Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g13190 Coffea canephora HOM05D006296 ORTHO05D007777 3.9e-78 294.7 143 100.0
Dinv07546 Davidia involucrata HOM05D006296 ORTHO05D007777 3.3e-61 238.4 143 73.4
Nitab4.5_0003942g0060 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.7e-60 236.1 143 73.4
Nitab4.5_0013250g0030 Nicotiana tabacum HOM05D006296 ORTHO05D007777 2.8e-60 235.3 143 72.0
HanXRQChr01g0003901 Helianthus annuus HOM05D006296 ORTHO05D007777 1.1e-59 233.4 143 71.3
SGA_v2.0_scaffold49G18290 Striga asiatica HOM05D006296 ORTHO05D007777 7.7e-58 227.3 144 73.6
CSS0006104 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 1.3e-57 226.5 110 84.5
Hma1.2p1_0126F.1_g059310 Hydrangea macrophylla HOM05D006296 ORTHO05D007777 6.5e-57 224.2 144 76.4
Solyc10g009040.4 Solanum lycopersicum HOM05D006296 ORTHO05D007777 6.5e-57 224.2 143 67.8
Sopen10g004820 Solanum pennellii HOM05D006296 ORTHO05D007777 6.5e-57 224.2 143 67.8
ECA247G1807 Erigeron canadensis HOM05D006296 ORTHO05D007777 8.5e-57 223.8 143 67.8
TWI38G1090 Tripterygium wilfordii HOM05D006296 ORTHO05D007777 8.5e-57 223.8 144 70.1
Aqoxy1G02520 Aquilegia oxysepala HOM05D006296 ORTHO05D007777 1.2e-55 219.9 140 67.9
Lsat_1_v5_gn_1_126121 Lactuca sativa HOM05D006296 ORTHO05D007777 1.6e-55 219.5 143 75.5
Duzib235G1545 Durio zibethinus HOM05D006296 ORTHO05D007777 2.7e-55 218.8 145 71.7
EL10Ac8g20365 Beta vulgaris HOM05D006296 ORTHO05D007777 6.1e-55 217.6 143 66.4
Duzib160G0870 Durio zibethinus HOM05D006296 ORTHO05D007777 1.0e-54 216.9 145 71.7
Nn1g04048 Nelumbo nucifera HOM05D006296 ORTHO05D007777 2.3e-54 215.7 146 69.9
Hund21232 Selenicereus undatus HOM05D006296 ORTHO05D007777 4.0e-54 214.9 143 67.1
Manes.16G026200 Manihot esculenta HOM05D006296 ORTHO05D007777 1.2e-53 213.4 145 66.9
Thecc.06G189800 Theobroma cacao HOM05D006296 ORTHO05D007777 2.6e-53 212.2 145 69.7
MSTRG.15892 Avicennia marina HOM05D006296 ORTHO05D007777 3.3e-53 211.8 114 74.6
RcHm_v2.0_Chr5g0008131 Rosa chinensis HOM05D006296 ORTHO05D007777 3.3e-53 211.8 143 66.4
CsaV3_6G050070 Cucumis sativus L. HOM05D006296 ORTHO05D007777 4.4e-53 211.5 150 63.3
MD10G1295500 Malus domestica HOM05D006296 ORTHO05D007777 9.7e-53 210.3 143 66.4
Sc05g0007770 Simmondsia chinensis HOM05D006296 ORTHO05D007777 9.7e-53 210.3 143 63.6
FAN21G3093 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.3e-52 209.9 115 74.8
MELO3C007289.2 Cucumis melo HOM05D006296 ORTHO05D007777 1.7e-52 209.5 150 62.7
FvH4_3g09420 Fragaria vesca HOM05D006296 ORTHO05D007777 2.2e-52 209.1 143 65.7
Lj6g0008813 Lotus japonicus HOM05D006296 ORTHO05D007777 2.8e-52 208.8 115 73.9
Migut.M01153 Erythranthe guttata HOM05D006296 ORTHO05D007777 3.7e-52 208.4 144 66.0
Peaxi162Scf00530g00219 Petunia axillaris HOM05D006296 ORTHO05D007777 6.3e-52 207.6 183 54.6
Gohir.D06G131300 Gossypium hirsutum HOM05D006296 ORTHO05D007777 8.2e-52 207.2 146 66.4
Gorai.010G153200 Gossypium raimondii HOM05D006296 ORTHO05D007777 8.2e-52 207.2 146 66.4
QL05p039836 Quercus lobata HOM05D006296 ORTHO05D007777 8.2e-52 207.2 143 65.0
Gohir.A06G126500 Gossypium hirsutum HOM05D006296 ORTHO05D007777 1.1e-51 206.8 146 66.4
MD05G1314200 Malus domestica HOM05D006296 ORTHO05D007777 1.1e-51 206.8 143 65.7
Potri.004G041700 Populus trichocarpa HOM05D006296 ORTHO05D007777 1.1e-51 206.8 143 70.6
THA.LOC104812881 Tarenaya hassleriana HOM05D006296 ORTHO05D007777 1.4e-51 206.5 143 69.2
SalBow7G3743 Salvia bowleyana HOM05D006296 ORTHO05D007777 2.4e-51 205.7 175 57.1
Psat7g112640 Pisum sativum HOM05D006296 ORTHO05D007777 3.1e-51 205.3 113 71.7
BcaC09g51212 Brassica carinata HOM05D006296 ORTHO05D007777 4.1e-51 204.9 143 69.2
BcaNung00839 Brassica carinata HOM05D006296 ORTHO05D007777 4.1e-51 204.9 106 77.4
A01p13040 Brassica napus HOM05D006296 ORTHO05D007777 4.1e-51 204.9 143 69.2
C01p15710 Brassica napus HOM05D006296 ORTHO05D007777 4.1e-51 204.9 143 69.2
BolC1t01524H Brassica oleracea HOM05D006296 ORTHO05D007777 4.1e-51 204.9 143 69.2
BraA01t01246Z Brassica rapa HOM05D006296 ORTHO05D007777 4.1e-51 204.9 143 69.2
CiPaw.10G047400 Carya illinoinensis HOM05D006296 ORTHO05D007777 7.0e-51 204.1 110 74.5
Lalb_Chr16g0383701 Lupinus albus HOM05D006296 ORTHO05D007777 7.0e-51 204.1 113 74.3
Phvul.006G187000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 7.0e-51 204.1 115 73.0
FAN11G0154 Fragaria x ananassa HOM05D006296 ORTHO05D007777 9.1e-51 203.8 123 70.7
Glyma.13G180700 Glycine max HOM05D006296 ORTHO05D007777 9.1e-51 203.8 143 69.2
Cfa000430 Carpinus fangiana HOM05D006296 ORTHO05D007777 1.2e-50 203.4 143 69.9
TPR.G12044 Trifolium pratense HOM05D006296 ORTHO05D007777 1.6e-50 203.0 115 70.4
BcaC06g30674 Brassica carinata HOM05D006296 ORTHO05D007777 2.0e-50 202.6 104 77.9
A03p52890 Brassica napus HOM05D006296 ORTHO05D007777 2.0e-50 202.6 130 66.2
BraA03t14365Z Brassica rapa HOM05D006296 ORTHO05D007777 2.0e-50 202.6 130 66.2
Sp7g19880 Schrenkiella parvula HOM05D006296 ORTHO05D007777 2.0e-50 202.6 143 69.2
BcaNung00841 Brassica carinata HOM05D006296 ORTHO05D007777 3.5e-50 201.8 143 67.1
Medtr4g088930 Medicago truncatula HOM05D006296 ORTHO05D007777 3.5e-50 201.8 145 66.2
Rhsim13G0176800 Rhododendron simsii HOM05D006296 ORTHO05D007777 4.5e-50 201.4 153 71.2
arahy.Tifrunner.gnm1.ann1.6I4RI9 Arachis hypogaea HOM05D006296 ORTHO05D007777 5.9e-50 201.1 110 73.6
FAN08G1739 Fragaria x ananassa HOM05D006296 ORTHO05D007777 7.7e-50 200.7 139 64.0
Ca_18536_v3 Cicer arietinum L. HOM05D006296 ORTHO05D007777 5.0e-49 198.0 105 74.3
SEGI_22799 Sequoiadendron giganteum HOM05D006296 ORTHO05D007777 5.0e-49 198.0 143 62.9
PSO675G2929 Papaver somniferum HOM05D006296 ORTHO05D007777 6.5e-49 197.6 143 62.2
Nitab4.5_0002158g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 1.5e-48 196.4 115 69.6
VMungo0251G3500 Vigna mungo HOM05D006296 ORTHO05D007777 1.5e-48 196.4 145 60.0
CARHR228450 Cardamine hirsuta HOM05D006296 ORTHO05D007777 1.9e-48 196.1 126 65.1
Prupe.4G044900 Prunus persica HOM05D006296 ORTHO05D007777 3.2e-48 195.3 143 67.1
CiPaw.09G058300 Carya illinoinensis HOM05D006296 ORTHO05D007777 4.2e-48 194.9 143 63.6
Thhalv10026538m.g Eutrema salsugineum HOM05D006296 ORTHO05D007777 4.2e-48 194.9 143 65.0
AL7G32220 Arabidopsis lyrata HOM05D006296 ORTHO05D007777 7.2e-48 194.1 143 66.4
Glyma.07G195600 Glycine max HOM05D006296 ORTHO05D007777 7.2e-48 194.1 110 70.9
Aa31LG6G3700 Aethionema arabicum HOM05D006296 ORTHO05D007777 1.2e-47 193.4 162 59.9
BcaNung02241 Brassica carinata HOM05D006296 ORTHO05D007777 2.1e-47 192.6 132 62.9
Os04g0680300 Oryza sativa ssp. japonica HOM05D006296 ORTHO05D007777 4.7e-47 191.4 107 71.0
Sopen02g023280 Solanum pennellii HOM05D006296 ORTHO05D007777 6.1e-47 191.0 115 67.0
FAN18G2724 Fragaria x ananassa HOM05D006296 ORTHO05D007777 1.0e-46 190.3 155 57.4
unitig_22.g6746 Utricularia gibba HOM05D006296 ORTHO05D007777 1.8e-46 189.5 143 55.9
DCAR_018474 Daucus carota HOM05D006296 ORTHO05D007777 3.0e-46 188.7 108 74.1
Solyc02g078430.3 Solanum lycopersicum HOM05D006296 ORTHO05D007777 5.2e-46 188.0 115 66.1
Eucgr.D00634 Eucalyptus grandis HOM05D006296 ORTHO05D007777 6.8e-46 187.6 143 60.8
AT4G21720 Arabidopsis thaliana HOM05D006296 ORTHO05D007777 8.8e-46 187.2 143 62.2
HPP92_014805 Vanilla planifolia HOM05D006296 ORTHO05D007777 2.0e-45 186.0 144 56.2
Carub.0007s1968 Capsella rubella HOM05D006296 ORTHO05D007777 2.6e-45 185.7 143 58.0
Nn1g06589 Nelumbo nucifera HOM05D006296 ORTHO05D007777 1.7e-44 183.0 91 83.5
CANSAT35G0041 Cannabis sativa HOM05D006296 ORTHO05D007777 2.8e-44 182.2 143 59.4
Migut.H01493 Erythranthe guttata HOM05D006296 ORTHO05D007777 1.1e-43 180.3 113 61.1
CAN.G1164.13 Capsicum annuum HOM05D006296 ORTHO05D007777 1.8e-43 179.5 108 65.7
Atru.chr10.1908 Acer truncatum HOM05D006296 ORTHO05D007777 3.1e-43 178.7 106 66.0
Oeu005074.1 Olea europaea HOM05D006296 ORTHO05D007777 4.1e-43 178.3 124 74.2
Zm00001eb065930 Zea mays HOM05D006296 ORTHO05D007777 9.1e-43 177.2 109 65.1
PSO541G0808 Papaver somniferum HOM05D006296 ORTHO05D007777 3.5e-42 175.3 184 48.9
Nitab4.5_0005954g0020 Nicotiana tabacum HOM05D006296 ORTHO05D007777 2.9e-41 172.2 115 63.5
PGR004G1731 Punica granatum HOM05D006296 ORTHO05D007777 3.8e-41 171.8 143 58.7
Peaxi162Scf00736g00313 Petunia axillaris HOM05D006296 ORTHO05D007777 1.1e-40 170.2 115 64.3
VMungo0540G1954 Vigna mungo HOM05D006296 ORTHO05D007777 2.5e-40 169.1 136 55.9
Lj2A287T56 Lonicera japonica HOM05D006296 ORTHO05D007777 2.8e-39 165.6 117 65.8
Phvul.002G228000 Phaseolus vulgaris HOM05D006296 ORTHO05D007777 8.9e-38 160.6 143 53.1
ATR0680G190 Amborella trichopoda HOM05D006296 ORTHO05D007777 1.2e-37 160.2 117 65.0
Ciclev10017521m.g Citrus clementina HOM05D006296 ORTHO05D007777 9.8e-37 157.1 78 82.1
Sed0007841 Sechium edule HOM05D006296 ORTHO05D007777 1.7e-36 156.4 127 57.5
Sabra11G0035100 Salix brachista HOM05D006296 ORTHO05D007777 2.7e-34 149.1 150 52.0
arahy.Tifrunner.gnm1.ann1.F25ZWM Arachis hypogaea HOM05D006296 ORTHO05D007777 2.9e-33 145.6 78 73.1
Actinidia25618 Actinidia chinensis HOM05D006296 ORTHO05D007777 4.3e-32 141.7 90 70.0
GSVIVG01002932001 Vitis vinifera HOM05D006296 ORTHO05D007777 4.3e-32 141.7 84 67.9
AUR62014802 Chenopodium quinoa HOM05D006296 ORTHO05D007777 9.8e-29 130.6 99 60.6
Actinidia07582 Actinidia chinensis HOM05D006296 ORTHO05D007777 2.2e-28 129.4 101 66.3
AUR62016993 Chenopodium quinoa HOM05D006296 ORTHO05D007777 3.7e-28 128.6 99 60.6
FvH4_5g20990 Fragaria vesca HOM05D006296 ORTHO05D007777 1.6e-26 123.2 108 56.5
ClCG00G005210 Citrullus lanatus HOM05D006296 ORTHO05D007777 4.6e-26 121.7 104 57.7
ClCG01G022900 Citrullus lanatus HOM05D006296 ORTHO05D007777 4.6e-26 121.7 104 57.7
Sabra04G0025800 Salix brachista HOM05D006296 ORTHO05D007777 1.9e-24 116.3 99 58.6
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 5.6e-24 114.8 73 69.9
AagrBONN_evm.TU.Sc2ySwM_362.1174 Anthoceros agrestis HOM05D006296 ORTHO05D007777 2.1e-23 112.8 104 46.2
CDE04G3708 Ceratophyllum demersum HOM05D006296 ORTHO05D007777 2.8e-23 112.5 98 59.2
PGSC0003DMG400022442 Solanum tuberosum HOM05D006296 ORTHO05D007777 4.6e-18 95.1 70 58.6
Sed0020533 Sechium edule HOM05D006296 ORTHO05D007777 6.0e-18 94.7 64 57.8
Cpa.g.sc27.57 Carica papaya HOM05D006296 ORTHO05D007777 1.4e-11 73.6 68 52.9
Haze_06487 Corylus avellana HOM05D006296 ORTHO05D007777 7.1e-11 71.2 38 76.3
PGSC0003DMG400022813 Solanum tuberosum HOM05D006296 ORTHO05D007777 2.1e-10 69.7 65 52.3
CSS0025334 Camellia sinensis var. sinensis HOM05D006296 ORTHO05D007777 1.1e-08 63.9 36 66.7
MBI18_g17001_MAGBIO Magnolia biondii HOM05D006296 ORTHO05D007777 1.2e-07 60.5 65 56.9


User provided reference genes

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