0e-13 78.6 54 75.9
BolC1t01262H Brassica oleracea HOM05D001195 ORTHO05D001138 2.0e-13 78.6 54 75.9
AL7G35420 Arabidopsis lyrata HOM05D001195 ORTHO05D001138 2.7e-13 78.2 54 75.9
HanXRQChr17g0556931 Helianthus annuus HOM05D001195 ORTHO05D001138 5.9e-13 77.0 54 70.4
Psat1g194560 Pisum sativum HOM05D001195 ORTHO05D001138 5.9e-13 77.0 53 71.7
SalBow7G4755 Salvia bowleyana HOM05D001195 ORTHO05D001138 5.9e-13 77.0 52 71.2
A01p10850 Brassica napus HOM05D001195 ORTHO05D001138 7.8e-13 76.6 54 74.1
BraA01t01032Z Brassica rapa HOM05D001195 ORTHO05D001138 7.8e-13 76.6 54 74.1
Sp7g17530 Schrenkiella parvula HOM05D001195 ORTHO05D001138 7.8e-13 76.6 54 74.1
AT5G45720 Arabidopsis thaliana HOM05D001195 ORTHO05D001138 1.3e-12 75.9 54 74.1
Carub.0007s2241 Capsella rubella HOM05D001195 ORTHO05D001138 2.3e-12 75.1 54 74.1
Carub.0008s0227 Capsella rubella HOM05D001195 ORTHO05D001138 2.3e-12 75.1 54 74.1
Gohir.A06G199200 Gossypium hirsutum HOM05D001195 ORTHO05D001138 2.3e-12 75.1 54 72.2
BcaNung04862 Brassica carinata HOM05D001195 ORTHO05D001138 2.9e-12 74.7 54 72.2
MBI07_g00451_MAGBIO Magnolia biondii HOM05D001195 ORTHO05D001138 3.9e-12 74.3 54 66.7
Actinidia39524 Actinidia chinensis HOM05D001195 ORTHO05D001138 6.6e-12 73.6 43 79.1
Aa31LG9G7340 Aethionema arabicum HOM05D001195 ORTHO05D001138 1.1e-11 72.8 56 69.6
Aqoxy4G00234 Aquilegia oxysepala HOM05D001195 ORTHO05D001138 1.9e-11 72.0 54 66.7
CARHR225680 Cardamine hirsuta HOM05D001195 ORTHO05D001138 3.3e-11 71.2 54 72.2
AL8G12920 Arabidopsis lyrata HOM05D001195 ORTHO05D001138 4.3e-11 70.9 53 69.8
CARHR176250 Cardamine hirsuta HOM05D001195 ORTHO05D001138 5.6e-11 70.5 54 68.5
Nn6g34481 Nelumbo nucifera HOM05D001195 ORTHO05D001138 5.6e-11 70.5 51 68.6
THA.LOC104798436 Tarenaya hassleriana HOM05D001195 ORTHO05D001138 5.6e-11 70.5 54 68.5
Nn3g21089 Nelumbo nucifera HOM05D001195 ORTHO05D001138 9.5e-11 69.7 51 68.6
HPP92_022985 Vanilla planifolia HOM05D001195 ORTHO05D001138 9.5e-11 69.7 53 66.0
Lj6g0025795 Lotus japonicus HOM05D001195 ORTHO05D001138 3.6e-10 67.8 43 74.4
Zm00001eb004960 Zea mays HOM05D001195 ORTHO05D029068 1.8e-09 65.5 52 65.4
Zm00001eb057220 Zea mays HOM05D001195 ORTHO05D029068 1.8e-09 65.5 52 65.4
Zm00001eb293320 Zea mays HOM05D001195 ORTHO05D001138 2.3e-09 65.1 54 63.0
MBI06_g18694_MAGBIO Magnolia biondii HOM05D000215 ORTHO05D002239 4.0e-09 64.3 50 60.0
Os05g0529600 Oryza sativa ssp. japonica HOM05D001195 ORTHO05D001138 1.2e-08 62.8 54 59.3
Zm00001eb154140 Zea mays HOM05D001195 ORTHO05D001138 1.2e-08 62.8 54 59.3
Zm00001eb361980 Zea mays HOM05D001195 ORTHO05D001138 1.2e-08 62.8 54 61.1
Thhalv10000763m.g Eutrema salsugineum HOM05D001195 ORTHO05D001138 1.5e-08 62.4 54 64.8
CDE04G2419 Ceratophyllum demersum HOM05D001195 ORTHO05D001138 2.0e-08 62.0 54 50.0
Aa31LG6G1530 Aethionema arabicum HOM05D001195 ORTHO05D001138 3.4e-08 61.2 50 62.0
SalBow8G2953 Salvia bowleyana HOM05D001195 ORTHO05D001138 1.3e-07 59.3 51 60.8
Sp2g10610 Schrenkiella parvula HOM05D001195 ORTHO05D001138 1.7e-07 58.9 48 64.6
BcaC06g34409 Brassica carinata HOM05D001195 ORTHO05D001138 4.9e-07 57.4 55 61.8
C07p29000 Brassica napus HOM05D001195 ORTHO05D001138 4.9e-07 57.4 55 61.8
BolC7t43439H Brassica oleracea HOM05D001195 ORTHO05D001138 4.9e-07 57.4 55 61.8
ATR0012G006 Amborella trichopoda HOM05D001195 ORTHO05D001138 8.3e-07 56.6 53 56.6
BcaB07g30871 Brassica carinata HOM05D001195 ORTHO05D001138 1.1e-06 56.2 54 59.3
A09p21890 Brassica napus HOM05D001195 ORTHO05D001138 1.1e-06 56.2 55 60.0
BraA06t27506Z Brassica rapa HOM05D001195 ORTHO05D001138 1.1e-06 56.2 55 61.8
BraA09t37792Z Brassica rapa HOM05D001195 ORTHO05D001138 1.1e-06 56.2 55 60.0
A06p46420 Brassica napus HOM05D001195 ORTHO05D001138 2.4e-06 55.1 55 60.0
BcaC06g31521 Brassica carinata HOM05D001195 ORTHO05D001138 3.2e-06 54.7 55 60.0
unitig_749.g13667 Utricularia gibba HOM05D001195 ORTHO05D001138 4.1e-06 54.3 66 45.5
unitig_749.g13668 Utricularia gibba HOM05D001195 ORTHO05D001138 4.1e-06 54.3 48 56.2


User provided reference genes

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